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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021640 ID=TCONS_00021640|Name=TCONS_00021640|organism=Clytia hemisphaerica|type=transcript|length=1379bp
agagaataaaaaaaaatgcataCACAGCAAAATTGAAGTAGCTTGCTATT
TCAAACCAAAGGAAGATCTGCATGACCTCGACCAACAACAATCATTATAT
TGGCTTGTTAGAGAAGTATGATTTTCTACAAGACGTTGATCTTTCTTACG
TGTGTTTTAAGAAATAGCAACTCTCAGGAAAGAAATTCAACTGTCAACAA
AAATCATCAACATTTGTTTCCAAATCTATCACCATATCCAACGAATTACT
TCACAGAGACTGTCAATCATTTTGTAAACAATCGACCAATTATTGGTATT
GTTGCTATGAAAATGAAAGGAGGAAAAACAGTGACTGAATACCCAGCTTT
GAAAGGACAAGATTATTTTGGTGCATCTTTCGTGAAATGGGTTGAATCGG
TTGGTGGACGAGTTGTGCCGATCCCTGAGGACATCGGAAAGTTTAGTCTG
CTGAAACTTCTCAACAAAATCAATGGAGTCATTTTGCCTGGAGGTGACGG
TGATTTCCAAAGAGTTGCCAAAATTATCGTCCAATACTCAAGaaagcaaa
aagttaaaaagaatcGACTTTTTCCCGTCCTTGGAATATGTCTTGGTGCA
CAAATACTTATGAAGATTCAAACAActcaaaagattttgaaatcgACTGA
TAGTTATAATATGGATTTACCTCTCATTTTCACAAAGCATCGAAGGAAGT
CTCAATTATTTGGACATGCGCCAGAAGATTTGATAAGAGTTATAGAACGA
AAGACAATTTCTTTCAATGCTCATTTGAACAGTATATTGGTATCAGATTT
TTTTCGACGTGAAGAGCTAGTTAAGCACTATCAAATTTTGACGATAAATC
GAGACATCAAAGGAAAGCAGTTTATAAGCACTTTTGAAGATAAAAATGCA
CCGATCTTTGGTTTGCAATGGCATCCAGAAAAAtcactttttgttttcaa
tccAAAACTTTCTATCAATCATTCGGTATATGGTGTCGTCGTGGCGCAGT
ATATCATGAACGTTTTTATGGGAATGGCGCGTCAAAATTCAAACCATTTT
GAAAGTTATCGAGAAGTGAAAAACAATCTCGTTTATAAATACAATCATTT
GTATTTTGGAAATATGACCGACAGCTCTTACGAGCAAGTTTACGTCATCC
CACCGATGTAGCATATTTCTGTGACATCAATAGTCAAAAGGTTCCTATGT
CGTGGTCTATATAAGANCACCGATGTAGCATATTTCTGTGACATCAATAG
TCAAAAGGTTCCTATGCCGTTCCTATGTGTACCAAGTTTATCGTtttaca
tctgcaatttgagctttactaaaCTCGTTTGACGTCAATTAATACTTGGA
TCATAACCCGtatgagagagagagagaga Run BLAST on NCBI protein sequence of TCONS_00021640-protein >TCONS_00021640-protein ID=TCONS_00021640-protein|Name=TCONS_00021640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MIFYKTLIFLTCVLRNSNSQERNSTVNKNHQHLFPNLSPYPTNYFTETVN
HFVNNRPIIGIVAMKMKGGKTVTEYPALKGQDYFGASFVKWVESVGGRVV
PIPEDIGKFSLLKLLNKINGVILPGGDGDFQRVAKIIVQYSRKQKVKKNR
LFPVLGICLGAQILMKIQTTQKILKSTDSYNMDLPLIFTKHRRKSQLFGH
APEDLIRVIERKTISFNAHLNSILVSDFFRREELVKHYQILTINRDIKGK
QFISTFEDKNAPIFGLQWHPEKSLFVFNPKLSINHSVYGVVVAQYIMNVF
MGMARQNSNHFESYREVKNNLVYKYNHLYFGNMTDSSYEQVYVIPPM Run BLAST on NCBI transcript from alignment at sc0000391:181334..183433+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021640 ID=TCONS_00021640|Name=TCONS_00021640|organism=Clytia hemisphaerica|type=transcript|length=2100bp|location=Sequence derived from alignment at sc0000391:181334..183433+ (Clytia hemisphaerica)
agagaataaaaaaaaatgcataCACAGCAAAATTGAAGTAGCTTGCTATT
TCAAACCAAAGGAAGATCTGCATGACCTCGACCAACAACAATCATTATAT
TGGCTTGTTAGAGAAGTATGATTTTCTACAAGACGTTGATCTTTCTTACG
TGTGTTTTAAGAAATAGCAACTCTCAGGAAAGAAATTCAACTGTCAACAA
