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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021646 ID=TCONS_00021646|Name=TCONS_00021646|organism=Clytia hemisphaerica|type=transcript|length=931bp CACGGATTATGTACTAGATAGGGCTGAGTAGGTAGGAggaataaaataaa agataGAAGAGAGAGAAAAATATAGATTgatttataaaagaaataagATT TGTGCACTTACTTGAGCATCAATGAAGCCATCATCATTCTTATTAATCCT ATGATATCTTACACTAGGTCTAGAGGCCATGATCTGTGTGAAAATTAGGT CTGTATCAACCAAAGTTATcacaaattttcaagatttctgccTGTTGTAA ACTAACCACAGCTGCTGAAAATACTGATTGGACTGACAAggaaccacttt cgttttcaaagctGCCATTTTAAAACAATTAAAGCGCTCTACGCCCTTTG TTTCGAAATTGACCGCCATCGGGCgggtaaaaattattttcaaaatggcg acatgTACAGCGACATGTGCAttcaaaaatttgagaacatcCAGGATACT TTTAACCCAAAGCACGAGAAGCATTTCAGgaagaaGGAATACACATGATT CATTGACTAATACTAAAAAGGATCCCTTTTATCCTGTCAAGAAGCTTGTT GAGAATTATTTGGAGAAAACAAGTCCCATTTTAGATTATGGTTCAATTTA TGAAAAATATCCACATGCAAAAAAAGCTTTGATTGGTCAGGAACCAGAAA GAAGAATGGTATGGGAGGAGCAGGACTGTTCGCAATCCTTTCCTGAGTCA CCAGAAGCAGCTAATCTGGACCTTCTGAATTACCTCGAACAACGTGATAT GTGGCAACGCcatcaaaatcttgaaattccAAAGTTTTGCATCGGTAGCA TTGTCGCGGTAACCAGGGCTGACCCCTATGCACCTGAAGGATGGACCAGG TTTGTTGGACTATGCATAAACAAGAATATATCGCAAAATAACAAAGGATC GAATTTTATACTGAGAAACGTAATCCAAGGN Run BLAST on NCBI protein sequence of TCONS_00021646-protein >TCONS_00021646-protein ID=TCONS_00021646-protein|Name=TCONS_00021646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MATCTATCAFKNLRTSRILLTQSTRSISGRRNTHDSLTNTKKDPFYPVKK LVENYLEKTSPILDYGSIYEKYPHAKKALIGQEPERRMVWEEQDCSQSFP ESPEAANLDLLNYLEQRDMWQRHQNLEIPKFCIGSIVAVTRADPYAPEGW TRFVGLCINKNISQNNKGSNFILRNVIQX Run BLAST on NCBI transcript from alignment at sc0000391:5498..11240- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021646 ID=TCONS_00021646|Name=TCONS_00021646|organism=Clytia hemisphaerica|type=transcript|length=5743bp|location=Sequence derived from alignment at sc0000391:5498..11240- (Clytia hemisphaerica) CACGGATTATGTACTAGATAGGGCTGAGTAGGTAGGAGGAATAAAATAAA
AGATAGAAGAGAGAGAAAAATATAGATTGATTTATAAAAGAAATAAGATT
TGTGCACTTACTTGAGCATCAATGAAGCCATCATCATTCTTATTAATCCT
ATGATATCTTACACTAGGTCTAGAGGCCATGATCTGTGTGAAAATTAGGT
CTGTATCAACCAAAGTTATCACAAATTTTCAAGATTTCTGCCTGTTGTAA
ACTAACCACAGCTGCTGAAAATACTGATTGGACTGACAAGGAACCACTTT
