TCONS_00021761 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021761
Unique Name	TCONS_00021761
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3921

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000394:244382..258137+

transcript sequence

>TCONS_00021761 ID=TCONS_00021761|Name=TCONS_00021761|organism=Clytia hemisphaerica|type=transcript|length=3921bp
ATTGGAACTACAGTCCTGTGCAATGTCATTCATTCATTCTCCAGCCTGAA
GATGACGACGACTCCCCTTCAGAAAGTGAATCAAAAGTTCTGACCATTTC
CATGAGAGAGAATACGAAGACTTTTGAGAGATTACTGAGTGAAAACACCA
TCCCAAGGACAGAATCTGAAAAGAGGGACAACAGAAAGAGTAGATTTTTA
ACAAGTGGAAAGAAAGGATATTTACACAAGAAAGGAGGCCAAGATGGAAA
GAAGCCACCACAAAAACGTTGGGTTGAATTTGATGGCATTGAACTGAAAT
ACTTTAAGGAAAAAGGAGATGATCCAAGACAAATCATTCCAGTTTCAAGA
ATGATGGACGTTCAAGCACAACCTGATGCCAAGAAGCCAACATTTCATTT
ATTAACACCCAACAGAAAATTCACATTTTTCGACAACAATGGAGACCTTA
ATGAAACTTCGGTTTGGATGCAATGTCTGATGGAAGCCATTTTGAACAAG
CCTGATGTTCCATGTCTTGTTGGTGGACAGATGTCAGATCCTGATATGGa
gGGCTGGTTATTAAAGCAAGGTCACGGAGTATTGGTGCAAGACTTCAAAA
GAAGATATGTCGCAATCAAAGATGACAAATTATGCTATTACAACTCTTTT
TCACATTTTGAAGAAGATCTTCCAATTTTCAAACTACAAATGAGTTTAGC
AAGTTTAAAAGAGGATGTTTCAAGGAGGCGGCTacttttgagctatcata
cacaAAGAACTTATGTttttgaagtcccacctaaagattCATATGAACAA
TGGAAGGACGCAATTGAAGGGTCCATTGAAAAAGCCCTTGGTGATGACTC
TgttttacaaattttaatgaaagatGAATCAAATTTGCGATGTGCAGACT
GTGGCACCACTAAAAATGTGAATTGGGCTTCAATAAAATGTTTGGTCATC
ATATGTAAAAGGTGTTGCGGGCGTCATAGGGGATATTCTCAAAAATTCTT
CCTACCAAGATCGATTTTGATGGATGTAAAGATATGGACAAACGAATTAA
TCGAAattttcaaacTTATGGGAAACAAAAATGCTAATATGTTATGGGCA
GCCAAACTCCCTCCAGACGAACAAATCTCGCCAGATTGCTCAACGGAGGA
AAGAATTACCTTTCTAAAAGATAAATACATTcacaagaaatatttcaaac
tcTCTGAACATTTTGGATTGGAACATGAGCTAGGAGagGCACTAAGAAAA
GCAGTTGTGACAGAAGATCTTATCCAAACTTTCCGACTGATACAATCTGG
TGCCTCGGTGATGTATATACCAGAAGAATCCGAAGATAAGAGGACTCCAT
ATCAATTGGCGGAAGATGCTGGACAGAGCCTCCAAGTGGCGCTTCTTGAA
ATCTACAAAGGAAATTTATCTATCGAGGAGTGGGAAAAAGAGCAACAAGA
GGAAGCCGCTCGAATCGAGGAACAATTAAGACGGCTTCCACAGATCCAAG
ATGATAACACCGTATATTATGAGAAAGCTGGAGAGCTGATGATGAAAATG
CACGAAAAGGAGAATTGGAGAGATGCCAGGATGTTTCAACTTAAAGAGAA
GATCATTCACCGCAGTATTCGAACGGAAGAAGGGAAGCCGCGAACAGAAG
AAGTCATTGATTTACGTCAAATGGAAGAAATCAAAGCTTTGGATGACCAA
GTCACTTTCTTTTTGCAAACATCCTCAAATCACAGTGCCAGAACGTATTA
CTTTAAAGCATTCACACCTGAAGACTGTCGTAGTTGGTTTACAGCCATCA
