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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021745 ID=TCONS_00021745|Name=TCONS_00021745|organism=Clytia hemisphaerica|type=transcript|length=617bp
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTggCTAACAAAAA
GATAGAAATGGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatg
tatttcaaaaaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAA
CAGTTGGATGTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGA
TCTTGTCGAACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTG
TTAAACAGGATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGAT
TATATACAAAGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCA
AGGTAAACAGGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAAT
ATCAACAACTGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCag
tttttgaaatctaggtACCTAATTTATAtccttttgtttttgaatacaTT
AAGGTCAAAACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACC
TTTATTGATGATAatttgctttttctttcttgaCATGACATTTGATCAGT
GCTTTGGATATTAAAAT Run BLAST on NCBI transcript from alignment at sc0000394:156475..163638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021745 ID=TCONS_00021745|Name=TCONS_00021745|organism=Clytia hemisphaerica|type=transcript|length=7164bp|location=Sequence derived from alignment at sc0000394:156475..163638+ (Clytia hemisphaerica)
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTGTAGGGATTTGT
TTAAACATCTTTTACTTAATATGAATTCTTTTACATCAGTGTACAAGTAA
GATCCAGTGTCCAGTGAAATGTAAAGAATTTGCTGTTGCCAATAGTTGCA
CTGTGTGAgccttttttacattttacaaactaCAAAAAAGATATATATCA
TGGCCAAGCTATATCCTNTTGGTAGATGTAAAACCAGACCAAAACTCAAC
TCAATAAGTTCTCTGAATATTCATTATTTAATTCATGCATCATCGAGGAA
AACAAGCTACAGAATGTGTAGGGATTTGTTTAAACATCTTTTACTTAATA
TGAATTCTTTTACATCAGTGCACAAGTAAGATCCAGTGTCCAGTGAAATG
TAAAGAATTTGCTGTTGCCAATAGTTGCACTGTGTGAgccttttttacat
tttacaaactaCAAAAAAGATATATATCATGGCCAAGCTATATCCTctaa
atgggctattccatttttaaaccacaGGGGTATTGTCGAATAATCCCAGG
GGGTTGGTTGATTTTTCATAAGGGAATTTTTCTTCATATAaattcagatt
ttccaaggggagGGGGGGTGagaggcgctgtggtatagttaGCCATTCCA
GGCTGAAATTGAAACTATTCcggtggcaatcaaacctagttcatcttgta
gagcttcaaaaaagaaaaaaaatgaggggtcatacacctcctaatgataa
gcggttccggagatattgagattATGGTTACGGTTaaatagcaccttttt
agacatttgaggttgacaatttagcccagaaatggcaCATAAAATGGCAC
CGCAATATgctgcgaaaattgaaaattcaagtttttgtattgagtcaaga
tattccagatatctttattttgactgcagacttttatcaaattctttttg
taatggcttgctaacacttcaaggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaact
gttttaggctaaaaaagggtcaaatttttcagtggtatcactctctataa
ttctagtcctcattttcaggctgaaaatgcttgccaaagtatgaaaagca
aaaaataatacctttaatgaaagaattaatttcagagagtagcaccattg
gatttctcaggtattttctgataaatatggaaagtttcactgtctgGACA
TTAtttcctccgcagcgctttgaaatcaaagatgagttgtgaaatttttt
gtgtcccgcagatctaatttttctaaaaatggccttagTTGAAACGAATT
TTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcctgcatattatatatggttggaaagctaaaagaaagctctaa
attactcaaaaataattaattttatagctcaactacacaaagaacaattg
cttgtcaaagttttacctaaaattgaagattttgataagcgtcaaataaa
aaacaagcaaacccggaatggctagtatagtggtcattgaccttggttgc
tgcacaggcgactgaggttcgatagaccttttttcaaagaggatgtcctg
ttgaataattatgtagtccagccataaaaacaatgatagagccatgaata
attactgtatcatgcatattgtaataattaggcatggttttatcattgtt
tttcagctggactacataattattcaacagggtggcctctttgaaaaaag
gtctattcccactcgcagcggttcacttggccaagtgaatgaacctttgc
CCGGgttaacccatgccatgtgaggagaATCGGGTAGTCAGCCAGTCTGG
AAAGGAGGGAAATGTTATGCCGGAGCTGCGCCAACTTAACTGGGAAAAGT
TGAAGGCAAGCAGATCTCAAACCTCAAATCTACGCCGGAGATATCCGGCG
