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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021635 ID=TCONS_00021635|Name=TCONS_00021635|organism=Clytia hemisphaerica|type=transcript|length=2817bpRun BLAST on NCBI protein sequence of TCONS_00021635-protein >TCONS_00021635-protein ID=TCONS_00021635-protein|Name=TCONS_00021635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp MLGGFRRSNKRGNVRKRIETKDSDEENEEGEMETDSPVATPKPVAALVETRun BLAST on NCBI transcript from alignment at sc0000391:82450..158136+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021635 ID=TCONS_00021635|Name=TCONS_00021635|organism=Clytia hemisphaerica|type=transcript|length=75687bp|location=Sequence derived from alignment at sc0000391:82450..158136+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000391:82450..158136+ >TCONS_00021635 ID=TCONS_00021635|Name=TCONS_00021635|organism=Clytia hemisphaerica|type=CDS|length=27390bp|location=Sequence derived from alignment at sc0000391:82450..158136+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021635 vs. Swiss-Prot (Human)
Match: PAXB1 (PAX3- and PAX7-binding protein 1 OS=Homo sapiens GN=PAXBP1 PE=1 SV=2) HSP 1 Score: 395.201 bits (1014), Expect = 2.000e-121 Identity = 248/712 (34.83%), Postives = 379/712 (53.23%), Query Frame = 1
Query: 571 RPGDIPDAATIYAMKKQREQARQFGGGQNYIPMNSNKHAGRFPSENSRLVREEMEMNSSDEERMEMKGKQTYDPYLERRSQVAKALXXXXXXXXXXXXXXXXXXXLRNWENEQINKGTKIPANAYKRPALPNPVPMVHHEPPTIYSIPNSDQSGI--------------------------------VSVDYITKKLAEELSTKKQLHRMHSQDFEKIKGSLASSKENIENLEEKAEQLDEKFSFFQDMRGFSKDLIECLGEKVKTIKSLEEAIHQSMKKRNELIANRRQNDVKDEAQEIQGKTTA-------DS---DR-VTNLXXXXXXXXXXXXXXXXXXXXXSIGGSDGHFGGQSSDDELIPSDSSKFKADKEKVIKERELVFEDVNSSFSSVKEILSRFEQWKFGFNESYKDAFMGLCIPKLMAPFVKMDTLTWNPLETKNNVDFEDMSWYKDAAMYGHHGDSIDTEDDDLNLLPLIVEKILVPKLIVLTQDVWDPLSKQQTRLLVYLVKRLVDDYPTMTK-ESKGVQRLMETIVLKLKTSVETDLFIPLYPRSSLQGKNPKALIFLERQFWKGVKLFDNVMQWNLILSQKKLQELGVDAILNRYLIMALQQFPDPLSSFEKCKHVVNLLPKDWF-DKNSDNVIGGLQAVARYLVGLASTAHANSLGYDENYRKRISTVIKKIISLLMHIQAFDEARAVATDHKEKK 2571
RPG+IPDAA I+A +K+R+ AR+ G ++ P ++ GR E+ ++ + + +K K +R ++A+ + G ++ QDEE L WE EQI KG IP +PA V M + T ++P GI V++D + K+L + L + K+LH+ + Q EK S S IE LE + + E++ F Q+MRG+ +DL+EC EKV I LE AIHQ K+R + RRQ+D+KDE+ E + DS DR + +R R RR + G H G SSDDE +D + F +K+++ KE VFEDV SF S+ I S+FE W+ + SYKDA++GLC+PKL P +++ LTW PLE K DFE+M W++ YG + +D D+ LLP IVEK+++PKL V+ +++WDP S QT +V + +L++ YP++ E+K Q ++ ++L+++ +++ D+F+PLYP++ L+ KN +F +RQFW VKL N +QW I S K LQEL +D +LNRY++MA Q S +K ++V+N PK WF + + I L+ RYLV LA T + NS+G + ++ IK+I+ LL ++A D A +VA+DH K+
Sbjct: 215 RPGEIPDAAFIHAARKKRQMARELG---DFTPHDNEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKS-------QRQKIAEEIGIEGSDDDALVTGEQDEE-LSRWEQEQIRKGINIPQVQASQPA---EVNMYYQN--TYQTMPYGSSYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDDEETSTDITNFNLEKDRISKESGKVFEDVLESFYSIDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCR-DFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIKKAQNVINCFPKQWFMNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAMSVASDHNVKE 909 The following BLAST results are available for this feature:
BLAST of TCONS_00021635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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