AAAATAAACAGGTTTTCGAAGTGGCCCTTGACAAACAAGAAGTTAGTGCA
GATAAAATCCCTTACTTGGTAGACAAGTGCATTAAATACATGGAAACGAA
CGCGTTAACGGATATGAAGACATTGACGCAGGAAGGCATCTATCGCAAAA
ACGGGAGTCAAGCACAGATCAGAGACTTAACGAAACTTTTCAACCAAGAC
GCTGCTAACGTGCGCTTAGATATCAGTGAATACTATGACGTGCATGTCAT
CTGTGGCTTGTTGAAGAAATATCTTCGAGATTTGCCTGAACCTCTTGTCA
CCAACATACTCTATGAAAGCTTCCTGCAAAACACTTACGAAGGTGAAATC
GAACACAATGAGCGTTTGTACCGGTACCGAGATTTGATCAAAGGATTACC
TGCCATCAATCTCCTTTGTTTACGCGCGCTcattcttcatcttcatttaG
TGGTGGAGCTATCATCTTTTAATTTAATGACAATGGAAAATGTCAGTTTG
CTTTTCGGACCAATCATCTGCTCATGTGGAAGAACATTAAACCAGGATAA
ACTGCGATTGGAGTACAAAGTCCTTCAAGATTTATTGACTTACTATAAAT
GGCTTTTTGATgTTGATGAAAACGAAACAAAAAGTCAAGAAGCCATTTTG
AAATTCACAAAAAGTGCTGCTGAAAGCACTGTCACACCAACGATCAACGA
AGGTGGAATGCAGATCACCATCTACTTGAAAAACATCGAAGATCGTATGC
TAGTAGATAGCAGTACCAGACCTTCTGATGTTTGCGCGTTCTTCATCAAA
ACACACGACTTGGATCGAGCTACCAATTGGGCTTTGTTTGAATCCATTAA
TGACGGAACTTTTGAAAGACCACTTAGTTCCAAAGAATCCGTCTATGACT
TGGCTTTGTCTCTCTCTGATAATGGAAAGCTCATCGTCAAAGAGAATTAT
CTGCTGGAGAAACTGGCACCACATCAATCAGCGAGCTTCAACAGTGGAGG
GGTGATACACTTTTTACGTGACAAGTCTAGTTGGAAGAAAGTTTACCTGG
AAATCAAGCAAGGAATGCTTCGAGTTGCTTCCTCCAAAGACTCCAGTAAA
GACATCGATAAATTTGGTATTGTAGATGCACAAGTGCTCCTTTACAGTGG
CATTGACCCCAAGAAGAAAGGACCGGCTAATAATAAATTCGGGTTCATGA
TCAAGGTCAATGGTTCCATTAGCAATACTCAACCAAGGTACTTTTGTTCG
GACCAAGAAGAAATCATCAACATGTTCATGGCAGTCATCCTCAATTTGAG
GTATCCAGTTGGTATTTGGACTGATCGATGCTCCAAAGATTTCAGAGAAA
CCGAGGCTGAAAGTAATCGCAACTCGCAGTTCTGGGGTCGTCAGTCGATG
GTGATTCAGCAAGAAGGAGCAGCACACAGATTTACTGAACAACTACAAAG
CAAAAGAAGTACTCTCAGAAGACTTTTCAGAACTTGACCCTTCTTCATCc
taatgaaaaatttactttAGGGGTTTGAAATAAAGAGGTGTAAAATTGGG
AGGCTCTACATAATCCTCtttgatggaaaaatggaaCGCTGATGAATTCG
TGGCTCACAACCCGCCGATGTACGCATCCTTTCCTAAAATCTATATCGAT
TATATTTTGAGGGGCTGTTAGATAACGGAATGACTGTAATTAGTTTAATT
TTATTAGAACGggaccaaaattaaaattcaaccaaatttttgtaaacagt
ttttatatttttttcaaatggcagaattttttcaCGAATTTATACAAATA
TTTTTCTattaagaattttttgtttatacatTATTTACATGGGATAGATA
TAAAAACGCTTGTAGAATTCGATGCTCTCGTCTCGCTTAATACTTTATAC
TCGAAATTACTTTGGTTTAAATCAGCATGACAAATTTAAGATTATTCGAT
TTTTTGATCACTTAACTTTTCTAGTTTCTAGATGTTTATGTATGTAATGA
GTTTCTTTATATGATTGTACAAATTTTTGTATTATTGTTTTGAATGCAgt
tttttgataataattttcttttgtttattttaaataTCATTTACAAAGGT
TTATAATTAATTAGAAGTTTT

