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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021735 ID=TCONS_00021735|Name=TCONS_00021735|organism=Clytia hemisphaerica|type=transcript|length=1169bp
ACATTATTCGTCGTAGCACTTCCCCGACGCCTATTGGACGCACACCGGGC
ATCTTGTCAAGAGGAATTAATCGAGATGCCATTAATGATTGTAAGGAATC
GTCCATGATTTCATTGGTGCATAGATGACGGATGACTAAGGAGAGAGCGG
TTCTCAGATTTCGTCCTGCTTCTCCAAAGCTTCTAGATGTGAGAATATGG
CGCCAACCATCAGCATCTAGCCCCGAAGGACCCGATCCGCCTTTGGTTAG
CTGGGCTGCTTTGTAGATTAGATTTTCATCAATCACCTCGAAGACAACCG
GTTCTACTTGTAGAAGTGGACCTTGGAGAATAGCGGATTCGTCTGCTGGT
TTCGCACGTGGATGCTTTACTCGAAGCTGTTTGATGGTATTGTCGTCCAA
TGGGAGTACACCTCCGCGCATGTTGTTGGTTAGTAACTTGATTGCTCCAT
TGACGTTGCCTTTTTGCATCATGTCTCGAAACTTTCGTGAGGTAGTGGCG
AGGTCTTTCTTCTTATACGTTGAAGGAAGGCGCTGCTGTATAGTTTCCGC
TTCTCGGAGAAGTTGGTGAAAGTCTCCTTTCTTCCAGATTTTCATTCTTC
TTTCAAGCGCTTGGAGGTGANTTCTTTGCCAGTTGGACTTGGCTTTGTAG
TGACTTCCTTTTTGcctttgcaaaattttaggtgATATTTCCTTCCACCT
TCAGATTTCAATTCTTTGTCGCAATTTCCGCATGGGTATTTCTTATCGAG
TGGTGGGAAAGTTTGCAAGAAGGGTTGCGAGGGAGGTAGTATTTTATCCT
CGGGCAATTGCTCATCTCTTCCCTGTTCTGTTAGATCTCTTGACTTTGGG
TAGAGATTCGAGAACGACTCTCCAGTGCCGATTTTGTTGACTTGCTGTGG
TGGAAACACTATGAACTGTCTGATCGGTGGTCTGCTATCTTTCTGTGGTG
AAGCGATGTTGATGTCATCTTCCCTGCATCCATTAGCCATTTCCTTTACA
CGTAAACAATATCCCTATTTGTCGAAGGATAActgttttaaaaagaaaag
atcaGGAACGAATGCGGTGGTATATCTAAGGTGTATTCTAGACTCTTCAC
TCTGTCGGAGAGACGCGTCTACCTCCTGGCTGCAGAGGATTTTTCTTCTG
GCTATATATTCGAGCCAAT Run BLAST on NCBI protein sequence of TCONS_00021735-protein >TCONS_00021735-protein ID=TCONS_00021735-protein|Name=TCONS_00021735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MKIWKKGDFHQLLREAETIQQRLPSTYKKKDLATTSRKFRDMMQKGNVNG
AIKLLTNNMRGGVLPLDDNTIKQLRVKHPRAKPADESAILQGPLLQVEPV
VFEVIDENLIYKAAQLTKGGSGPSGLDADGWRHILTSRSFGEAGRNLRTA
LSLVIRHLCTNEIMDDSLQSLMASRLIPLDKMPGVRPIGVGEVLRRIM Run BLAST on NCBI transcript from alignment at sc0000393:105518..106686 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021735 ID=TCONS_00021735|Name=TCONS_00021735|organism=Clytia hemisphaerica|type=transcript|length=1169bp|location=Sequence derived from alignment at sc0000393:105518..106686 (Clytia hemisphaerica)
ATTGGCTCGAATATATAGCCAGAAGAAAAATCCTCTGCAGCCAGGAGGTA
GACGCGTCTCTCCGACAGAGTGAAGAGTCTAGAATACACCTTAGATATAC
CACCGCATTCGTTCCtgatcttttctttttaaaacagTTATCCTTCGACA
AATAGGGATATTGTTTACGTGTAAAGGAAATGGCTAATGGATGCAGGGAA
GATGACATCAACATCGCTTCACCACAGAAAGATAGCAGACCACCGATCAG
