TCONS_00021716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021716
Unique NameTCONS_00021716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021716 ID=TCONS_00021716|Name=TCONS_00021716|organism=Clytia hemisphaerica|type=transcript|length=707bp
caaaaaattgattttgtatcggaaatccaggagtttcaattgcttttgta
ttggaaatccaggaatttcaaaaaaacattttgcctcGGAATTCCGCTGT
CGTCCNACAACACGAGCTCGAAAATTTTGATCTCTGCATCTTCAGAATCT
ACAAGCAAAGAAAAGGAAACTGCTGCTTGTGATACAAATGTCAACGCCAC
AAAGCTTACTTTAAGAGCTGTGAAGTCTGGTGATACATCTGCGTGGACAC
CGATTGCTGTCAGTGAAGAAATCTCCCCAGAGGAACAGTCGGAAAAGCTG
AAACGGGAAATGCAACAATTGGTGTTCTACAACCCTGGGCCGTCTACTCA
AGACTTACTTGGTTTCAAACCTGAATTCAGTAACCGTGAAAAGCGAAAGT
TGAACCGTCTTCTTGAAGACAAGAATGGTGGAAGTTCAGGGGACGAAGCA
CCGAAACGGTCTGGACGTAAACCTGCGAAGCAAGTCATAACACTACACGA
TGAAAAAGGTTGTGTTCGTGAAACCGGCGAGGACGTTTGTGATTGTATGA
TCACTGACTGTCCGGGTTGTCACTTCCCGTGCGGCAAGTGTGATTCGGAG
AAGTGTGGCTCTGTTTGCAGGAATAGTCGGCGATGGACGTACGATGTTGT
GTATTATAATATCAAATGATCTCTAATATGGATGGATAGGTGAGACTTAG
ATTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00021716-protein

>TCONS_00021716-protein ID=TCONS_00021716-protein|Name=TCONS_00021716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
QKIDFVSEIQEFQLLLYWKSRNFKKTFCLGIPLSSXNTSSKILISASSES
TSKEKETAACDTNVNATKLTLRAVKSGDTSAWTPIAVSEEISPEEQSEKL
KREMQQLVFYNPGPSTQDLLGFKPEFSNREKRKLNRLLEDKNGGSSGDEA
PKRSGRKPAKQVITLHDEKGCVRETGEDVCDCMITDCPGCHFPCGKCDSE
KCGSVCRNSRRWTYDVVYYNIK
Run BLAST on NCBI

transcript from alignment at sc0000393:261706..271221+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021716 ID=TCONS_00021716|Name=TCONS_00021716|organism=Clytia hemisphaerica|type=transcript|length=9516bp|location=Sequence derived from alignment at sc0000393:261706..271221+ (Clytia hemisphaerica)
caaaaaattgattttgtatcggaaatccaggagtttcaattgcttttgta
ttggaaatccaggaatttcaaaaaaacattttgcctcGGAATTCCGCTGT
CGTCCNACAACACGAGCTCGAAAATTTTGATCTCTGCATCTTCAGAATCT
ACAAGCAAAGAAAAGGAAACTGCTGCTTGTGATACAAATGTCAACGCCAC
AAAGCTTACTTTAAGAGCTGTGAAGTCTGGTGATACATCTGCGTGGACAC
CGATTGCTGTCAGTGAAGAAATCTCCCCAGAGGAACAGTCGGTAAAAATT
TATTGTTTATGTTTTGagtttttcacaaaattcttttgtcatACTTTGTA
ATTCTCAAACTACCACATTAtagttaccgtcaactgctctaacttgtgac
tatctgacaaaacatggtatggcaattcggccaccatttcattGAACAgt
ctccaaagtcatttgatttgatttggtgtgaaggcttcttcataaaaaag
acgaaagacatgtatctatttttcggatccggtatgcgggaatagtgtca
ggacctgcaggcgaccaagtagggttgggtatgggtgtggtttaggtgtg
gttacgtatcagattggctaggaattggcagtgcagctggaacctcgata
ttcatTCCANTTCAATACACAagtccacacatattttttttctcaagaat
tattttgagcaggaaaaaattataattgcaatattgacacttttcttttg
tttggagttagtgcacaaaggtttctagacgactaaaattgttccactca