Run BLAST on NCBI

transcript from alignment at sc0000394:244382..258137+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021761 ID=TCONS_00021761|Name=TCONS_00021761|organism=Clytia hemisphaerica|type=transcript|length=13756bp|location=Sequence derived from alignment at sc0000394:244382..258137+ (Clytia hemisphaerica)
ATTGGAACTACAGTCCTGTGCAATGTCATTCATTCATTCTCCAGGTAGAC
TATTGTCCTTTTATTCAAGTTTTCATGTATTAAAATAAATGTGCATTAAT
TAACAAAttcttaatttcatttttctcttttcactTTAGCCTGAAGATGA
CGACGACTCCCCTTCAGAAAGTGAATCAAAAGTTCTGACCATTTCCATGA
GAGAGTATGTGTTACTACCTTTACTGTTAATCAGAATGATGtttggtatt
ttatgaaaagaaCCAGCAGTTCTATTTAAATAAACCTTATAAAATAATTC
ATTGTTAATAATAATATTGGATTCTTTATTTCTGTTTAGGAATACGAAGA
CTTTTGAGAGATTACTGAGTGAAAACACCATCCCAAGGACAGAAGTAAGT
GACATAAGCAACCTTCTGTTTTGAGATTAAATAGCTATCGATGATTATAA
AGTCTTTCTTTATATAATTGACAGTAGTAGCAAAAAaggttgtaactttt
gataactAAATTGAATTTATGAAATCTTCTTTGCTTGTTCAAGATAAACA
CtatatcaaaatataaattcggcctgaaaatttaagaaaatttgtGACTA
ATTTTGTGATGGAAAAAGGTTTTTAATTGTTTACACTGAAGCTTTAgagc
tttcattttcatgttagTGCTAGCCTCACCTTCACCAATTAAAGTTGaca
attatcaatttttttctgtacgtttattagacacttcaaaatagctgttt
ctccTTGCAAAAAATCTTCAAGACTTTCTGgtcagttttttgaagattgt
tgAAATTTGGCTCATGTTATCTGATAAGGAACTCATGAGAGTTAAATGCC
ATTTGATGTAAAGTAATTTGAATTAATACTTTGAGAAGTGGATTTGTTCT
TTCAATgtatttattgtatttttctattctttttctATAGTCTGAAAAGA
GGGACAACAGAAAGAGTAGATTTGTATGTATTCAGTATGGAATGATTTTG
CAACAAAAAGTTAATCGTTTCCCCTGCATGCTTTTAATCTCTGCTTGGTT
GTGCTACCACtttgataaaatatttcttccatACCTGAAGTCCTGAAGTT
CCCCTGTCAGGATATTCATTAGCCACAATTATATGATACTGCTGAAAATA
GCACAGcgatgaatctgaaaattgccaCAAAACtgcataaatattttttt
gtattacttTCAATCCTATCCTCCTTTTAGTCGATTGCAGTTGcacatta
aaaacatcaaaaagtaACTGTGAACTCTGTGAAATGATTATGACGTATGC
AACAGGGAGTGCTATTCTGGAAAAACCATAGTGTGAAGAGGGGTGTTGAA
TTGTCTGCCTGATTAAgtttccgccaaatttaacttttcaagttgacagg
caaaaaaaaattttgtcgaaTTTAAATTATTGTATTCATTCCCCTAGTTT
GTACTTTCTCAGGCCTTGAACCAggtgatttcttttttattagcGATTTT
CATCATccaacaaattaaattcccagcaaatttgatttttcaagccatct
gccaaattaaatttcctctgaaaaaactttttcagcaaTCGGCCAAATTA
AAATCCCACctaaatttctttccttaaggtACAGTGCAATATCCCTGTTT
GATAGGGTAAGCAGGATGCCTAGAAAAAGCCTTAATAGATTTTCTTACAT
TGGATTAAAATATAAATCATTCTTATCTATTCTTATCTATTCTTATCTAG
TTAACAAGTGGAAAGAAAGGATATTTACACAAGAAAGGAGGGTAAGCTTT
TTGTTGAATTAACACCTGTACGTATGTTGCCTTACTGAGTATTTCCTAAT
GAGAAACAGTGAGGTTTACTCTCTGGATTTTGGATAACATCTTTATCAAA
AGGAATGATTTTGGCAAGAACTAAATTTGATAAGCAAAAATCTTTTGACT
TATTTGGAGAGtaattttcgccaaaattgagTCTCActgaatttaatttt
taagataatATTTAAGTTTCTTAAACTTCATATTTCGTGTAAGATTATTA
CCATTTTAAATCCAGCCAAGATGGAAAGAAGCCACCACAAAAACGTTGGG
TTGAATTTGATGGCATTGAACTGAAATACTTTAAGGTTTGTTGTATTATC
TCTTTTTTACCTTTCTACCTGTTTGTTATCATTAAACTCTGTTTAACCCT
GAAGGTAATGAAGATGGATAAAAGTTGGCGCTTTTTATTCTATTCTGATT
GATCATTTGAAGCAAACGGCTGTTTGGTTACTATAGGAATAAGGTGATTA
ATTTTTTTCGTGTATTCGTGGAAATATTTAAGGTGATGGAATCTGAATGA
AAAAACATTACATTTTTGACAAGTATGTTTAAAGATAATAGCTTTGTTAT
GAGAAATTAAGAAAAGATTGCTAAATAAACTCAATACCCCAAAATTCTCG
AGGCCACTGCCTGTAAAGTCATTGAtagattttaaaaacatattaCGATT
AAGTAATTCCCATTTTGTATGAAGTTGAAACCCTTTCCCTTTTAGATGTG
AAAATTTCCATGGAAAAAACTCTTAAAGAAAATGCGATAAAACTCTGAAA