CACAAGCCGCAATTTCAAGACTGGgtagcctcctgcaactcaaccaaata
gagaaatagaaatagattGCCAGTTTGCACTTCATTAAGATTTGCTGGAG
ATCTCGAGTGCAGCACTCTTGGAAAATCAATCGGATTATCTTACTCAATA
TCTCATTTGCCTTCTCAATATGAAAGAAACTGCtcagctctaaagctcta
acatagcatctaataacatgaaaatcaGAATATGGtttttcaatgggaat
caaaactgtaaagtgcacttacaaacatacATTtttcagatctaacaaaa
ttaataacggcactgtcagtatagacttaaactcatatatcaagattacg
ggatttcgagtacgggccgattttactttcgttttgagtggtttcatttt
cgatttcaacccaacatcttagcaacggggtgctcgcccatagttacagg
cagtcagggaaatcccttaattgcggtataaacgtcacttttacactttt
catataccgcaattgcagtatattcaagaaacagaattNGTAatttttta
ctgcaattgcggtataaacgtcacttttacatttttcatataccgcaatt
gcagtatattcaagaaacagaattcttcaagattcaaggagaaaataggc
aaattttgtacataattgatcatatctttttaatacacgtagacaaaata
ttttttccgtagatcagattcttttgataaagaaaagctTTATTCTCGTA
TGATTttttacagtcgatgtttgtttatctttatcgaccagcactatatg
tagctgttataagcctttgtaggctaacCACAAATGAAAgctactgcaat
tgcagtataccgcaattgagggatttccctgactgacaggtgtttgtgca
aaaaactaaacatagaaaattttccaaatctccCATTTCgataaatgaaa
tgaaaaatgaaacttttctatgtttcacttttttgcacctattcttcaaa
atgaaaatatttaagattttaagttcttgttttattcaatgattttttat
ggcactttgttgacaatctaactctcgcatcaaatttccgctttcttcag
taaattgaagatgagaaaaaacctaagccacggatTACGGATTGAAACGa
atatatgaagggtgagattttacagccgcccctTATgtaaggcactgaaa
ggccacagGTGCCCAAAAGAAGAGCCGTTTGAAATGCAGCAACCTCATTG
ACGTGGAAATTTAGTAAACAGCTACGAAGGAGGTCTGGGAAGCagtcagt
agaagagaccactttcgtttttgttgcagatttctataaaaacttttctc
agggattacttgtcaatgtacatgtacacatgtgttgtgtcaacttgtca
gcatttgTATTGCTGTAAAGGAATAgagaaaagaggtaagactagcctag
tttttaatcctgatataggagtttaagtttagactgactgtcatcattga
caatcaaacaaacgatagtctgtcaagagccttgtaaacattccaacaac
tttcaTCGAAATGATCTGCCACAGCtatgtctaccattttagcgcccggt
ccgaggattgagccttGAATTGAATCTTCAGGTcagtaagtttttatttc
tggtCAGTTTTAACCGATAATCGACCGCTATTTCGATCACTGAAAGTGAT
ATAAAAATTCTAACAAAATGGTTAAGGGGGCTAGGGGGttcattttcatc
atcaatGCAATGATCGAAATAGCTGTCAGTTATCATTTAAGCTTCTTTCA
ACCACTGCAATGATTTTAGGTGCACACTtgtaaaatttaaagtaaataga
tatttcaaaagttaaaatatatttttgtgtgTAGTAAAAAGCCAGACCTT
AGGATCTGTCACTTCTTTTGTTGAACGTCACCCCCTGCGTTTAGTTAATG
AAAGTAGATATGATTTTGAGACATTTTTGAGAAGAGGCTTGTGAATTAGG
CCTGACAAAACTTTTTATGGTCAAGCATATGGGTGATAAATTGAAGAGTA
TGTtcactgtatttctcaaggaaaatgacgtatgttcactgtatttccca
aggaaaataaAGTACTTAcaaatacagagttttcccttacaaatacagag
ttttcccTTACAAATACAGACTTTTCCCTTAcaaatacagagttttccct
tacaaatacagagttttcccttacaaatacagagttttcccTTACAAATA
CAGACTTTTCCCTTATGTtcactgtatttctcaaggaaaatgacgtatgt
tcactgtattttccaaggaaaatgtgAAGCATGTTCActctatttttcaa
agaaaatgaagaatgcACACTCTGTATCTTTCAAGTAAAATTAAGTATGT
TTACTAAACGtagtcgtctaagaaaacagctttttttttttagaatcttc
cttacaatctagtttttctatttataaaaagtagattgctgacgtgtgga
aaggaatttcggcatgactgatccttttgtttcgataataacatcaaagc
gggaattaattttcttctcgattctttctttcctttttctttcttatcag
ttcaGGCTTTCCCTCGCCACTctcaaagcgtggttagctcaagcggttag
atcgTCTGTCTCATATGCATGGGGCTCTGAGTACGATTCCGATGGgtgtc
caatttttcaattcttcaattttcttttttNCGAGTTCGATTCCGATGGg
tgtccaatttttcaattcttcgattttctttttttaattctctttctttt
ataatgaaggtcaattaaacaagtaactagcatatattacctccgctcta
gtgctgcaaataaggaaatttcagttggccggtaattttttgAGTGTAAC
GAGCAGGGGGTCCGGTGGAACCATCTTAGAAAACTTTGTAGTATGTGATG
ACTTAGCTTGGTTAAACACctattttagtttgaaaactgttcctctttta
attagaagcgctatatattaagtatttatctaagcctctaatcttcaaat
tttaaccggacaaaatgaaaaactgagccacagaatgaccggtagaaact
acaaaatgaccggtaattaccggtcacctgccgttatttgcagcactgcg
cTCTCTGTctaaggtttagataagctatAATAGCATCACTTattaataag
aacttttttaagtttttttttcttcaatcatttttttgccacaagcgatt