atactttttgctttatttctactagtcgtctagcttgctagactacattA
ATTGGTGACTGGGAATAAGGTGAATGTCGTGTGGTTGCTTTGGTCTTAGC
CTTTCTTCacatgtttctactttttggactgatgaaatttgtaagtgaGA
CTNCTGttaggggccgtcgacaaacgactttccttttttttaacggcctg
aggccgttaaggttcagaccccctccccccctacGTCTTAGCGGCCAAGA
AAATTCTGCAAAAGTAAATACTTTCACTGGTCCATGGCCGCCATGTTCTT
TCGATTCGTAATcctcaaagttcttcttttcgcaTGGAaaaaacatgtgg
ttttgagccgtgacctttcaattttgaaactccaaGCCCCGCAGCAAGTC
AGGgcgggatgggtggagcaaggaGTCAACTGAGGTGGAGGGAAAAATTG
CCAACTTTCGTCACGTGACCAGTCATTTTTCTCGTCGCAGCATTAattgt
agactggagtcgtttataatgcgtgtaatactaataataccaataccaat
actaataataataatacgggatttagtttgtataaacgactggaagaatc
tggtgttccagccttatagatacaggggctagctacgcagaaacttgcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgatattctttga
aggaaaaatgtcagaaacaaacccaaagaccaaaagatgtattttgttgt
tgagaatcgatcctgtgaaaataaaaaaatttctgctatgggTTTTTTCG
GAATGCTAAAAAACTCGATTTTCGATCTTCcgtaaggtaaagaggttgca
agatttgggttagcgaggcaaaaatcgctaaaaagctggtaaaatcgtaa
tcctcaaaaatcgaagttccagcttcactgattgggttattatcagttag
ggttagggttggagctcgaaacaagcactattttgtgattttctcttaat
acagtctggtctgcagtttgtacaatataaatagccgttaGAAGCGCTAT
CCTGGCATGAATCTGTGGCGTAGTGGATAAGGcaatgggtttcaaaacat
cggaactttgtagtgggttcgaatcccaccggtggcgatctgtcggtaag
tcaatcggtaagttagaaaacatagaaaataactaacaaagaaccagaaa
gtcagaaaaactacgaacaagagactggaaagtacgaaataagtccagat
ctgtctttcgtctttgtgaagaagccacAAACANgactggaaagtacgaa
ataagtccagatctgtctttcgtctttgtgaagaagccacgaccatTTGA
TTTCAGGAACGGTGTAGTAGGCgacaatctaaaatatgttctgttcgcgT
CATAAAACATCTgcaaatccagtcggtcggtcggtcggtagtaaattttg
tcaagttttttaaatctagtaaaTCACAAAGAATCAAGCGGCAATTAACA
AAATCTattgccgccatctttgatttgccAAATTAGATGTGCGCGCGCAT
GTGTGAACCTTAAAAGCAGACCTTATTTTCGGCTCTCGgggtattggccc
taccgcgTCTCTGAATttcgacttgaaaatttcaataagggtacatgaaa
aaaaCTCAGAcaggactcaatgtgggttaagtaaacaaaaactcgTAGCA
AATGATGATTCAAAGAAGTGCTTagctatcaaaaactttttccgacaTTT
TTCCGACTTTTCCGACTTGGGATTAatgttttgaaggtgagtcggtcgga
cgacgcgaacggaacatattttagcTTGCCGcctattaaaaaatacatga
tttctctttcaattttacagtaagtgcaggtaagtgaaaatacagaccag
atatgcaacagtcccatttttcgaccaattgtcccaagttagagcagttg
atggtaggAGACTTATTTCATAATCTTAGCATCTTTTAAGACACAATAGA
CTTTTTcacatttcattttcatcacaTGACCCTTGACGGACGGGTGTTTA
ACGAGAATGGAAATGCAGTCCAGCCAGCTTTCTGTGTGATTTTGAGCTCg
atattttgtaaataaattgCCGTATGGAacaagaaaaaattaagttaaag
CTGTAATAAGTTTACTGTTTACTGTTTTCCGGAGAGcagcttaaaaaaaa
agaactatttTTCGCTCTGGAAAGTTTCAGAGCTCTTCCGGTGCTTTCAG
AGCCAGTGATTTTTAGCACGTTCTAAAAACCATTTAAACATAGTTacaca
aaaatatttgtccccAGGTAATGGACTTTGGTCAAATAAAATACTTACAG
TCTTGATGGATTGATGTTTTTGGCTCATTTGTGTTGTTAAATGGTGAGTT
TATGAACACAAAAATACAAGTGTGTGCCCAGCTGAAATGTGAATTGAATG