AAATCATCAACATTTGTTTCCAAATCTATCACCATATCCAACGAATTACT
TCACAGAGACTGTCAATCATTTTGTAAACAATCGACCAATTATTGGTATT
GTTGCTATGAAAATGAAAGGAGGAAAAACAGTGACTGAATACCCAGCTTT
GAAAGGACAAGATTATTTTGGTGCATCTTTCGTGAAATGGGTTGAATCGG
TTGGTGGACGAGTTGTGCCGATCCCTGAGGTAAAAAATCTCTATAGATGC
CCAGCTGAAATTAAGTATTTTAAATATAACTCCGGCCACTGTAATCACAA
TTTATCAACATGCCAAgtaaattatctttccaacgagacaaaagcttttt
aataaataaatggATGAAAGCTGTATAACTGCCTTAcaagaaattgttaa
aaattttcactaatttttgacattcttCACTAGAAAACTTTAATAAAGCC
AATGCTCTTTCGTTAAAGGACATCGGAAAGTTTAGTCTGCTGAAACTTCT
CAACAAAATCAATGGAGTCATTTTGCCTGGAGGTGACGGTGATTTCCAAA
GAGTTGCCAAAATTATCGTCCAATACTCAAGaaagcaaaaagttaaaaag
aatcGACTTTTTCCCGTCCTTGGAATATGTCTTGGTGCACAAATACTTAT
GAAGATTCAAACAActcaaaagattttgaaatcgACTGATAGTTATAATA
TGGATTTACCTCTCATTTTCACAAAGCATCGAAGGAAGTCTCAATTATTT
GGACATGCGCCAGAAGATTTGATAAGAGTTATAGAACGAAAGACAATTTC
TTTCAATGCTCATTTGAACAGTATATTGGTATCAGATTTTTTTCGACGTG
AAGAGCTAGTTAAGCACTATCAAATTTTGACGATAAATCGAGACATCAAA
GGAAAGCAGTTTATAAGCACTTTTGAAGGTAACGCATGTGATTATcataa
aataaacaattttattttctctGAAGAGTAAAAAGGTTACAACATGGAGT
AGAGTTTTGTTGgtattcaaataaaattttctttaggAAGAGtggttttg
atctttttttgaGAAAGCATTTTGCTTAATAAgtatatgttttttatttt
ttaagcatacatttataagcatatgcaggctcagtttttggtacctaaac
aatgactctattgtttgagaacagtaaaatgctaagcataatgcgagtaA
TGTATATGCCATTTTTAAAGACAAAGTCTAATGACTTAGCGCTATTTTAT
GCGATTTTATTTAGCGATTCTGCCAAAAATTCAACATTAAGCATTTTTCT
CCTGTCTTTGTGCACGTTTTCATCGGTATTAAATTTTCTCGGTCCTCTGT
GTGAAATTGCACGAAAATTAACTGAATTATACTATAGCCTGAACTGTTTT
CTCATTTCAGATAAAAATGCACCGATCTTTGGTTTGCAATGGCATCCAGA
AAAAtcactttttgttttcaatccAAAACTTTCTATCAATCATTCGGTAT
ATGGTGTCGTCGTGGCGCAGTATATCATGAACGTTTTTATGGGAATGGCG
CGTCAAAATTCAAACCATTTTGAAAGTTATCGAGAAGTGAAAAACAATCT
CGTTTATAAATACAATCATTTGTATTTTGGAAATATGACCGACAGCTCTT
ACGAGCAAGTTTACGTCATCCCACCGATGTAGCATATTTCTGTGACATCA
ATAGTCAAAAGGTTCCTATGTCGTGGTCTATATAAGANCACCGATGTAGC
ATATTTCTGTGACATCAATAGTCAAAAGGTTCCTATGCCGTTCCTATGTG
TACCAAGTTTATCGTtttacatctgcaatttgagctttactaaaCTCGTT
TGACGTCAATTAATACTTGGATCATAACCCGtatgagagagagagagaga
Coding sequence (CDS) from alignment at sc0000391:181334..183433+ >TCONS_00021640 ID=TCONS_00021640|Name=TCONS_00021640|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at sc0000391:181334..183433+ (Clytia hemisphaerica)
ATGATTTTCTACAAGACGTTGATCTTTCTTACGTGTGTTTTAAGAAATAG
CAACTCTCAGGAAAGAAATTCAACTGTCAACAAAAATCATCAACATTTGT
TTCCAAATCTATCACCATATCCAACGAATTACTTCACAGAGACTGTCAAT
CATTTTGTAAACAATCGACCAATTATTGGTATTGTTGCTATGAAAATGAA
AGGAGGAAAAACAGTGACTGAATACCCAGCTTTGAAAGGACAAGATTATT
TTGGTGCATCTTTCGTGAAATGGGTTGAATCGGTTGGTGGACGAGTTGTG
CCGATCCCTGAGGACATCGGAAAGTTTAGTCTGCTGAAACTTCTCAACAA
AATCAATGGAGTCATTTTGCCTGGAGGTGACGGTGATTTCCAAAGAGTTG
CCAAAATTATCGTCCAATACTCAAGaaagcaaaaagttaaaaagaatcGA
CTTTTTCCCGTCCTTGGAATATGTCTTGGTGCACAAATACTTATGAAGAT