ACTCTCAAAATGTTGTTTCAAAAATGcatccttatgaaattaatttaTTA
TCAATCGAAACTATTTTGAATCACATTTAACatgaatttttggcaaaatt
aagtttttcaaaatcaggggatctctttctgttcttataaagttatgacc
atttaggtcattactGAGATTTTTTCTCTTCATCTATATTTATCACCTTC
ATGGTTAATAGATCAGTATGGGATtcataattttgtaatttttattaCAC
CCATAAAAatctgtttcccttttttgtcttgtTGTCACTAAACTTGAGAT
TTCTTTTACAGGAAAAAGGAGATGATCCAAGACAAATCATTCCAGTTTCA
AGAATGATGGACGTTCAAGCACAACCTGATGTAAGATATTAATCTTCAAA
TCAATCTGGTaataaaaagtttataaaataaGTAGCCTCCCTCCATATTC
TTTGTTAGctcttttaagaaaatttgaaataattgaAGATTTATTGACCT
ATTTTGACAATTTGTATCTCTATCTTTTTTTCAGGCCAAGAAGCCAACAT
TTCATTTATTAACACCCAACAGAAAATTCACATTTTTCGACAACAATGGA
GACCTTAGTAAGTACAGTTGACTTAATGGataaattcattgaaatcaatA
GAATTCAATTGAgagctttttcaaaatattttaattattgtGTTGTGACA
AATACAAGTACATTCTTTTTAGATGAAACTTCGGTTTGGATGCAATGTCT
GATGGAAGCCATTTTGAACAAGCCTGATGTAAGTTGGAATTTTTTCCACC
CATATCATTGTAACTACATCCCAACTtgattgaaagattttcaaaaattt
atttggtaTTTCTAGGTTCCATGTCTTGTTGGTGGACAGATGTCAGATCC
TGATATGGaggtaaaaaaaactaaaaccttTTGATCAATTTTAGTTTTAT
ATTAGAACACATTTTTTGTTAAGTCTTTATTTTGCCAGTAACTCATATTC
AGTCTCAAAGCATGTTTTACAAACTGACTCTTTGTTTGTTTTACAGGGCT
GGTTATTAAAGCAAGGTCACGGAGTATTGGTGCAAGACTTCAAAAGAAGG
TAAAATTCTATTTCTTTATCTTAGTATTTGTATTATactcgaaaaattgt
aaaattcatttttgttcTCCTATTTTTCCCAGATATGTCGCAATCAAAGA
TGACAAATTATGCTATTACAACTCTTTTTCAGTAAGTTCAGCTTTTCTCA
TCTTGTCACTGTTTAGAAATTTTGTCATAATGTATTCAATGAGaagaagt
tttatttatttttaccattttcatgatTTCAGCATTTTGAAGAAGATCTT
CCAATTTTCAAACTACAAATGAGTTTAGCAAGTTTAAAAGAGGATGTTTC
AAGGAGGCGGCTacttttgagctatcatacacaAAGAACTTATGTGTAAG
TGTGTAAGAGTATCAATGAAATTCCTAAGCACCGATTATCTTACTTTTAA
AATCATGCATTTTTCAAACCTTAATGAGACTGGTTATGCTGTGTCTTGCA
AGGAAAGTGGTTTTTAAGATGAGGAAGCTGTATTATAAACAACGTGTTGa
ttcttttcttattttcagttttgaagtcccacctaaagattCATATGAAC
AATGGAAGGACGCAATTGAAGGGTCCATTGAAAAAGCCCTTGGTGATGAC
TCTGTGAGTATTCGTTTCAATAAAGTTGCTCAATGCACCTTCATCAGCCC
TATTTTGTTTTATCTTGCTTTACAACAGATACTTTATATGATGCTTgaca
aaataaccaaaatataATGGATGCCCTCTTAGGAAATTTTGCAGCGATTG
AAAAATTCCAGATGACAAACCGGGTGCGCCAGGGTGCGTCAAAAATAAGT
CATCGTTCACATGAcaaaaggttcaatctcaaaataagtgtccttggtaa
atttaaaattttgcacttttcttttttttgaggTTTGTCGAATGAAAACA
TTGATTATTCCTCTGTTTAAAAAATGCCTAATCTCAATATCAAAGATAAA
TATATTGATTTTGAAAGGCACTAAATGTGGCGCAGACAGAAAGAAAAAGT
GGACAGAATGGGAATTCTCTGGAGAATTCAAGCTAAGAAGATATGGTACA
TTGTTGGCCCAGCTATCTTTAGCGTATCGGGCCTTTAATTAGCTTTCTGC
CCGGTGTCAAGTGTTACAATTTATtaggcgatacgcgttttcaaacacag
gctagtacatattgtgaaaaatttgattggctgaaaCATGTCTCTTTAGA
ACATGATTGACAGAATAAAAATCGTctttattggttaaaaacataaaagg
agaaaataaaattaactaCTAAAACTATTAGAATATAACAGATGTAGTAC
GTTTTAGGAAAAACATTGTGATTTACACAGAAATAACCATAACAAATCTT
CTtttaggaagatgttcttttaaaaaagttgttttttacatttctctatc
atgtgaacagttcagttgttcacgtgttaggaACAAAACATCTCTGTATA
TAACATTAAATATTTTGGATTATATCTCATTGATGCAAAAGCCGAGTGGT
CTAAAGCGTCTATGGCGTCTATGGCCTGTACTAGTGACTCCAGGTTCAAA
CCCCCTCTGTTActcaagtcttgttcagttcatatttttattcgctgggc
cttcatgccctctgggcttcttgtttaGGATTATATCCAAGCAACCTAGa
ttattctgttttttttaggttttacaaattttaatgaaagatGAATCAAA
TTTGCGATGTGCAGACTGTGGCACCACTAAAAGTAAGATATATTTCTTTG
GCTGTTGTTATTTATTTAGTTACAAATAGATATGTATATAGATATGTCGG
