TCONS_00021685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021685
Unique NameTCONS_00021685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1117

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021685 ID=TCONS_00021685|Name=TCONS_00021685|organism=Clytia hemisphaerica|type=transcript|length=1117bp
Ataatatttaaataaatatttaattcatttacaaaattctaaaaacaaag
CCTTTACAAAAAGCTTTCATTAATTTACGTATGATAAACTAAAAAGTGAT
TGCTACAGAAAGATAAAACAACCATAAAAGTATATGCTTaatattaaaat
cttttttaaaatcaaacttttcaaaccaTTTATCTAGTCCTATCATCATA
TCTGTCTAGTAAAGTCTAGTCCTGGAAAATCTACAATAATTATACTTGCC
TTTAAAAGCATTATGAGAAGAGAAATGTCCGGTCAGGGAAACATCAGTCG
GGTAAATATCTGGTCATAGTCGGGGAAAATTCCGTTCGTGGAAAACCCCG
TCTGGGAAATGTCAAGTCGGGGAAACATCCGTCGGGGGAAACGTCCGTCG
GGGAAATGCTCGTCGGGGAAATGTTCGTCTGGGAAATGTTCGTCGGGGAA
ATGTTCGTCGGGGAAACGTTCGTCGGGGAAATGTTCGTCGGGGAAACGTT
CGTCGGGGAAACGTCTGTTGAGGAAATGTTCGTCGGGGAAATGTTCGTCG
GGGAAACGTCTGTTGAGGAAACGTCCGTCGGGACAAGTCCAGTCACAATT
ACACGATCGACTCATTTCCATCCGATGGTCTTTAGTTATACGAACTTCAA
TATTGTAGATAAGCGCCTTCAATAAACCATCATTTTGTTACATAACCAAT
CGTTTTAAAATATCATCTTTCAATAAAACAAGTGATGCAACCCAAACCAA
ATCGTATATTATTCAaactgtcgtcaaaaatgcgaccaaaaatctcaaaa
cgcAATCTAAATACATTTGACTTTCGCCAATTtgaactcgaacggggaat
cttatgTTGTATTTTAAGATGGCTTCTCCTTGACAGGGATTGGAAACAAG
CTTAAAtgatagaaagattcgaatagtaccttaaaggaagaaattttcgc
ggaacctAATTTCGtagttcacagctcaaaattgggaagtttcgcgggaa
tttaatttcgcggttggaagaattttttgtttaaaatatcgccttttttg
ccctaaaaagaccaattttagaggCGATTTTCCAAATCTTGAGAATCTAT
TGAGACTGTTTATTTGT
Run BLAST on NCBI

transcript from alignment at sc0000393:42946..44153+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021685 ID=TCONS_00021685|Name=TCONS_00021685|organism=Clytia hemisphaerica|type=transcript|length=1208bp|location=Sequence derived from alignment at sc0000393:42946..44153+ (Clytia hemisphaerica)
Ataatatttaaataaatatttaattcatttacaaaattctaaaaacaaag
CCTTTACAAAAAGCTTTCATTAATTTACGTATGATAAACTAAAAAGTGAT
TGCTACAGAAAGATAAAACAACCATAAAAGTATATGCTTaatattaaaat
cttttttaaaatcaaacttttcaaaccaTTTATCTAGTCCTATCATCATA
TCTGTCTAGTAAAGTCTAGTCCTGGAAAATCTACAATAATTATACTTGCC
TTTAAAAGCATTATGAGAAGAGAAATGTCCGGTCAGGGAAACATCAGTCG
GGTAAATATCTGGTCATAGTCGGGGAAAATTCCGTTCGTGGAAAACCCCG
TCTGGGAAATGTCAAGTCGGGGAAACATCAGTCGGGTAAATGTCTGGTCA
TAGTCGGGGAAAAGTCCGTTCGTGGGAAACCCCGTCTGGGAAATGTCAAG
TCCAGTTTGGGGGAAACATCCGTCGGGGGAAACGTCCGTCGGGGAAATGC
TCGTCGGGGAAATGTTCGTCTGGGAAATGTTCGTCGGGGAAATGTTCGTC
GGGGAAACGTTCGTCGGGGAAATGTTCGTCGGGGAAACGTTCGTCGGGGA
AACGTCTGTTGAGGAAATGTTCGTCGGGGAAATGTTCGTCGGGGAAACGT
CTGTTGAGGAAACGTCCGTCGGGACAAGTCCAGTCACAATTACACGATCG
ACTCATTTCCATCCGATGGTCTTTAGTTATACGAACTTCAATATTGTAGA
TAAGCGCCTTCAATAAACCATCATTTTGTTACATAACCAATCGTTTTAAA
ATATCATCTTTCAATAAAACAAGTGATGCAACCCAAACCAAATCGTATAT
TATTCAaactgtcgtcaaaaatgcgaccaaaaatctcaaaacgcAATCTA
AATACATTTGACTTTCGCCAATTtgaactcgaacggggaatcttatgTTG
TATTTTAAGATGGCTTCTCCTTGACAGGGATTGGAAACAAGCTTAAAtga
tagaaagattcgaatagtaccttaaaggaagaaattttcgcggaacctAA
TTTCGtagttcacagctcaaaattgggaagtttcgcgggaatttaatttc
gcggttggaagaattttttgtttaaaatatcgccttttttgccctaaaaa
gaccaattttagaggCGATTTTCCAAATCTTGAGAATCTATTGAGACTGT
TTATTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012171XLOC_012171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021685-exon-sc0000393-1491911889:42946..43321TCONS_00021685-exon-sc0000393-1491911889:42946..43321Clytia hemisphaericaexon
TCONS_00021685-exon-sc0000393-1510915933:42946..43321TCONS_00021685-exon-sc0000393-1510915933:42946..43321Clytia hemisphaericaexon
TCONS_00021685-exon-sc0000393-1575043694:42946..43321TCONS_00021685-exon-sc0000393-1575043694:42946..43321Clytia hemisphaericaexon
TCONS_00021685-exon-sc0000393-1491911889:43413..44153TCONS_00021685-exon-sc0000393-1491911889:43413..44153Clytia hemisphaericaexon
TCONS_00021685-exon-sc0000393-1510915933:43413..44153TCONS_00021685-exon-sc0000393-1510915933:43413..44153Clytia hemisphaericaexon
TCONS_00021685-exon-sc0000393-1575043694:43413..44153TCONS_00021685-exon-sc0000393-1575043694:43413..44153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:42946..44153 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75849	1.21111	5.12964	6.15423	11.2916	8.157	7.02958	6.82323	3.25419	4.46839	3.68424	3.13489	1.7107	2.12746	1.40842	1.80762	2.67397	1.92885	1.49364	1.3757	1.7973	2.29252	2.33204	1.91711	10.9285	8.7845	2.67151	1.84613	1.3446	0.593238
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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