TCAAACAActcaaaagattttgaaatcgACTGATAGTTATAATATGGATT
TACCTCTCATTTTCACAAAGCATCGAAGGAAGTCTCAATTATTTGGACAT
GCGCCAGAAGATTTGATAAGAGTTATAGAACGAAAGACAATTTCTTTCAA
TGCTCATTTGAACAGTATATTGGTATCAGATTTTTTTCGACGTGAAGAGC
TAGTTAAGCACTATCAAATTTTGACGATAAATCGAGACATCAAAGGAAAG
CAGTTTATAAGCACTTTTGAAGATAAAAATGCACCGATCTTTGGTTTGCA
ATGGCATCCAGAAAAAtcactttttgttttcaatccAAAACTTTCTATCA
ATCATTCGGTATATGGTGTCGTCGTGGCGCAGTATATCATGAACGTTTTT
ATGGGAATGGCGCGTCAAAATTCAAACCATTTTGAAAGTTATCGAGAAGT
GAAAAACAATCTCGTTTATAAATACAATCATTTGTATTTTGGAAATATGA
CCGACAGCTCTTACGAGCAAGTTTACGTCATCCCACCGATGTAGATGATT
TTCTACAAGACGTTGATCTTTCTTACGTGTGTTTTAAGAAATAGCAACTC
TCAGGAAAGAAATTCAACTGTCAACAAAAATCATCAACATTTGTTTCCAA
ATCTATCACCATATCCAACGAATTACTTCACAGAGACTGTCAATCATTTT
GTAAACAATCGACCAATTATTGGTATTGTTGCTATGAAAATGAAAGGAGG
AAAAACAGTGACTGAATACCCAGCTTTGAAAGGACAAGATTATTTTGGTG
CATCTTTCGTGAAATGGGTTGAATCGGTTGGTGGACGAGTTGTGCCGATC
CCTGAGGACATCGGAAAGTTTAGTCTGCTGAAACTTCTCAACAAAATCAA
TGGAGTCATTTTGCCTGGAGGTGACGGTGATTTCCAAAGAGTTGCCAAAA
TTATCGTCCAATACTCAAGaaagcaaaaagttaaaaagaatcGACTTTTT
CCCGTCCTTGGAATATGTCTTGGTGCACAAATACTTATGAAGATTCAAAC
AActcaaaagattttgaaatcgACTGATAGTTATAATATGGATTTACCTC
TCATTTTCACAAAGCATCGAAGGAAGTCTCAATTATTTGGACATGCGCCA
GAAGATTTGATAAGAGTTATAGAACGAAAGACAATTTCTTTCAATGCTCA
TTTGAACAGTATATTGGTATCAGATTTTTTTCGACGTGAAGAGCTAGTTA
AGCACTATCAAATTTTGACGATAAATCGAGACATCAAAGGAAAGCAGTTT
ATAAGCACTTTTGAAGATAAAAATGCACCGATCTTTGGTTTGCAATGGCA
TCCAGAAAAAtcactttttgttttcaatccAAAACTTTCTATCAATCATT
CGGTATATGGTGTCGTCGTGGCGCAGTATATCATGAACGTTTTTATGGGA
ATGGCGCGTCAAAATTCAAACCATTTTGAAAGTTATCGAGAAGTGAAAAA
CAATCTCGTTTATAAATACAATCATTTGTATTTTGGAAATATGACCGACA
GCTCTTACGAGCAAGTTTACGTCATCCCACCGATGTAGATGATTTTCTAC
AAGACGTTGATCTTTCTTACGTGTGTTTTAAGAAATAGCAACTCTCAGGA
AAGAAATTCAACTGTCAACAAAAATCATCAACATTTGTTTCCAAATCTAT
CACCATATCCAACGAATTACTTCACAGAGACTGTCAATCATTTTGTAAAC
AATCGACCAATTATTGGTATTGTTGCTATGAAAATGAAAGGAGGAAAAAC
AGTGACTGAATACCCAGCTTTGAAAGGACAAGATTATTTTGGTGCATCTT
TCGTGAAATGGGTTGAATCGGTTGGTGGACGAGTTGTGCCGATCCCTGAG
GACATCGGAAAGTTTAGTCTGCTGAAACTTCTCAACAAAATCAATGGAGT
CATTTTGCCTGGAGGTGACGGTGATTTCCAAAGAGTTGCCAAAATTATCG
TCCAATACTCAAGaaagcaaaaagttaaaaagaatcGACTTTTTCCCGTC
CTTGGAATATGTCTTGGTGCACAAATACTTATGAAGATTCAAACAActca
aaagattttgaaatcgACTGATAGTTATAATATGGATTTACCTCTCATTT
TCACAAAGCATCGAAGGAAGTCTCAATTATTTGGACATGCGCCAGAAGAT
TTGATAAGAGTTATAGAACGAAAGACAATTTCTTTCAATGCTCATTTGAA
CAGTATATTGGTATCAGATTTTTTTCGACGTGAAGAGCTAGTTAAGCACT
ATCAAATTTTGACGATAAATCGAGACATCAAAGGAAAGCAGTTTATAAGC
ACTTTTGAAGATAAAAATGCACCGATCTTTGGTTTGCAATGGCATCCAGA
AAAAtcactttttgttttcaatccAAAACTTTCTATCAATCATTCGGTAT
ATGGTGTCGTCGTGGCGCAGTATATCATGAACGTTTTTATGGGAATGGCG
CGTCAAAATTCAAACCATTTTGAAAGTTATCGAGAAGTGAAAAACAATCT
CGTTTATAAATACAATCATTTGTATTTTGGAAATATGACCGACAGCTCTT