CGTTTTCAAAGCTGCCATTTTAAAACAATTAAAGCGCTCTACGCCCTTTG
TTTCGAAATTGACCGCCATCGGGCGGGTAAAAATTATTTTCAAAATGGCG
ACATGTACAGCGACATGTGCATTCAAAAATTTGAGAACATCCAGGATACT
TTTAACCCAAAGCACGAGAAGCATTTCAGGTAAGTTGATTTTACATCATT
GTATTGCTTCTTCATTTGCCTTTTGTGTCTTTTTGATAATTCCTTTGAAC
ATCAGAGACAGACTCCCCTCACTCTCAGTCAGGTACAATAATGGAAGCTT
TTTTCAAATCTGGGGGGGTACGATGGCAAATGAGAAAATTTAACCGATTT
TACCAATGAACTGATATCCACTTTTAATGCTTTATACTGGAATTGGCCTA
CTTACTATTGGAATGCCCTTAAATTGAACTACCTGTACATTGAACATAAC
ATATGCCTTCACCCACTTTTTTAAGGCCATATCATCATCATCATACCGTT
ACATCAAAATGCCTCGAAAATGTCAATATGAAAATTGCGTAATCAGAGAA
CATATGTCTCGCTCATTATAAAAAGGCTGAGAAAAACTTTCAATAATTGG
ATTGTAACATCGAGTTAAGTCTCTTTTGTTAAGTCACCAGGGGGTAAATA
AAACATACCTTGATACATTTATTTATCGTTCGTTTCAACTTGACGATTCG
TTTCAAACTCAGCCTCCTAAATATTTGGGGTAGGTAAAATATGTTCAAAG
AAATTCATACTTTTCCAACCCGGCGAATCTTTAAAAAAGAAGCGAACAAT
AAAATATACAGTAATTACCCTTTCCAAATAATCCTCTTCGGTGGCGAGCG
TAGTCTACTCTGACAGTTCCATCAATATGCCAAAAACATTTTGTTCAACC
ACTTTCACTTCAAGGTAGGCCACCATAGAATGAACTTCCTTTTATAGGAT
GAACCATATTCATGTGGTTTTCAGCCTGCACTCCATCACAGAGCCTATTT
GAGATATTTTTACTAACTAGCCCAGAGAAAAATTTTAAACCTTTATTATT
TGAATGCATGCCTTTTTAATACTCAAATATAAAAAAATTAAAAAATTTTA
ACTTGGTCATTAGTCAAAAAAGTCATTAAAATTGATTAGCCTCTGCGATG
GAGTGCAAGGCTGAAAGCCACATGAATATGTTTCATCATATAAAAGGAAG
TTCATTCTATGGTGGCCTATCTTGAAGTGAAGGTGGTTGAACAAAATGTT
TATGGCATATTGATGGAACTGTCTGATGTAATTGTAAAATTTATGTGGTG
GGAGTTTGAGATAGTAATGTAATGTTGTTTGGGGAATTATGAAGTTCTCT
GGAATTTCGATTGCATTTATTCAGGTTGATTTTTTATGACTTCTAATGGT
ACTTTTTCTAACGAGTTTGATTACTCTGTTCTCACACTTATGTCTTTTTT
TTTGCGTCATTTTCCGTGATTACTTTTATTTATATTTTTAAAGACAGGTA
AGAAGGCATATTGATGTAACTGTCATAACGCTATAGACAGTTAGTCACAC
TAGCGTCCCGCCAAAATGCTTGACTCGCAAGCAAAAAAATGCGCCGCAAA
ACTTCTAAAGGGATTCATGAAAAAATAACCCGGCGCTTTGTGATGAAATT
AACATTTTCAAAAAACTATGACACGTGCGTTTGGTTTGGGAATGCGAAAC
ACGAACGCGAACTACCCATGTCTAAACTTTTCAGTATATCTCCAGAACTA
ACAGATTTTTTGAAATTCTGTAAAAAGGTACAAGTTATATACTGAATAGT
TTTACTATGTTCTGTGAAAAAATTTTTCACTGTTTCTGATCCTAAAGTGC
TATTTTTTGGTAAAAGCTATGCAATTTATGTTTGGATTTCTAGAAAGCTT
ACCCATTCATTGTCAATACATTTTTTATTTGAAAGTAATCTCTTCATGGA
ATAGAAAGATAATAGTCAAATCTTGTAGGGTCATTTTTCAAAAAAATTTT
GCCAAATTCGATTTTCGCATTTCGCCATTTTACCCTACGCAAACGCACGT
GATGAGAGATTGCCTAAAATTTGAGCCATAGATGAAAAAATTTGAGCCAA
GCCAACCTTGACAACTAATTTGAAGATCAACTTCCCAAGAAAAAGATCTA