GTATCTTTCAAATaaaggttgaaaaatgaaagaagtttttttgatttcgt
tttaatatttccaaatgGTATATTGAACATTTTGATACTTGTTTTTTNTT
TTAATGAAAGATGAATCAAATTTGCGATGTGCAGACTGTGGCACCACTAA
AAGTAAGATATATTTCTTTGGCTGTTGTTATTTATTTAGTTACAAATAGA
TATGTATATAGATATGTCGGGTATCTTTCAAATaaaggttgaaaaatgaa
agaagtttttttgatttcgttttaatatttccaaatgGTATATTGAACAT
TTTGATACTCGTTTTTTATTAGATGTGAATTGGGCTTCAATAAAATGTTT
GGTCATCATATGTAAAAGGTGTTGCGGTAAGAAGACATCTTCATTCTACA
TACAAGGAACAACAAGGAACTGATGAAGTTAGAATAGagcaccgcgctga
atctagaaataaattttatttttgacataattattACTCTCTGTATGTTT
ggacgagttccaatcccatcaacctttgcgttaatctcttttgcacgtta
attgcatcatttgacaaaagatatataacaacttgcatgtatctttaatt
gagccgcattgaattgtgggattgtaactcgtacaaatttcaaaaaaagt
gaaaagtaataattatgacgtatgcgttgcggagcgctataGAGAGACAA
CGCACACTTGTTTTTTTACAGGGCGTCATAGGGGATATTCTCAAAAATTC
TTCCTACCAAGATCGATTTTGATGGATGTAAAGATATGGACAAACGAATT
AATCGAAGTAGGTGTTTAAAATTCACACATTTTAGGAGTTGTATATAAGG
TATTATTAGAACTAGTATTAATCAAGGTTTTTCTGACTTGAGGCAGTAAA
CATGCATTTGGTTTAATTCGTTAGCTCGAAAATAAATTCATtcatttcaa
aggaaaatcttCTATAAGTGACAGAGATGTGACATGGGATTTCTTACTAC
TGTCATttcattcaatgtaaaaaagaaGGAATACAATAAAGcatcttttt
tgattttcagattttcaaacTTATGGGAAACAAAAATGCTAATATGTTAT
GGGCAGCCAAACTCCCTCCAGACGAACAAATCTCGCCAGATTGCTCAACG
TAAGTATCATGGCAAGTATGAAGTGAATGCTTTTTCAACCTTTCCATTGC
TTATAGAAATATCACTGTTGTATACaacttttttgtaagaactgcTTAAT
GATTCATTACATAATTTCTATTTGACAGGGAGGAAAGAATTACCTTTCTA
AAAGATAAATACATTcacaagaaatatttcaaactcTCTGAACATTTTGG
ATTGGAACATGAGCTAGGAGaggtatttaatttttgagagaAACTCTTTA
TTTTTGCAATAAACGTGATTTTGAAAGCAACTTAAGCGATTTATGTATGG
GCAATTTTGTTATAAACGATCGAGGTTAATTTAGTTGATTTATTGGACAA
TATTCATTGGTTTACTTGAACTTGCTCGTAAGTGCCACAACTCCTCTCTT
CTTTTTAAGGCACTAAGAAAAGCAGTTGTGACAGAAGATCTTATCCAAAC
TTTCCGACTGATACAATCTGGTGCCTCGGTATGTTCTTTTgtatttgtac
tagtaatcgtatggtttggagtgcaattaacgattaatcacgagtaacaa
aggagaaaatagtaatttgcacgagtccgaaggacgagtgcaaattacgg
tattttctcctttgtacgagtgattaatcgttaattgcacgacaaaacat
gaTTCCGAgctaatcgtcagtaaataatcattagtaaatcatagtttttt
ttagccgaagagtgcaaaaagtggtaatagtgcaattaacgattaatcgc
acttctctaaaccaatcagattcgagtaattttgcacggctgacgattag
tTTTGAGAATGATCAAACCAGAGCAAACTTGTATTTATACATagcaattt
tttaagaaaaagtgaacTTGTTAAAGAATAATATTAAGCTGTTCTATTTA
ACATCCActcaggggggtggacgaaccttttcaagccaaaaataattctt
gagaatgTGTGAATACCACttggaaaatagcaaaatttgtcaaagaaaaa
tCTTCTTCATACCATTAAATAAGgttggacgaactaaaatcagtttttta
cccCCGGGAGTTTTAGAATAacattttaccccctggaaaattaaaaagat
tcttttagacctctggaaatttttctttgcattaccccctggaaatgttt
gtcCAAACCCTACCTGTATGGAGATGGCCAATTacgtttttatattttca
atgaaGATGTCGGGTATTATAAGTTTTTAAATTAAACActctccaaattt
gagtcaataGATAATTTTAATACTACTTTGTGCAATTATTTGATAGGTGA
TGTATATACCAGAAGAATCCGAAGATAAGAGGACTCGTatgtattttcat
tgttcttCGTCCATCAAAAGATGTTTGCCGATTTCTATCAATCCCCACAT
TAATGCTGGTCAGTTTCTTAAcaatttcttttccttttcagCATATCAAT
TGGCGGAAGATGCTGGACAGAGCCTCCAAGTGGTAAGAAAAGACTTTACA
CTCAGACAAGCGACTCACTTCATGTTGAACTTGAAACGTCTTCAATcggt
gaaatagaaactcactGCAAaccttttgtaatttttctattttttttatt
gtataattTTATCTGTTTTCAGGCGCTTCTTGAAATCTACAAAGGAAATT
TATGTAAGTATGCTCTCTCGATGTTATTCATACTTTTCAGAGACTCATTT
TTTATACATTTGGATTTCAAATAACCTCTCGACACTTTATGAAGATTACA