ACAGTTCATAGTGTTTCCACCACAGCAAGTCAACAAAATCGGCACTGGAG
AGTCGTTCTCGAATCTCTACCCAAAGTCAAGAGATCTAACAGAACAGGGA
AGAGATGAGCAATTGCCCGAGGATAAAATACTACCTCCCTCGCAACCCTT
CTTGCAAACTTTCCCACCACTCGATAAGAAATACCCATGCGGAAATTGCG
ACAAAGAATTGAAATCTGAAGGTGGAAGGAAATATcacctaaaattttgc
aaaggCAAAAAGGAAGTCACTACAAAGCCAAGTCCAACTGGCAAAGAANT
CACCTCCAAGCGCTTGAAAGAAGAATGAAAATCTGGAAGAAAGGAGACTT
TCACCAACTTCTCCGAGAAGCGGAAACTATACAGCAGCGCCTTCCTTCAA
CGTATAAGAAGAAAGACCTCGCCACTACCTCACGAAAGTTTCGAGACATG
ATGCAAAAAGGCAACGTCAATGGAGCAATCAAGTTACTAACCAACAACAT
GCGCGGAGGTGTACTCCCATTGGACGACAATACCATCAAACAGCTTCGAG
TAAAGCATCCACGTGCGAAACCAGCAGACGAATCCGCTATTCTCCAAGGT
CCACTTCTACAAGTAGAACCGGTTGTCTTCGAGGTGATTGATGAAAATCT
AATCTACAAAGCAGCCCAGCTAACCAAAGGCGGATCGGGTCCTTCGGGGC
TAGATGCTGATGGTTGGCGCCATATTCTCACATCTAGAAGCTTTGGAGAA
GCAGGACGAAATCTGAGAACCGCTCTCTCCTTAGTCATCCGTCATCTATG
CACCAATGAAATCATGGACGATTCCTTACAATCATTAATGGCATCTCGAT
TAATTCCTCTTGACAAGATGCCCGGTGTGCGTCCAATAGGCGTCGGGGAA
GTGCTACGACGAATAATGT Coding sequence (CDS) from alignment at sc0000393:105518..106686 >TCONS_00021735 ID=TCONS_00021735|Name=TCONS_00021735|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000393:105518..106686 (Clytia hemisphaerica)
ATGAAAATCTGGAAGAAAGGAGACTTTCACCAACTTCTCCGAGAAGCGGA
AACTATACAGCAGCGCCTTCCTTCAACGTATAAGAAGAAAGACCTCGCCA
CTACCTCACGAAAGTTTCGAGACATGATGCAAAAAGGCAACGTCAATGGA
GCAATCAAGTTACTAACCAACAACATGCGCGGAGGTGTACTCCCATTGGA
CGACAATACCATCAAACAGCTTCGAGTAAAGCATCCACGTGCGAAACCAG
CAGACGAATCCGCTATTCTCCAAGGTCCACTTCTACAAGTAGAACCGGTT
GTCTTCGAGGTGATTGATGAAAATCTAATCTACAAAGCAGCCCAGCTAAC
CAAAGGCGGATCGGGTCCTTCGGGGCTAGATGCTGATGGTTGGCGCCATA
TTCTCACATCTAGAAGCTTTGGAGAAGCAGGACGAAATCTGAGAACCGCT
CTCTCCTTAGTCATCCGTCATCTATGCACCAATGAAATCATGGACGATTC
CTTACAATCATTAATGGCATCTCGATTAATTCCTCTTGACAAGATGCCCG
GTGTGCGTCCAATAGGCGTCGGGGAAGTGCTACGACGAATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021735-exon-sc0000393-1491911889:105518..106686 | TCONS_00021735-exon-sc0000393-1491911889:105518..106686 | Clytia hemisphaerica | exon |
| TCONS_00021735-exon-sc0000393-1510915933:105518..106686 | TCONS_00021735-exon-sc0000393-1510915933:105518..106686 | Clytia hemisphaerica | exon |
| TCONS_00021735-exon-sc0000393-1575043694:105518..106686 | TCONS_00021735-exon-sc0000393-1575043694:105518..106686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:105518..106686 . |
Blast
The following BLAST results are available for this feature:
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