CAGGGGAGACGGAACCCACCTAGATCTGCGCACCGCTGGATAGGCTATTT
CCCCAAAACTTTGCCGGACCTCAAACACTGACCTATTTACATGTGCATAA
TTATTTTTACTTTAACGTATAAACAAGGCCTTAAAAATTGAAGTGCTGTC
TCAGGAATTGAATCACAAAAAAAGTCAAGAATCAAATAAATTGGACATCC
GTTGAAATCGAACTCGGAGCCCCATGCATATGAGACAGACGTTCTAAAAC
CGCTTGAGCTAACCACGCTTTGAAAGTAGTGAACTGGTAAGAAAGAAAAA
GGAAAGAAAGAATCGAGAAGAAAATTAATTCCCGCTTTGATCTTATTATC
GAAACAAAAGGATCAGTAATGCCGAAATTCCTTTCCACACGTCAGCAATC
TACTTTTTATAAATAGCTTAAGGGAAGAAATTTTTGCGAGAAGAAATTTT
TGCGGAAGAAATTTTTGCGGAATTTAATTTCGCGAATTTGGGCGTAATTC
GCGAAATTAAATTCCACGAAACACACCAAAATTGATAAATCGCGAAATTA
AATTCCGCGAAATTCGATTTTTTTTCTTCTTCTTTTATTTTGCTGTTTTT
GACCAGGTATTACCAAAAAGATGGACACAATTGATTTTTAAGCATTATAA
CGTGTATTTTTTATCAAATATAAACAAATATAAACAACTCCGTGATGCTT
AAAAGTTAATCTAAGTTGATAAATTATTCTCAATCGCGAAATTAAATTCC
GTGAAACTTTTAAAATCGGCTCATTCGCGAAATTAAATTCCGCAAAATTT
GCCATTTTGAAACTCTGATTCGCGAAATTAAATTCCGTGAAACTTTTAAA
ATCGGCTCATTCGCGAAATTAAATTCCGCAAAATTTGCCATTTTGAAACT
CTGATTCGCGAAATTAAATTCCGCGAAAATTTCTTCCCTTAAGGTAGAAA
ACCTAGATTGTAAGGAAGATTCTAAAAAAAATAGCTGTTTTCTTAGACGA
CTACGTTAATACACTAATCAGATTAAATTTTGTGAGATTAAATTTCGCAA
GCGAAAAAAAATCACGAAATTTTGTGAGTCACAGTTTTGAAAAATTTTGG
GTGGATTTAATTTCGCAAATAAGCTTGAAAACAGCTGAAAAATAGCCATT
TTTTGCCACAAATGCAGACTTTAGACTGGTTTTTTCTGCCGAAAATGTGA
TTTTTGAAATTTTATGGTGGATTTAATTTTGTGAGTTAGGAATCTCACGC
GTTTTTGCGAGTTTTAATTTCGCAAAAATGGCAAAAATCTCACAAAAGTT
AATCCGATTGAAGTATGGCCCAAACATCAACATCTTTTTTAGGCCCAAAC
ATGGCCTGAACATCATTCACCACAGCATTACAACACAACTGCCCTGCGCA
GCCAGTCTAGTCTTAAACTCCTATATCAGGATTAGAAACTAGGCTAGTCT
TATCTTCTTTTATCTTTCCCTTTGCAACTTTTTTATCGGCATTTGGCCGA
TAAGTTTTAAACCCCCTCCCCCTTGCTCTTATCAGCCAACATTTTTTAAA
ACAAAGTCTTACCTTGAATACAATTTTCTTTTACTCACTCCGCCATCTTT
TTCATGTTGCTAACCCGCCCTGATGTCAAAAATTGAAACAAAATTTAAAA
TGATGTGATGTGACATTTTAAAAGAAAAGACTAAAGAAATAGCGCGCAGA
CCAATGGCAATGAAAGACAAATACTTTAGCAACGCTACCTCCAAAAAGTC
CCAAGTTTGTTCTTGGAGGCGAGAGTTAGTTGAAGTTCTGCTTTCAAGTG
GAATTATGGAAGAAAGAACAAGAAAATTGGTTGAAAATTATTTTTGTCCC
AATACTAACTTTTTTTATTGGTATATATGTAGCTTTTCTCAAAGTCTGTT
TCTCATAAAACTCATGAAAACTTTATTTTTAGGAAGAAGGAATACACATG
ATTCATTGACTAATACTAAAAAGGTTTGTACATCTGTTTTTTTTTGTATC
TTTAAAATATTTAGAGATTTAAAAATACATATGATAATATGTAAACAATA
CCTGAATCAATTTAAGCAAATCAAACTTTGAGCAGAAAATCCATTGAAGT
