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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021671 ID=TCONS_00021671|Name=TCONS_00021671|organism=Clytia hemisphaerica|type=transcript|length=1856bp
AGATATTGGAAGAAATAGTAAAGTGTGGACTAGGCTACAATTGAGCAAGT
CTTATAATAAGAAATATTCTATTGTAAGCTAGCCCACCCCCTACCCTTAG
AAACCTATAAAATAAAGCATAATTTAGTGAGTGAGTCTTTCAAACAAAGG
ACTTACTTTGGTGTAATTGTCCTGTCCCTTTGATCAAAACATTTCGATGG
ATTACATTCCATTTTATCAGAACATTTGGGCCTGAAAAAATCTGTACGCA
CTTGCATAATCGACGTTAAGTACCTGAAACCATAACATGGAAAACATAAC
AAACCAGAGATTGTTTACATCCCTCTTAAGCAATGCCTTCAAAAAACCCT
TCAATTTTTAACCTTTTCAATTACCGTATATGAAATTAAATTGCCAGTTA
ATAACCATTCCCGTAAAACCTCTCTCCTGTAGATAAAAACACTGGCATTT
CCCTAAAGCTTGTACAAACAGGAACGATGAAAGAACTAAAGCTAGAAGGA
GCCTATTTCAGTAAATAGGACCAAAAACATTTGACCCGATAATTCATACC
TGGTATTTTCCATAAATCAACTCTTGATTTTCTCTATAACATCCAAGACA
AAATGCATTACCTGAAACACCGGTAAGTTTCTGAGTCCAAGGTGTTTTTC
AAGAcgattttgaagctcttgcaATGTCATGTCGGaaccaatcagataaa
aatcgGGTTGAAAATCGGGTTAAAAAATCGGGAAAAGATCGGGAAAGTTA
GCCAGTCGGGACTTTTTTtaacagtcggcttcaacaagACATTcgatgtt
tttaaaaactttgaaaactgaaccattcgtgttcaaaagtgttttctgca
AACCAGGTAAGCAATGTGGTTTTAAAGACATGAATGGTTCAGGCTCGAAG
GAAAGCGCATTGAAGTCTTCATTCCATGAATTAGAATGAACGAAGCAAAA
ATAGAAAGGTCTATCTACTTTATTAAGAAATTTCAGATCCTATCATAATA
AAGTTTAATGTAAACATATACAGATCATTAGCTGGTAAATAGATTTGAAC
ggacgaaaaaaataaaactaaacaTTCATACCTGTGACACAAAAGGCATT
TACCATTGCATTCAACTTTTTGATGTTGTGTTTTACCTAGTCCTGgaata
caatgtatagcaatgtgccctcccagttattaccataatggctttatggc
aactcctgaactttggcacaggatgtacggttagtCCTGGAATACAAAAG
TATACATGCCTAAAATCCACAATTGCAGCAATTCCAATAGTTTTATCTAA
CTCTAAAATTCATAAAGCATAAAGGCAAAACCGTTAACCATGCCCCCCCT
GTAACTTTGCAtgcgaaaaaaataaatgaaaataaagaatcaTACCTCTT
GCTTTCATCCACAATTGCATTCAATTGAAACAATTCCAATAGTTTTATAT
ACCTCTAATAAATTCATGAAGCATGAAGGCAAATCGCTAACCATGCCCCT
CCCCCTGTAGCCTTGAATGCGAAAAAATTAAAGGAAAATAAAGAATCATA
CCTCTTGCTTTCAtcaacaattgaattcaattacAACACAATTCCAATAG
TTTTATCTAACTCCAAAATTCAAAACGAAGGTAGGCAAATCGTTAAACAT
GCCCCCTTAATAAAACTttcttgtaaaaataaaaatcataaaaaccaTAC
CTATTGCTTTCATCCAGAATTGCATTCAATTGCagttatttcaatttctt
tttttatctaaCTCTAAAATTTATAAAGCATGAATCAGAAGGCAAATCGT
TAACCATGACCCTCCCTCTGTAAATTTTCCTtcgaaaaaataaaaggaaa
ataaag Run BLAST on NCBI transcript from alignment at sc0000391:231771..233626 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021671 ID=TCONS_00021671|Name=TCONS_00021671|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at sc0000391:231771..233626 (Clytia hemisphaerica)
ctttattttccttttattttttcgaAGGAAAATTTACAGAGGGAGGGTCA
TGGTTAACGATTTGCCTTCTGATTCATGCTTTATAAATTTTAGAGttaga