TGAATTCTATGAACAATACATTAGAAAAACTTTTGGATATTTGAGTTCCC
CTAACATTGTAGAAtacataccgtgagtggtcctaaatccgacagccctg
cttaaatccgacccccaaataactgctatgaaaacttttttatgtttaca
aacattccctctccaagttgaacaataaactattgcaagaactctcgaaa
caaaacatctaacaagatgactaaaatgtcaagatgtcaattaatgtgat
caaaaacgtgtgaattgtaaaaaaaaattacctctattattgattattct
gaatccgttgcttgtgtttaaaatgttaacaattttgtaataaaaaatta
tattttgtatataagtaagaagcaattattgttatttggttcaattggtt
cagtgtatcaattctctcagtttagttgaatctgtggtatcttcattgcg
tcacagaaAAAGAGTGaattaaaacctttaaatcaacCAAATTCTTTCCG
CCATTATCCATATAGTCATTTGGGAGAATGCGACAGTCTTTTGAATTAAT
AATACCCCATATTTCCCCtactatctatctatctatatatttaagtagtA
ACAAAACATACATGTTCGTTCTCCCTATATATAAAAACattgaacaaaaa
aatataaatgaaaatgagtaaaaataaaatgtttggttctttattcaaaa
ataatttataatataaaattccTAAAGAAAAAGCTCATATCGAACCGAGG
ATAAGTAGTAAAGTTGAGAATTAAAGGCTGAGAATATTGACACAAAGCTT
AACATAATGGCTTGGTGCTGAGAATACCAAAATGTGAAGGCAGGGCGGTA
TTGAAAACTAGGAGTTGAAATTAAGTTGAATCCTCAAACTGAAAATGTAA
ATTGGCGTGATGAGAagttcaagtcaaaaaaataaatactaaaTGAGTTA
AGATAAGATAGATTAGATAAATAGctataaacatttaaaatatttttatg
gttTCAGAGAGAAAGGTTTCAAGATGAGTGATGTAAGAAAGAGTAAGGTG
AACAAAGgcaaagaatttaaaattagtGAGAATAAAAACATGGGTGAAGG
CTAACCTAAACTTGCAACAAAATAGGAAGTTTCATTAGcttcatgcaaaa
taaaaaggtaagataaattaaataaataaaaatatatgtaaATAAATCAC
TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGGGCCAAGGCAACCTGGT
GTTAGTGATTAAGAAAACACAAGAGGCTGATACACAagggaaaaaaaaat
aataataccaTATGATCTAGTTTCTGTCAAAATAAGacgaaatttcgatt
ttaaattcatttctattttcaatattcaataCTTCTTTTGGCAACTCATT
CCACCATTTAACAGTTATActactgaaccaaatttaaagtaacaaatcaa
aatttaagtacCTTCCTCTTTCTTATTGTATTAAAATTCAAGTTCATATC
TTGATCCTGATGGTATTGTGTTTTTTGGACCACCAGGTATAAAGAAATCT
TGAAAggtcattttgtcatttttttgtcattctgGTCAGCTGAATGATTG
ACACATTTTTGCCTATTTGACCGGGTGTTTTTGTAAGATAAGATGCTGAA
GTTTTATTAAATTATGCCAAACACAACTGTCCTAAGTTTTCCCAGATTTA
CATATTGCAGAAATTGTTGACACCAGACAAGTGTGATTTTTAAATGATTC
AGGTTCAATGTTTGGATTGTCTGGTTGTAAAAAGCAGTTGGGCACATTCT
TACGATTGAATGTGGTGTGTACCGTGAGATcggataacttgcatcagtag
aggctaatatgcatagccctcaaatgaatgacctggctggtcattaaaat
acaaaattaaatcaaacaaaaatggtagagtagagctgtgagcggagctg
caaagttcatttgttttgaaattttgctgctttgatggGTCAGTCGTTTG
AGGGCTATGcgtgtttgcctccactgatgcaagttacccgatctcacggt
acacACCACAAtgtgaacaaaaaaattgtatCATACCATcgtatttatat
ttatattgataggtcgatttttgacgtttttgaccactttctgaaagtaa
ataTTTCATTCTTTTGATCATCACTTTAAAGATCCAGTGGTCAAAATAAG
GTTTTTATCCTGTTCGGTTATTTTAGTGAATCAGTCATGTTTAGTGTCAC
CCGAAGCCCGACCTGATGGGCAGAAAATTTGTCCCTTCTAGATGCATGGC
TTTAAAACCCTTTTTTTTTCACGTCCATTAGTTTTTCTAAATGGACTTGG
AACAAAGAATGGCATCGAGTGCTTTTCAAAGCTTtttaaattatcaaaac
aaatatatACAAATCTCTCGACTTGAAATGCGGCgccaatgtttaaaaat