TTGATAGTTGAACAGAACTTGAGGATAAATGAAACAAATTAAGGCTAATC
TGGGCTAATAATATGTTTGGTCCAGGTTGTATCCTTGTAAAAGAATCAAT
ATAAATGATTAATAAAGAAAATTATCACTATGACTCAGTCAATAAAGATT
TGCTGGTAAGATATTCCTCTTTCTTGTAATTTCAGGATCCCTTTTATCCT
GTCAAGAAGCTTGTTGAGAATTATTTGGAGAAAACAAGTCCCATTTTAGA
TTATGGTTCAATTTATGAAAAATATCCACATGCAAAAAAAGCTTTGATTG
GTCAGGAACCAGAAAGAAGGTATCATTTTTTTTAACTGGTGTATTTCTTT
TACCTTCCCTAAGTCTCAAAGGATTACAAATTAAGGGTCGCAAATTTTTC
TTTTTGGGTCTTTTTAAGGGTACGAAAACCATAAAATTCAAAAAATAAGA
GTAAATGTTTTCAGTCTTTTTAAGGGATGGTTTTCAGAGGTTCGGTTGCC
GCATACCCAACAACATTCCCCAATCTTCGGTAGCTCACCCCCCACCATAT
GTTAAAAATCTTTTGGTTCTAAGCAATAGAGTTTTGAATTTTTTCTAATC
TTTTCACAGAATGGTATGGGAGGAGCAGGACTGTTCGCAATCCTTTCCTG
AGTCACCAGAAGCAGCTAATCTGGACCTTCTGAATTACCTCGAACAACGT
GATATGTGGCAACGCCATCAAAATCTTGAAATTCCAAAGTTTTGCATCGG
TAGCATTGTCGCGGTAACCAGGGCTGACCCCTATGCACCTGAAGGATGGA
CCAGGTTAGTTAGGCTACTTTACTGAAATATTGTGTATTTTGAATTCAGT
CATTCATTTCTAATAATAAGGGGCTTGTACCGTTGGTTTTAGTAACTTTA
ATGCCGATAATTTTCAGATGGTTTTTTTCAACGCATTCCTTGGCCCTTCA
AACATTGTTATGAGAAAATCAAAGTAAATCTTACAAAATAAGTTTCTATA
TTGATTCCATAAGAAATTTTTGACGGGGTAACCTTGCACAATATTCTGAT
TTTACTTTCGAAAGGTGCTCTCGTACATTTTAAAATAAAAAACTTGCATT
CATTTTAATAGGTTTGTTGGACTATGCATAAACAAGAATATATCGCAAAA
TAACAAAGGATCGAATTTTATACTGAGAAACGTAATCCAAGGN Coding sequence (CDS) from alignment at sc0000391:5498..11240- >TCONS_00021646 ID=TCONS_00021646|Name=TCONS_00021646|organism=Clytia hemisphaerica|type=CDS|length=2685bp|location=Sequence derived from alignment at sc0000391:5498..11240- (Clytia hemisphaerica) GTTTGTTGGACTATGCATAAACAAGAATATATCGCAAAATAACAAAGGAT CGAATTTTATACTGAGAAACGTAATCCAAGGNAATGGTATGGGAGGAGCA GGACTGTTCGCAATCCTTTCCTGAGTCACCAGAAGCAGCTAATCTGGACC TTCTGAATTACCTCGAACAACGTGATATGTGGCAACGCCATCAAAATCTT GAAATTCCAAAGTTTTGCATCGGTAGCATTGTCGCGGTAACCAGGGCTGA CCCCTATGCACCTGAAGGATGGACCAGGATCCCTTTTATCCTGTCAAGAA GCTTGTTGAGAATTATTTGGAGAAAACAAGTCCCATTTTAGATTATGGTT CAATTTATGAAAAATATCCACATGCAAAAAAAGCTTTGATTGGTCAGGAA CCAGAAAGAAGGAAGAAGGAATACACATGATTCATTGACTAATACTAAAA AGATGGCGACATGTACAGCGACATGTGCATTCAAAAATTTGAGAACATCC AGGATACTTTTAACCCAAAGCACGAGAAGCATTTCAGGTTTGTTGGACTA TGCATAAACAAGAATATATCGCAAAATAACAAAGGATCGAATTTTATACT GAGAAACGTAATCCAAGGNAATGGTATGGGAGGAGCAGGACTGTTCGCAA TCCTTTCCTGAGTCACCAGAAGCAGCTAATCTGGACCTTCTGAATTACCT