ACGAGCAAGTTTACGTCATCCCACCGATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021640-exon-sc0000391-1491911889:181334..181762 | TCONS_00021640-exon-sc0000391-1491911889:181334..181762 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1510915933:181334..181762 | TCONS_00021640-exon-sc0000391-1510915933:181334..181762 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1575043694:181334..181762 | TCONS_00021640-exon-sc0000391-1575043694:181334..181762 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1491911889:182002..182461 | TCONS_00021640-exon-sc0000391-1491911889:182002..182461 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1510915933:182002..182461 | TCONS_00021640-exon-sc0000391-1510915933:182002..182461 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1575043694:182002..182461 | TCONS_00021640-exon-sc0000391-1575043694:182002..182461 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1491911889:182944..183433 | TCONS_00021640-exon-sc0000391-1491911889:182944..183433 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1510915933:182944..183433 | TCONS_00021640-exon-sc0000391-1510915933:182944..183433 | Clytia hemisphaerica | exon |
| TCONS_00021640-exon-sc0000391-1575043694:182944..183433 | TCONS_00021640-exon-sc0000391-1575043694:182944..183433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:181334..183433 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0008242 | omega peptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006541 | glutamine metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006541 |
glutamine metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0008242 |
omega peptidase activity |
Blast
BLAST of TCONS_00021640 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 1.652e-49 Identity = 103/293 (35.15%), Postives = 168/293 (57.34%), Query Frame = 1
Query: 283 RPIIGIVAMKMKGGKTVTEYPALKGQDYFGASFVKWVESVGGRVVPIPEDIGKFSLLKLLNKINGVILPGGD-----GDFQRVAKIIVQYSRKQKVKKNRLFPVLGICLGAQILMKIQTTQKILKSTDSYNMDLPLIFTKHRRKSQLFGHAPEDLIRVIERKTISFNAHLNSILVSDFFRREELVKHYQILTINRDIKGKQFISTFEDKNAPIFGLQWHPEKSLFVFNPKLSINHSVYGVVVAQYIMNVFMGMARQNSNHFESYREVKNNLVYKYNHLYFGNMTDSSYEQVYV 1146
+PIIGI+ K + K + Y G+ Y AS+VK++ES G RVVP+ D+ + L ING++ PGG D+ +VAKI S Q FPV G CLG + L + + + +L +TD+ ++ +PL FT + S++F + P +L+ + + ++ N H S+ V +F E+L K + +LT N D K +FIST E P++G+QWHPEK+ + + I+H+ V A Y+ F+ AR+N++HF+S E + L+Y+++ +Y GN+ SS++Q Y+
Sbjct: 33 KPIIGILMQKCRN-KVMKNY----GRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSI-QSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGK-IEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNI--SSFQQCYI 316
The following BLAST results are available for this feature:
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