ACACGACTATTTCTCTCTTTTTACAGCTATCGAGGAGTGGGAAAAAGAGC
AACAAGAGGAAGCCGCTCGAATCGAGGTTTGTGAAATATCTTGAGCCTTT
CTTTAGATATTACTTGTAACAAGAGTGACATGTTCTGATGGAATTTGCAT
TTTGTTTTCAGGAACAATTAAGACGGCTTCCACAGATCCAAGATGATAAC
ACCGTATATTATGAGAAAGCTGGAGAGCTGATGATGAAAATGCACGAAAA
GGAGAATGTACGTACTCGGCTTTTCATTTTCTTACTCGTTAGAACTTGGA
AGCGGTTATCATTCCTTTTCTTTCGATAATTCATACTGATGTCCCATGAA
TTTTACTTCTcaaagaagaaatattttttatggaTGACTATATAACCTTG
AATTCTAAAAATCACATTTCAGTGGAGAGATGCCAGGATGTTTCAACTTA
AAGAGAAGATCATTCACCGCAGTATTGTAAGTTTTCTTCAAGCTTCTAtc
gtttttttgaaatctatacAGTGACCCGTGCAATCCGAATAATTAACCAT
TCGAATTGTTTACTTCAGCGAACGGAAGAAGGGAAGCCGCGAACAGAAGA
AGTCATTGATTTACGTCAAATGGAAGAAATCAAAGCTTTGGATGACCAAG
TCACTTTCTTTTTGCAAACATCCTCAAATCACAGTGCCAGGTAAGTTCCT
TAAGCAACGTTTAGTTTGGAATTCAGCAGCACTTTTCATCACCTTGCCAC
TACAACTTGAATTTGTTCTCTTTTAGAACGTATTACTTTAAAGCATTCAC
ACCTGAAGACTGTCGTAGTTGGTTTACAGCCATCAAAAATAAACAGGTAG
ATACAATTTAACCAGCCCATTCTGCAAAAGTAGGTTTAATGCTTTTTCGC
CATCAATTTCTTTCTTAAGGATTTGATTGTTCTCCTTTCTGTACATTTTC
ACTGTATCTCTTGCAGGTTTTCGAAGTGGCCCTTGACAAACAAGAAGTTA
GTGCAGATAAAATCCCTTACTTGGTAGACAAGTGCATTAAATACATGGAA
ACGAACGGTATGTATTCCTCATTCACCCCTTCTATGTTCTTCTCTCAATT
CTTGCAAATACCTCACCTTGTACGTTCTCCCTTTTTGTTTCAGCGTTAAC
GGATATGAAGACATTGACGCAGGAAGGCATCTATCGCAAAAACGGGAGTC
AAGCACAGATCAGAGACTTAACGAAACTTTTCAACCAAGGTACTTTGCAA
GAGTCATTAATCTTAACCACCATTGTATGAAGCTAAATTCTTGTTTATTC
AGTCCTTTCAGTCGTCTTTCAATTGAAAATTGACAATGAGAAATGTGCAA
CTTATTACTGTATATGTTTTCATTTCAGACGCTGCTAACGTGCGCTTAGA
TATCAGTGAATACTATGACGTGCATGTCATCTGTGGCTTGTTGAAGAAAT
ATCTTCGAGATTTGCCTGAACCTCTTGTCACCAACATACTCTATGAAAGC
TTCCTGCAAAACACTTGTAAGTTTTTCCTCGAACATTTTGATCATCTCAA
AGTTGTAACAGTAGAAAAAGAGCTAATAATATAAATGTTCTCTCCTCTTC
CCTTATTCTCGTTTAGACGAAGGTGAAATCGAACACAATGAGCGTTTGTA
CCGGTACCGAGATTTGATCAAAGGATTACCTGCCATCAATCTCCTTTGTT
TACGCGCGCTcattcttcatcttcatttgtAAGTGATGCCTGTTGTTTTT
CTTCGCACTACAAACTAAAGTTTGAGAAGAATCTTTTTGTCAAAACTTTT
GAGTGGTCTGAAGACGTTATTGGATATCGATTGGTTGCTTTGTAATGTTA
ATATTATTTTTGGGACCTGCCCTTTAACTCGCCAATGGTATCTTTCTTac
tttgtaattattttttttgtagaGTGGTGGAGCTATCATCTTTTAATTTA
ATGACAATGGAAAATGTCAGTTTGCTTTTCGGACCAATCATCTGCTCATG
TGTAAGTTGTGCTTGATAGAAGTGTTCTTCTGTTCTTCGATTGATCTATT
CATGAGAACCTGTTAATGAtgtttctttctctttttcatAATAGGGAAGA
ACATTAAACCAGGATAAACTGCGATTGGAGTACAAAGTCCTTCAAGATTT
ATTGACTTACTATAAATGGCTTTTTGATGTGagtacttgtttttttattg
tgAAGCCCTCCTGTAACCCCCATTTTGTCAATTAAATATATTATTATACT
TCATATTTTGGTCATGGAATGATAGTCaggaaaaaaagacacttttttta
ttctgctactggcagtttcatgtcACTTTGGTGACAATCTTCAAGCAATG
ATTTAAAATTTAAGGATATAATTTGGATATAATCTTTCAACGAGCTATTG
ACTAGCCAAAAACTCTTCTTGTTCCGGAGATAACGGATTAAAGTTTTAAC
TTGTCAATTTTCTggaaagaaaactttaaaaaggcCTTGGTACTTAGAGG
GTGAATGAGAGAATTAGGTCACAAATTATCACCNGAAAAGACCTTGGTAC
TTAGAGGGTGAATGAGAGAATTAGGTCACAAATTTTCACCACGACACCAA
cattctttctttatttttcataggTTGATGAAAACGAAACAAAAAGTCAA
GAAGTAAGTCAACAtttataactttttatcttgaactaattttaagtaaa
aacttACCTGATTATGTGATATTAAAATACTTTTCTGTTTCTTCTCCAGG
CCATTTTGAAATTCACAAAAAGTGCTGCTGAAAGCACTGTCACACCAACG
GTAagtctctttttttttgctcgaaatcgaagttttttctgtttttgccg
TCATTCTTCGTACACGAAGTGAAATTTCTTACCTCCCATCCTTGATAGAT