tgactttaatgttttttcttacatttcttttgcatcgaacgttttaattg
cattcgaaatttattttgtgagaaagaaaatcaataaacaacaataaaag
aaagacataNNNNNNNNNNNNNNNNNNNNNNNNNNagagaagagaaaaat
ataaaactctcagtgtaatttctgtaatttactttcctaactgggaaaaa
gtagtgaaagccattgtgcgattagctcgtaatcacatacacgttttttt
tctttaaccctattcgtactaggggggggggctctttctgttcggaagtc
aaactattggtaatagctcctgaaataatagagcttttgccgtgaaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaa
gaaacacacttttaagaaacatgaggctcaaaatgcctaaaaactaagaa
acatctaagaaacatgctgaggctgagaatgaaaaaatagcattttttcc
aatcaaggttccagaaatatacatacataacagttagaaacacttgagaa
agtcagaaaatcaatataaaagataggaaagtaccgtagattagtctatt
agactattgtattatcgacatgcgtcctttaagcttgacaaagtttagaa
acatgtaagaaacatttaaggctcaaaaggccaatttcttaagaaacatc
gaGGCTGCTGATTTTTTCGTTTctaattaataaaaaaaaatcactcgtgc
aattatattcgaattgcactcgttatcatgtgattacatatacttatGCT
TATGAAAAATTCCAGAAAATTCATGTATTTAACAAATTGCAAAAATTCTT
CGTCGCTGTTTTTTCAATGGCGACACGAGAACCTATTTTTTTAGCTTAGG
AAACACACAATAGAAACTCGACTGCTTAAATTTGAACCTACTTAAAGTCA
TCATACATTCTTGGGCCATGCCATTTTATATTCATACAGGAGGCGGACCA
ACATAAGAACGATTTTAGTTCACCTAGCCTCCACCCTCACTTTATggtat
taataatttttttcaaatttttgccattttccagggggtatactCATATT
TCTAAGAACctttttttgccttgaaaaggttcgtctatcccccctgtatg
gaaatttaacgGAACAGCCTATTCCATTTTTTAGGAAAAGCTGAAACGGG
AAATGCAACAATTGGTGTTCTACAACCCTGGGCCGTCTACTCAAGACTTA
CTTGGTTTCAAACCTGAATTCAGTAACCGTGAAAAGCGAAAGTTGAACCG
TCTTCTTGAAGACAAGAATGGTGGAAGTTCAGGGTATGTTTTATATTATT
CATTTTATAAGTTTACATTAATTTTAAGGCGTAcctatacagtgtgtccc
aaaaaaaagcgAACACATTTAtacaaagtaaaatcctcaaaactcattaT
CTGAACTGGGcttagaataattgattgaAGATATAACAATTCTCTGTTCA
AATTTTAAGCCCAGTTTAGATAATGAGTTATGAGTaatttactttatata
aaaatttgtccgtTTTTTGGGACAATTTTCTACGGATTAGTTCGTAGATT
TGAAGTGATCTGAACAATGACATCATATAATGATATTAAAAAACTCCGGA
TATTTTGAAATGGTCAGGGTAATATTTTGGTGAAATGGGTTTGAAGTCTG
AACAAATAGCCTGTTGAAAAAGGGTTTTATCATTAATTTTGTTCACACCA
AACGTACTGTGGCTAATTTTTCTGGaccatatttttttaattctgcCATA
GAAAGACGAATAACTGTGATAGAGTAATGTTCTATTAAGTGCAATATACg
agcaatagacgatatcggctttacatgaaaactcagatttgatccccgag
aattccccacaatgctttgcgcggaaaaaagttcacggtaaaattttttc
cgcacaaagcattgtggggaattctcggggatcaaatctgagttttcatg
taaatccgatatcgtctattattaTCCGTGTGAGAGGGCGATACTCGATA
TAAATAAAATGACCCAATcgatttgtaaaaattttgcaaatcaaaGTGAC
GATAAACTCGAGATATAATCTATATACTATCTCTCAAATTCGGGATTTTG
GCTTCGGTCAATATTTTACCATATTGCCCTCTTAAACAGTCAATAGGGTT
ATTAATAAATGTAGAAGTAAATAAAGAATAATTTAATAATAACACACAGG
GACGAAGCACCGAAACGGTCTGGACGTAAACCTGCGAAGCAAGTCATAAC
ACTACACGATGAAAAAGGTTGTGTTCGTGAAACCGGCGAGGACGTTTGTG
ATTGTATGATCACTGACTGTCCGGGTTGTCACTTCCCGTGCGGCAAGTGT
GATTCGGAGAAGTGTGGCTCTGTTTGCAGGAATAGTCGGCGATGGACGTA
CGATGTTGTGTATTATAATATCAAATGATCTCTAATATGGATGGATAGGT