attcacGGCTAagatatagaagaacgggtATAGGCGTTTGCGTCTGCGTT
TGCTGACTGACAGTTTCACTTTCACTACTTTCACTAGATTCATTTTCAGC
CAGTGAGTGAGCGAGCGATTCTTTGTGAGAGAATCGTCAAATAACTTCTT
TCAGAATCATTGAACTTCTCGTTTTATACTTAAAGGCAGAATAATAATCg
atttccgggtcaaaatgtttggcacctgatccaatcgtttgcttatcttt
cttgcgtggtcgttatttgaatttcagtattcaatgcttataaaatatgG
TTTTTATAAGAGTATTAAACTCCTCACTATgagggaacagatcatagatt
cgatttgaacgcgtaattactaatagcaattaacattacataacgcgtcg
atatctcttcactctAATGATAATGTGATATatacaaaattaaagtgatg
agagaatcacaaaaaaaatcaagaattgaaaaattggacatCCATTGGAA
TCAAACTCGGAGCCCCATGCATATGAGACAGAcgatctaaccgcttgagc
taaccacgctttgagAGTGGTGAGGGAAAGCgtgaactgataagaaagaa
aaaggaaagaaagaattgagaagaaaattaattcccgctttgatgttatt
atcgaaacaaaaggatcagtcatgtcgaaattcctttccacacgtcagca
gtaaggaagattctaaaaaaaagctgttttcttagacgactaCGTTTGAT
GATCTTTCAAAGTCGAATTCAAAGAAAATCTAACagttttgaacttttaa
agatGATTATACTTCTTTGTGCGATTGTACTTGCTGTAATATACTTTTTT
ACTCAGAACTCTTAGAATGTCTGACATCTTCTATGCAACAGCATGAGTCT
GCTTTGTAGATTAATTCATTACCATGATTATTAATTCTAATGTTCCAAAA
TCTTTtcttaacttgaaaaattttcaataggTAAGCAAGTTTCTGCATAT
ATAGCTCACTAATgtttaggaaatatttttttaagggCTAACAAAAAGAT
AGAAATGGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatgtat
ttcaaaaaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAG
TTGGATGTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGATCT
TGTCGAACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTA
AACAGGATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGATTAT
ATACAAAGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGG
TAAACAGGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATC
AACAACTGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCagttt
ttgaaatctaggtACCTAATTTATAtccttttgtttttgaatacaTTAAG
GTCAAAACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACCTTT
ATTGATGATAatttgctttttctttcttgaCATGACATTTGATCAGTGCT
TTGGATATTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021745-exon-sc0000394-1491911889:156475..156512 | TCONS_00021745-exon-sc0000394-1491911889:156475..156512 | Clytia hemisphaerica | exon |
| TCONS_00021745-exon-sc0000394-1510915933:156475..156512 | TCONS_00021745-exon-sc0000394-1510915933:156475..156512 | Clytia hemisphaerica | exon |
| TCONS_00021745-exon-sc0000394-1575043694:156475..156512 | TCONS_00021745-exon-sc0000394-1575043694:156475..156512 | Clytia hemisphaerica | exon |
| TCONS_00021745-exon-sc0000394-1491911889:163060..163638 | TCONS_00021745-exon-sc0000394-1491911889:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021745-exon-sc0000394-1510915933:163060..163638 | TCONS_00021745-exon-sc0000394-1510915933:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021745-exon-sc0000394-1575043694:163060..163638 | TCONS_00021745-exon-sc0000394-1575043694:163060..163638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:156475..163638 + |
Blast
BLAST of TCONS_00021745 vs. Swiss-Prot (Human)
Match: PFD6 (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 8.784e-31 Identity = 54/109 (49.54%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 58 MAAKIQEQLQKEIDVFQKMQKDLQKLVTGRQQLDVQYNENKVVKDELDLVEPDSNVYKLTGPILVKQDLSEAKLNVGKRLDYIQSELKRHEKSITDLQGKQEKKKESLT 384
MA IQ++LQ E++ +Q++QKDL K ++GRQ+L+ Q EN +VK+EL L++ + V+KL GP+LVKQ+L EA+ VGKRLDYI +E+KR+E + DL+ + E+++E+L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLA 109
The following BLAST results are available for this feature:
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