TCONS_00021737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021737
Unique NameTCONS_00021737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021737 ID=TCONS_00021737|Name=TCONS_00021737|organism=Clytia hemisphaerica|type=transcript|length=650bp
taatcagataatcaaatcctcactgcaaaatattgtgctattctTTCAAT
TACCACTGAATCTTTtagctcgaaaacaatggaattcaaatccccagtca
tTAAAAAATATCTATCCCTATTCCCCATTAGCTGAAAAAATCTCACCGGG
TCTATGAGGAGGGAGTTTAATCATTAAAAAAAGCTTCAAAGGAGACTTGC
CCATCACAAGCATCAAatgtttatgttttaaaatatgaaaaactgAAACA
TGCAATTTTGGATGACACGTCATTACTATGGTAAATGAAAATGAGTAAGT
AGATCGCACTATTCATCATGACCTCACAAGTAGTACATACAATCAACTAG
CATGACATGTTATGAGAACATTATACACATCAACATAGCTAGAGAAAATA
TTTATAACAGTTAGGTTAGGTTAGGAAGATTCTGAAGTACCATGTTATct
tgtaaaataaaatatgCAATTATTGTAAATAAGTTTTCAATAATTGATTG
ATACTGATACATACCTTTTTCAAACTATAAACACAAAAAAACCAAGTTAT
CCAAACTTAATGAAGAAGCATTACCCATAATTAGTGTCTAGCAACAATTA
TCAATTTGTGTGTACGTAATTAGTATTTTAGCGGATGTCGAGTGTCCACT
Run BLAST on NCBI

transcript from alignment at sc0000393:163386..164035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021737 ID=TCONS_00021737|Name=TCONS_00021737|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at sc0000393:163386..164035 (Clytia hemisphaerica)
AGTGGACACTCGACATCCGCTAAAATACTAATTACGTACACACAAATTGA
TAATTGTTGCTAGACACTAATTATGGGTAATGCTTCTTCATTAAGTTTGG
ATAACTTGGTTTTTTTGTGTTTATAGTTTGAAAAAGGTATGTATCAGTAT
CAATCAATTATTGAAAACTTATTTACAATAATTGcatattttattttaca
agATAACATGGTACTTCAGAATCTTCCTAACCTAACCTAACTGTTATAAA
TATTTTCTCTAGCTATGTTGATGTGTATAATGTTCTCATAACATGTCATG
CTAGTTGATTGTATGTACTACTTGTGAGGTCATGATGAATAGTGCGATCT
ACTTACTCATTTTCATTTACCATAGTAATGACGTGTCATCCAAAATTGCA
TGTTTcagtttttcatattttaaaacataaacatTTGATGCTTGTGATGG
GCAAGTCTCCTTTGAAGCTTTTTTTAATGATTAAACTCCCTCCTCATAGA
CCCGGTGAGATTTTTTCAGCTAATGGGGAATAGGGATAGATATTTTTTAa
tgactggggatttgaattccattgttttcgagctaAAAGATTCAGTGGTA
ATTGAAagaatagcacaatattttgcagtgaggatttgattatctgatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012198XLOC_012198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021737-exon-sc0000393-1491911889:163386..164035TCONS_00021737-exon-sc0000393-1491911889:163386..164035Clytia hemisphaericaexon
TCONS_00021737-exon-sc0000393-1510915933:163386..164035TCONS_00021737-exon-sc0000393-1510915933:163386..164035Clytia hemisphaericaexon
TCONS_00021737-exon-sc0000393-1575043694:163386..164035TCONS_00021737-exon-sc0000393-1575043694:163386..164035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:163386..164035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0804484	0.0784499	0.182176	0	0	0	0.103429	0	0.0677923	0	0	0	0	0	0	0	0	0	0	0.0894889	0	0	0.0922405	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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