GAGACTTAGATTTGAA

Coding sequence (CDS) from alignment at sc0000393:261706..271221+

>TCONS_00021716 ID=TCONS_00021716|Name=TCONS_00021716|organism=Clytia hemisphaerica|type=CDS|length=2007bp|location=Sequence derived from alignment at sc0000393:261706..271221+ (Clytia hemisphaerica)
caaaaaattgattttgtatcggaaatccaggagtttcaattgcttttgta
ttggaaatccaggaatttcaaaaaaacattttgcctcGGAATTCCGCTGT
CGTCCNACAACACGAGCTCGAAAATTTTGATCTCTGCATCTTCAGAATCT
ACAAGCAAAGAAAAGGAAACTGCTGCTTGTGATACAAATGTCAACGCCAC
AAAGCTTACTTTAAGAGCTGTGAAGTCTGGTGATACATCTGCGTGGACAC
CGATTGCTGTCAGTGAAGAAATCTCCCCAGAGGAACAGTCGGAAAAGCTG
AAACGGGAAATGCAACAATTGGTGTTCTACAACCCTGGGCCGTCTACTCA
AGACTTACTTGGTTTCAAACCTGAATTCAGTAACCGTGAAAAGCGAAAGT
TGAACCGTCTTCTTGAAGACAAGAATGGTGGAAGTTCAGGGGACGAAGCA
CCGAAACGGTCTGGACGTAAACCTGCGAAGCAAGTCATAACACTACACGA
TGAAAAAGGTTGTGTTCGTGAAACCGGCGAGGACGTTTGTGATTGTATGA
TCACTGACTGTCCGGGTTGTCACTTCCCGTGCGGCAAGTGTGATTCGGAG
AAGTGTGGCTCTGTTTGCAGGAATAGTCGGCGATGGACGTACGATGTTGT
GTATTATAATATCAAATGAcaaaaaattgattttgtatcggaaatccagg
agtttcaattgcttttgtattggaaatccaggaatttcaaaaaaacattt
tgcctcGGAATTCCGCTGTCGTCCNACAACACGAGCTCGAAAATTTTGAT
CTCTGCATCTTCAGAATCTACAAGCAAAGAAAAGGAAACTGCTGCTTGTG
ATACAAATGTCAACGCCACAAAGCTTACTTTAAGAGCTGTGAAGTCTGGT
GATACATCTGCGTGGACACCGATTGCTGTCAGTGAAGAAATCTCCCCAGA
GGAACAGTCGGAAAAGCTGAAACGGGAAATGCAACAATTGGTGTTCTACA
ACCCTGGGCCGTCTACTCAAGACTTACTTGGTTTCAAACCTGAATTCAGT
AACCGTGAAAAGCGAAAGTTGAACCGTCTTCTTGAAGACAAGAATGGTGG
AAGTTCAGGGGACGAAGCACCGAAACGGTCTGGACGTAAACCTGCGAAGC
AAGTCATAACACTACACGATGAAAAAGGTTGTGTTCGTGAAACCGGCGAG
GACGTTTGTGATTGTATGATCACTGACTGTCCGGGTTGTCACTTCCCGTG
CGGCAAGTGTGATTCGGAGAAGTGTGGCTCTGTTTGCAGGAATAGTCGGC
GATGGACGTACGATGTTGTGTATTATAATATCAAATGAcaaaaaattgat
tttgtatcggaaatccaggagtttcaattgcttttgtattggaaatccag
gaatttcaaaaaaacattttgcctcGGAATTCCGCTGTCGTCCNACAACA
CGAGCTCGAAAATTTTGATCTCTGCATCTTCAGAATCTACAAGCAAAGAA
AAGGAAACTGCTGCTTGTGATACAAATGTCAACGCCACAAAGCTTACTTT
AAGAGCTGTGAAGTCTGGTGATACATCTGCGTGGACACCGATTGCTGTCA
GTGAAGAAATCTCCCCAGAGGAACAGTCGGAAAAGCTGAAACGGGAAATG
CAACAATTGGTGTTCTACAACCCTGGGCCGTCTACTCAAGACTTACTTGG
TTTCAAACCTGAATTCAGTAACCGTGAAAAGCGAAAGTTGAACCGTCTTC
TTGAAGACAAGAATGGTGGAAGTTCAGGGGACGAAGCACCGAAACGGTCT
GGACGTAAACCTGCGAAGCAAGTCATAACACTACACGATGAAAAAGGTTG
TGTTCGTGAAACCGGCGAGGACGTTTGTGATTGTATGATCACTGACTGTC
CGGGTTGTCACTTCCCGTGCGGCAAGTGTGATTCGGAGAAGTGTGGCTCT
GTTTGCAGGAATAGTCGGCGATGGACGTACGATGTTGTGTATTATAATAT
CAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012184XLOC_012184Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021716-proteinTCONS_00021716-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021716-exon-sc0000393-1491911889:261706..261996TCONS_00021716-exon-sc0000393-1491911889:261706..261996Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1510915933:261706..261996TCONS_00021716-exon-sc0000393-1510915933:261706..261996Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1575043694:261706..261996TCONS_00021716-exon-sc0000393-1575043694:261706..261996Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1491911889:269890..270038TCONS_00021716-exon-sc0000393-1491911889:269890..270038Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1510915933:269890..270038TCONS_00021716-exon-sc0000393-1510915933:269890..270038Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1575043694:269890..270038TCONS_00021716-exon-sc0000393-1575043694:269890..270038Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1491911889:270955..271221TCONS_00021716-exon-sc0000393-1491911889:270955..271221Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1510915933:270955..271221TCONS_00021716-exon-sc0000393-1510915933:270955..271221Clytia hemisphaericaexon
TCONS_00021716-exon-sc0000393-1575043694:270955..271221TCONS_00021716-exon-sc0000393-1575043694:270955..271221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:261706..271221 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.91127	2.58011	4.47035	2.27408	11.8724	7.95335	7.6915	8.44631	9.00928	7.93929	7.84546	7.70186	5.34375	6.36061	6.54614	5.88644	7.72082	8.74114	3.61937	3.48683	5.45147	4.42664	10.2601	8.89405	6.57794	7.23593	2.4154	1.98079	8.03271	8.09241
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029264ARF7EP_C
Blast
[Close]
BLAST of TCONS_00021716 vs. Swiss-Prot (Human)
Match: A14EL (ARL14 effector protein-like OS=Homo sapiens GN=ARL14EPL PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.362e-16
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  280 EEQSEKLKREMQQLVFYNPGPSTQDLLGFKPEFSNREKRKLNRLLEDKNGGSSGDEAPKRSGRKPAKQVITLHDEKGCVRETGEDVCDCMITDCPGCHFPCGKCDSEKCGSVCRNSRRWTYDVV 651
            ++Q ++++R+++ L F NPGP   D   F PE   R+++K  R+ +     S+              +++  +D+ G +     D+CDC+  +C GC +PC KC+S KCG  CR +RRW YD +
Sbjct:   29 QKQLQQIERQLKCLAFRNPGPQVAD---FNPE--TRQQKKKARMSKMNEYFST------------KYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAI 135
The following BLAST results are available for this feature:
BLAST of TCONS_00021716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
A14EL4.362e-1632.26ARL14 effector protein-like OS=Homo sapiens GN=ARL... [more]
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