CAACGAAGGTGGAATGCAGATCACCATCTACTTGAAAAACATCGAAGATC
GTATGCTAGTAGATAGCAGTACCAGACCTTCTGATGTTTGCGCGTTCTTC
ATCAAAACACACGACTTGGATCGAGCTACCAATTGGGCTTTGTTTGAATC
CATTAATGACGGAACTTTTGAAAGACCACTTAGTTCCAAAGAATCCGTCT
ATGACTTGGCTTTGTCTCTCTCTGATAATGGAAAGCTCATCGTCAAAGAG
AATTATCTGCTGGAGAAACTGGCACCACATGTAAGTTATTGACCCTTGTG
ACATTTTGAAGAATACCCACGTTGTGAATCTTGCTCGTACTTTACAtatg
aagtttgcaaaaaattaatcataaggtgttttctttttgctttacAGCAA
TCAGCGAGCTTCAACAGTGGAGGGGTGATACACTTTTTACGTGACAAGTC
TAGTTGGAAGAAAGTTTACCTGGAAATCAAGCAAGGAATGCTTCGAGTTG
CTTCCTCCAAAGACTCCAGTAAAGACATCGATAAATTTGGTATTGTAGAT
GCACAAGTGCTCCTTTACAGTGGCATTGACCCCAAGAAGAAAGGACCGGC
TAATAATAAGTATGCCGCCTTGAAACCTTGTTTATATACCGTGTTTCGTC
TTTTCAGCACAGCCTTCTTCtgaagaaatcttgaaaatttgaagagtTCC
GCCACGAGActattttgaggatttttttctcggttttttattctatttca
aggttctttaatttttctgattttgaagaagatgtatgcttttttttcat
ttcgtaGATTCGGGTTCATGATCAAGGTCAATGGTTCCATTAGCAATACT
CAACCAAGGTATGGTCTCTTTTTTCAGAACAAAAagcttttcttctttct
ttcaacTTTCAACGATGAATGATATGAGTTTTGATGACTTGATTACTTTC
TACTGAAGACATATTTTGTTGATTGCAGGTACTTTTGTTCGGACCAAGAA
GAAATCATCAACATGTTCATGGCAGTCATCCTCAATTTGAGGGTAGGTAT
CATCCCTTacttattggacctacctggaggttcTATGAATAAACCCCTGC
TCGTTCGTTCTAGTTAccagctttcctcatgattgattcattgaattttt
ctgatcttttgcaCCAAGATGTAAAGAATTCCAGTTTTCGAAACATCAtt
ctcgttagttttttctaatttcttgtttattttaaattcaatgttTTCTG
TTGATTAGCCGGGTAATTacatcaaagtatcacttgtatTTCACTGTCTT
TACATTCTTTacactttgaaatctttgtgTATGTAATTGTTATTGTTTGT
TATGCTTTCAGTATCCAGTTGGTATTTGGACTGATCGATGCTCCAAAGAT
TTCAGAGAAACCGAGGTGAGATTGCGTTCATCCAGTATATTCAGATGGTT
TTGTGAATGCTAATTTAGAAGAAGCAGGGCTGCTTGCACATTTTCGAGAC
TAATTAATCTTTTCTTCTGTTTAGTCCATTATCAATGAAATATTAACCAA
CTTCTTTTCGCTTTCTTTAGGCTGAAAGTAATCGCAACTCGCAGTTCTGG
GGTCGTCAGGTATTTATTAAGCTTTATCCAATATCAAGAgcatttttata
tatttaataCATTCAAATGAACATAGTTTTTACTTGGTGAAAGAACGAAA
GTTTTGACCTATCATTTTATCGCTTTCAGTCGATGGTGATTCAGCAAGAA
GGAGCAGCACACAGATTTACTGAACAACTACAAAGCAAAAGAAGTACTCT
CAGAAGACTTTTCAGAACTTGACCCTTCTTCATCctaatgaaaaatttac
tttAGGGGTTTGAAATAAAGAGGTGTAAAATTGGGAGGCTCTACATAATC
CTCtttgatggaaaaatggaaCGCTGATGAATTCGTGGCTCACAACCCGC
CGATGTACGCATCCTTTCCTAAAATCTATATCGATTATATTTTGAGGGGC
TGTTAGATAACGGAATGACTGTAATTAGTTTAATTTTATTAGAACGggac
caaaattaaaattcaaccaaatttttgtaaacagtttttatatttttttc
aaatggcagaattttttcaCGAATTTATACAAATATTTTTCTattaagaa
ttttttgtttatacatTATTTACATGGGATAGATATAAAAACGCTTGTAG
AATTCGATGCTCTCGTCTCGCTTAATACTTTATACTCGAAATTACTTTGG
TTTAAATCAGCATGACAAATTTAAGATTATTCGATTTTTTGATCACTTAA
CTTTTCTAGTTTCTAGATGTTTATGTATGTAATGAGTTTCTTTATATGAT
TGTACAAATTTTTGTATTATTGTTTTGAATGCAgttttttgataataatt
ttcttttgtttattttaaataTCATTTACAAAGGTTTATAATTAATTAGA
AGTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012211	XLOC_012211	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000394	supercontig	sc0000394:244382..258137 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395877	0.732707	0.0148483	0.0141607	7.4825	5.75472	5.87373	5.52609	2.06211	4.81134e-08	1.72097	1.01408	9.96301	3.39001	0.673972	0.28643	0.17042	0.000795911	11.7349	13.0043	0.965241	1.43893	1.72241	2.72549	2.08643	4.80808	30.8111	27.0079	1.42884	0.836221

