TCONS_00021670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021670
Unique NameTCONS_00021670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021670 ID=TCONS_00021670|Name=TCONS_00021670|organism=Clytia hemisphaerica|type=transcript|length=702bp
gaaaaaataaaaggaaaataaagaatCATACCTCTTGCTTTCATCCACAA
TTGCATTCAATTGCAGCAATTTCAATAGTTTTATTTAACTCTAAAATTCA
TAAAGCATGAAAGCAAGTCGTTAACCATACACCTTCTAAAACCTTTCttg
caaaaaaacaaagtaaaagaaaaagattCATACCTCTTGCTTATATCCAC
AATCGCATTCAATTGCagcaatttcaatttctttttatatcTCACTCTAA
AATTCATAAAGTATGTACGCAAATCGTTAACCATGCCCCCTATGTAACCT
TTCCTGTGAAcaataaaaggaaaataaagaatCATACCTCTTGCTTTCAT
CCACAATCGCATTCAATTGCAGCACAATTCCAATACATAGTTTTTTCTAA
CTCTAAAATTCAAAACGAAGGAAGGCAAATCGTTAACCATACCCCCTTCT
TAAaactttcttgtaaaaaaaaataaaaggaaaaagaagagtCATACCTC
TTGCTTTCATCCACAATTGCATTCAATTGCagcaatttcaatttcttttt
atataactCTAAAATTTATAAAGCATGAAGGCAAATCGTTAACCATGCCC
CCCCCCTCTGTAAAATTTCCTtcgaaaaaataaaaggaaaataaagaTTC
ATACCTCTTGCTTTCATCCACAATTGCATTCAATTgcaacaatttcaatt
tt
Run BLAST on NCBI

transcript from alignment at sc0000391:226293..226994

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021670 ID=TCONS_00021670|Name=TCONS_00021670|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0000391:226293..226994 (Clytia hemisphaerica)
aaaattgaaattgttgcAATTGAATGCAATTGTGGATGAAAGCAAGAGGT
ATGAAtctttattttccttttattttttcgaAGGAAATTTTACAGAGGGG
GGGGGCATGGTTAACGATTTGCCTTCATGCTTTATAAATTTTAGagttat
ataaaaagaaattgaaattgctGCAATTGAATGCAATTGTGGATGAAAGC
AAGAGGTATGactcttctttttccttttatttttttttacaagaaagttT
TAAGAAGGGGGTATGGTTAACGATTTGCCTTCCTTCGTTTTGAATTTTAG
AGTTAGAAAAAACTATGTATTGGAATTGTGCTGCAATTGAATGCGATTGT
GGATGAAAGCAAGAGGTATGattctttattttccttttattgTTCACAGG
AAAGGTTACATAGGGGGCATGGTTAACGATTTGCGTACATACTTTATGAA
TTTTAGAGTGAgatataaaaagaaattgaaattgctGCAATTGAATGCGA
TTGTGGATATAAGCAAGAGGTATGaatctttttcttttactttgtttttt
tgcaaGAAAGGTTTTAGAAGGTGTATGGTTAACGACTTGCTTTCATGCTT
TATGAATTTTAGAGTTAAATAAAACTATTGAAATTGCTGCAATTGAATGC
AATTGTGGATGAAAGCAAGAGGTATGattctttattttccttttattttt
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012159XLOC_012159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021670-exon-sc0000391-1491911889:226293..226994TCONS_00021670-exon-sc0000391-1491911889:226293..226994Clytia hemisphaericaexon
TCONS_00021670-exon-sc0000391-1510915933:226293..226994TCONS_00021670-exon-sc0000391-1510915933:226293..226994Clytia hemisphaericaexon
TCONS_00021670-exon-sc0000391-1575043694:226293..226994TCONS_00021670-exon-sc0000391-1575043694:226293..226994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:226293..226994 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0970461	0	0	0.0866159	0	0	0.218724	0	0	0.0497034	0	0	0	0	0	0	0	0	0	0	0.23179	0.137912	0	0	0.0798733	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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