taaaaaaagaaattgaaataactGCAATTGAATGCAATTCTGGATGAAAG
CAATAGGTAtggtttttatgatttttatttttacaagaaAGTTTTATTAA
GGGGGCATGTTTAACGATTTGCCTACCTTCGTTTTGAATTTTGGAGTTAG
ATAAAACTATTGGAATTGTGTTgtaattgaattcaattgttgaTGAAAGC
AAGAGGTATGATTCTTTATTTTCCTTTAATTTTTTCGCATTCAAGGCTAC
AGGGGGAGGGGCATGGTTAGCGATTTGCCTTCATGCTTCATGAATTTATT
AGAGGTATATAAAACTATTGGAATTGTTTCAATTGAATGCAATTGTGGAT
GAAAGCAAGAGGTAtgattctttattttcatttatttttttcgcaTGCAA
AGTTACAGGGGGGGCATGGTTAACGGTTTTGCCTTTATGCTTTATGAATT
TTAGAGTTAGATAAAACTATTGGAATTGCTGCAATTGTGGATTTTAGGCA
TGTATACTTTTGTATTCCAGGactaaccgtacatcctgtgccaaagttca
ggagttgccataaagccattatggtaataactgggagggcacattgctat
acattgtattcCAGGACTAGGTAAAACACAACATCAAAAAGTTGAATGCA
ATGGTAAATGCCTTTTGTGTCACAGGTATGAAtgtttagttttatttttt
tcgtccGTTCAAATCTATTTACCAGCTAATGATCTGTATATGTTTACATT
AAACTTTATTATGATAGGATCTGAAATTTCTTAATAAAGTAGATAGACCT
TTCTATTTTTGCTTCGTTCATTCTAATTCATGGAATGAAGACTTCAATGC
GCTTTCCTTCGAGCCTGAACCATTCATGTCTTTAAAACCACATTGCTTAC
CTGGTTtgcagaaaacacttttgaacacgaatggttcagttttcaaagtt
tttaaaaacatcgAATGTcttgttgaagccgactgttaAAAAAAGTCCCG
ACTGGCTAACTTTCCCGATCTTTTCCCGATTTTTTAACCCGATTTTCAAC
CcgatttttatctgattggttCCGACATGACATtgcaagagcttcaaaat
cgTCTTGAAAAACACCTTGGACTCAGAAACTTACCGGTGTTTCAGGTAAT
GCATTTTGTCTTGGATGTTATAGAGAAAATCAAGAGTTGATTTATGGAAA
ATACCAGGTATGAATTATCGGGTCAAATGTTTTTGGTCCTATTTACTGAA
ATAGGCTCCTTCTAGCTTTAGTTCTTTCATCGTTCCTGTTTGTACAAGCT
TTAGGGAAATGCCAGTGTTTTTATCTACAGGAGAGAGGTTTTACGGGAAT
GGTTATTAACTGGCAATTTAATTTCATATACGGTAATTGAAAAGGTTAAA
AATTGAAGGGTTTTTTGAAGGCATTGCTTAAGAGGGATGTAAACAATCTC
TGGTTTGTTATGTTTTCCATGTTATGGTTTCAGGTACTTAACGTCGATTA
TGCAAGTGCGTACAGATTTTTTCAGGCCCAAATGTTCTGATAAAATGGAA
TGTAATCCATCGAAATGTTTTGATCAAAGGGACAGGACAATTACACCAAA
GTAAGTCCTTTGTTTGAAAGACTCACTCACTAAATTATGCTTTATTTTAT
AGGTTTCTAAGGGTAGGGGGTGGGCTAGCTTACAATAGAATATTTCTTAT
TATAAGACTTGCTCAATTGTAGCCTAGTCCACACTTTACTATTTCTTCCA
ATATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021671-exon-sc0000391-1491911889:231771..233626 | TCONS_00021671-exon-sc0000391-1491911889:231771..233626 | Clytia hemisphaerica | exon |
| TCONS_00021671-exon-sc0000391-1510915933:231771..233626 | TCONS_00021671-exon-sc0000391-1510915933:231771..233626 | Clytia hemisphaerica | exon |
| TCONS_00021671-exon-sc0000391-1575043694:231771..233626 | TCONS_00021671-exon-sc0000391-1575043694:231771..233626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:231771..233626 . |
Blast
The following BLAST results are available for this feature:
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