Blast

[Close]

BLAST of TCONS_00021761 vs. Swiss-Prot (Human)
Match: ARAP1 (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 1.030e-49
Identity = 138/385 (35.84%), Postives = 192/385 (49.87%), Query Frame = 3

Query:  267 RWVEFDGIELKYFKEKGDD-PRQIIPVSRMMDVQAQPDAKKPTFHLLTPNRKFTFFDNNGDLNETSVWMQCLMEAILN-----KPDVPCLVGGQMSD-PDMEGWLLKQGHGVLVQDFKRR-YVAIKDDKLCYYNSFSHFEEDLPIFKLQMSLASLKEDVSRRRLLLSYHTQRTYVFEVPPKDSYEQWKDAIEGSIEKALGDDSVLQILMKDESNLRCADCGTTKNVNWASIKCLVIICKRCCGRHRGYSQKFFLPRSILMDVKIWTNELIEIFKLMGNKNANMLWAAKLPPDEQISPDCSTEERITFLKDKYIHKKYFKLSEHFGLEHELGEALRKAVVTEDLIQTFRLIQSGASVMYIPEESEDKRTPYQLAEDAGQSLQVALL 1397
            RWV  D   L+YF    D   ++ I V+ +  V A  D K   F ++T NR F F   + D+ E   WMQ L +A+       +     L+G   S+ PD  G L  +G       FK + YVA+  DK+  Y +   +   + I  + MS+ ++KE V RR   L+    R + F    +   EQW +A++G+I +AL    V + +     N  CADCG  +  +WASI   V+ICKRC G HRG        RS+ MD K+WT  LIE+F  +GN   N  WAA +PP E + P  S   R   L+ KY   KY +    FG + EL +AL  AV T DL +T  L+  GA +     + E   TP  LAE AGQ+LQ+  L
Sbjct:  348 RWVRLDTDHLRYFDSNKDAYSKRFISVACISHVAAIGDQK---FEVITNNRTFAFRAES-DV-ERKEWMQALQQAMAEQRARARLSSAYLLGVPGSEQPDRAGSLELRG-------FKNKLYVAVVGDKVQLYKNLEEYHLGIGITFIDMSVGNVKE-VDRRSFDLTT-PYRIFSFSADSELEKEQWLEAMQGAIAEALSTSEVAERIWAAAPNRFCADCGAPQP-DWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTETLIELFLQLGNGAGNRFWAANVPPSEALQPSSSPSTRRCHLEAKYREGKYRRYHPLFGNQEELDKALCAAVTTTDLAETQALLGCGAGINCFSGDPEAP-TPLALAEQAGQTLQMEFL 716

HSP 2 Score: 115.161 bits (287), Expect = 1.569e-25
Identity = 140/538 (26.02%), Postives = 236/538 (43.87%), Query Frame = 3

Query: 1647 EEVIDLRQMEEIKALDD---QVTFFLQTSSNHSARTYYFKAFTPEDCRSWFTAI-KNKQVFEVALDKQEVSADKIPYLVDKCIKYMETNALTDMKTLTQEGIYRKNGSQAQIRDLTKLFNQDAANVRLDISEYYDVHVICGLLKKYLRDLPEPLVTNILYESFLQNTYEGEIEHNERLYRYRDLIKGLPXXXXXXXXXXXXXXXXVVELSSFNLMTMENVSLLFGPIICSCGRTLNQDKLRLEYK---VLQDLLTYYKWLFDVDENETKSQ-EAILKFTKSAAESTVTPTINEGGMQITIYLKNIEDRMLVDSSTR-PSDVCAFFIKTHDLDRAT-------NWALFESINDGTFERPLSSKESVYDLALSLSDNGKLIVKENYLLEKLAPHQSASFNSG--GVIHFLRDK--------------------SSWKKVYLEIKQGMLRVAXXXXXXXXXXXFGIVDAQVLLYSGIDPKKKGPANNKFGFMIKVNGSISNTQPRYFCSDQEEIINMFMAVILNLRYPVGIWTDRCSKDFR 3146
            EE + LR+++E+    D   QV   ++       RT Y +     D   W  AI K        L +Q++    IP +V +C+ Y+    LT       EGIYRK G  ++ + L +   QDA +V L   E + V  +   LK++LRDLP+ L T     ++L+ +     +  E++ RYR+L+  LP +N   ++ALI HL+ V   S  N M + N++++FGP +    +T  QD     YK   V++DL+ +Y  +F VDE E + Q E I    K     T + T + G    T+YL+  E +   +   + P+ + A  +    LDR          W  FE       ERPL   E V  +   L  +  L+VK++  +E +  + ++       G++ F  D+                    SS  ++Y E++       + + S +   ++ I   +V  Y G+  K + P    +GF +         Q  Y C D +  +  + A  L +++   +W    S+  R
Sbjct:  901 EEPLQLRKLQELSIQGDSENQVLVLVERR-----RTLYIQGERRLDFMGWLGAIQKAAASMGDTLSEQQLGDSDIPVIVYRCVDYITQCGLTS------EGIYRKCGQTSKTQRLLESLRQDARSVHLKEGEQH-VDDVSSALKRFLRDLPDGLFTRAQRLTWLEASE--IEDEEEKVSRYRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNVHNLAIVFGPTLF---QTDGQD-----YKAGRVVEDLINHYVVVFSVDEEELRKQREEITAIVKMRVAGTASGTQHAGDFICTVYLE--EKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKDYWTCFEVNEREEAERPLHFAEKVLPILHGLGTDSHLVVKKHQAMEAMLLYLASRVGDTKHGMMKFREDRSLLGLGLPSGGFHDRYFILNSSCLRLYKEVRSQRPWSGAPETSHRPEKEWPIKSLKV--YLGVKKKLRPPTC--WGFTVVHETEKHEKQQWYLCCDTQMELREWFATFLFVQHDGLVWPSEPSRVSR 1410

The following BLAST results are available for this feature:

BLAST of TCONS_00021761 vs. Swiss-Prot (Human)

BLAST of TCONS_00021761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARAP1	1.030e-49	35.84	Arf-GAP with Rho-GAP domain, ANK repeat and PH dom...	[more]

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TCONS_00021761 (transcript) - C. hemisphaerica