CGAACAACGTGATATGTGGCAACGCCATCAAAATCTTGAAATTCCAAAGT TTTGCATCGGTAGCATTGTCGCGGTAACCAGGGCTGACCCCTATGCACCT GAAGGATGGACCAGGATCCCTTTTATCCTGTCAAGAAGCTTGTTGAGAAT TATTTGGAGAAAACAAGTCCCATTTTAGATTATGGTTCAATTTATGAAAA ATATCCACATGCAAAAAAAGCTTTGATTGGTCAGGAACCAGAAAGAAGGA AGAAGGAATACACATGATTCATTGACTAATACTAAAAAGATGGCGACATG TACAGCGACATGTGCATTCAAAAATTTGAGAACATCCAGGATACTTTTAA CCCAAAGCACGAGAAGCATTTCAGGTTTGTTGGACTATGCATAAACAAGA ATATATCGCAAAATAACAAAGGATCGAATTTTATACTGAGAAACGTAATC CAAGGNAATGGTATGGGAGGAGCAGGACTGTTCGCAATCCTTTCCTGAGT CACCAGAAGCAGCTAATCTGGACCTTCTGAATTACCTCGAACAACGTGAT ATGTGGCAACGCCATCAAAATCTTGAAATTCCAAAGTTTTGCATCGGTAG CATTGTCGCGGTAACCAGGGCTGACCCCTATGCACCTGAAGGATGGACCA GGATCCCTTTTATCCTGTCAAGAAGCTTGTTGAGAATTATTTGGAGAAAA CAAGTCCCATTTTAGATTATGGTTCAATTTATGAAAAATATCCACATGCA AAAAAAGCTTTGATTGGTCAGGAACCAGAAAGAAGGAAGAAGGAATACAC ATGATTCATTGACTAATACTAAAAAGATGGCGACATGTACAGCGACATGT GCATTCAAAAATTTGAGAACATCCAGGATACTTTTAACCCAAAGCACGAG AAGCATTTCAGGTTTGTTGGACTATGCATAAACAAGAATATATCGCAAAA TAACAAAGGATCGAATTTTATACTGAGAAACGTAATCCAAGGNAATGGTA TGGGAGGAGCAGGACTGTTCGCAATCCTTTCCTGAGTCACCAGAAGCAGC TAATCTGGACCTTCTGAATTACCTCGAACAACGTGATATGTGGCAACGCC ATCAAAATCTTGAAATTCCAAAGTTTTGCATCGGTAGCATTGTCGCGGTA ACCAGGGCTGACCCCTATGCACCTGAAGGATGGACCAGGATCCCTTTTAT CCTGTCAAGAAGCTTGTTGAGAATTATTTGGAGAAAACAAGTCCCATTTT AGATTATGGTTCAATTTATGAAAAATATCCACATGCAAAAAAAGCTTTGA TTGGTCAGGAACCAGAAAGAAGGAAGAAGGAATACACATGATTCATTGAC TAATACTAAAAAGATGGCGACATGTACAGCGACATGTGCATTCAAAAATT TGAGAACATCCAGGATACTTTTAACCCAAAGCACGAGAAGCATTTCAGGT TTGTTGGACTATGCATAAACAAGAATATATCGCAAAATAACAAAGGATCG AATTTTATACTGAGAAACGTAATCCAAGGNAATGGTATGGGAGGAGCAGG ACTGTTCGCAATCCTTTCCTGAGTCACCAGAAGCAGCTAATCTGGACCTT CTGAATTACCTCGAACAACGTGATATGTGGCAACGCCATCAAAATCTTGA AATTCCAAAGTTTTGCATCGGTAGCATTGTCGCGGTAACCAGGGCTGACC CCTATGCACCTGAAGGATGGACCAGGATCCCTTTTATCCTGTCAAGAAGC TTGTTGAGAATTATTTGGAGAAAACAAGTCCCATTTTAGATTATGGTTCA ATTTATGAAAAATATCCACATGCAAAAAAAGCTTTGATTGGTCAGGAACC AGAAAGAAGGAAGAAGGAATACACATGATTCATTGACTAATACTAAAAAG ATGGCGACATGTACAGCGACATGTGCATTCAAAAATTTGAGAACATCCAG GATACTTTTAACCCAAAGCACGAGAAGCATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00021646-exon-sc0000391-1575043694:10762..11240 | TCONS_00021646-exon-sc0000391-1575043694:10762..11240 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1575043694:6818..6858 | TCONS_00021646-exon-sc0000391-1575043694:6818..6858 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1575043694:6372..6505 | TCONS_00021646-exon-sc0000391-1575043694:6372..6505 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1575043694:5887..6081 | TCONS_00021646-exon-sc0000391-1575043694:5887..6081 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1575043694:5498..5579 | TCONS_00021646-exon-sc0000391-1575043694:5498..5579 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1510915933:10762..11240 | TCONS_00021646-exon-sc0000391-1510915933:10762..11240 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1510915933:6818..6858 | TCONS_00021646-exon-sc0000391-1510915933:6818..6858 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1510915933:6372..6505 | TCONS_00021646-exon-sc0000391-1510915933:6372..6505 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1510915933:5887..6081 | TCONS_00021646-exon-sc0000391-1510915933:5887..6081 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1510915933:5498..5579 | TCONS_00021646-exon-sc0000391-1510915933:5498..5579 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1491911889:10762..11240 | TCONS_00021646-exon-sc0000391-1491911889:10762..11240 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1491911889:6818..6858 | TCONS_00021646-exon-sc0000391-1491911889:6818..6858 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1491911889:6372..6505 | TCONS_00021646-exon-sc0000391-1491911889:6372..6505 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1491911889:5887..6081 | TCONS_00021646-exon-sc0000391-1491911889:5887..6081 | Clytia hemisphaerica | exon |
TCONS_00021646-exon-sc0000391-1491911889:5498..5579 | TCONS_00021646-exon-sc0000391-1491911889:5498..5579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000391 | supercontig | sc0000391:5498..11240 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR008991 | Translation_prot_SH3-like |
Blast
The following BLAST results are available for this feature:
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