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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021769 ID=TCONS_00021769|Name=TCONS_00021769|organism=Clytia hemisphaerica|type=transcript|length=733bp
TTTAGATGAAAATCTTTAATTGCTCAATTTTTCAAACAAGACTTTTTATT
GCAGCTAACATATTGTGAAATAAATAATCAGATGGTAAATACTTGATATG
TGATGGCTGCAGCAGCTTCGCCAATAAACAATTTTCTGGCCAAACAAATT
GGTGTTCGTGTTATACGAGGTCCTGATTGGAAATGGGGCAAACAAGATGG
TGGTGAGGGCCATGTTGGAACTGTGCGGAGCTTTGAAAGTCATGAAGAAG
TAGTTGTTGTGTGGGATAATGGAACTGCAGCAAATTATAGATGCTCTGGT
GCTTATGATCTGCGTATCTTTGATTCAGGACCGGCTGGCATAAAGCATGA
CGGGACACAGTGTTGTGAATGTCAATCGAATCCAATCTACGGAACTTTAT
GGAAGTGTGTGGAGTGCAGTGAAGAGATGTGCAGTACTTGTTATCACAAT
GATCGGCATAACTTGAGACATCGATTTCATCAACTTGTTGCTCCTGGTTC
AAATAAGGTATTGGTTGAACCACGAAGAAAGAGCAAGAAGATCACAGCTC
GTGGAATGTTTCCTGGTTCAAGAGTCATTCGTGGTGTTGATTGGCATTGG
GAATCTCAAGATGGAAGGCGAGGAAAGATCACAGAAATTCAAGATTGGAG
TTTGTTGCTTCCACGTTCTGCAGCTTACGTTGTGTGGGACACTGGTGCAA
AAAATCTTTATCGTTTAGGCTCTGAAGGAATGG Run BLAST on NCBI transcript from alignment at sc0000394:285875..287158+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021769 ID=TCONS_00021769|Name=TCONS_00021769|organism=Clytia hemisphaerica|type=transcript|length=1284bp|location=Sequence derived from alignment at sc0000394:285875..287158+ (Clytia hemisphaerica)
TTTAGATGAAAATCTTTAATTGCTCAATTTTTCAAACAAGACTTTTTATT
GCAGCTAACATATTGTGAAATAAATAATCAGATGGTAAATACTTGATATG
TGATGGCTGCAGCAGCTTCGCCAATAAACAATTTTCTGGCCAAACAAATT
GGTGTTCGTGTTATACGAGGTCCTGATTGGAAATGGGGCAAACAAGATGG
TGGTGAGGGCCATGTTGGAACTGTGCGGAGCTTTGAAAGTCATGAAGAAG
TAGTTGTTGTGTGGGATAATGGAACTGCAGCAAATTATAGATGCTCTGGT
GCTTATGATCTGCGTATCTTTGATTCAGGACCGGCTGGTTTGTAGTTTTC
ATTACATAAtagaataacttttttattcatattttgaaaaggatgggcat
tcatacctttttgtattttaaattATTAATTGGTGGATTAGTATGATGTA
TTTCATTTATTATCTCTGTTAACAGCAAATTGGAGAAAATTTTCTCTTGT
TTTCCAGGCATAAAGCATGACGGGACACAGTGTTGTGAATGTCAATCGAA
TCCAATCTACGGAACTTTATGGAAGTGTGTGGAGTGCAGTGAAGAGATGT
GCAGTACTTGTTATCACAATGATCGGCATAACTTGAGACATCGATTTCAT
CAACTTGTTGCTCCTGGTTCAAATAAGTAGGTCTTTACTACTCTGCTTTT
GAGTCCCATGACTCtatgaaacttttttataaatagtCACTGCCTCTCTT
CTTAAAATAACAGAGGACTAAAATGGATGCTTTTCAAAATGAGAGTTTCT
AACAAAACTCTTCTCATAATTCCAAACCTACCTACAAGGGAATCGTTCAT
TGAATAcattttctgtttcaattttccAGGGTATTGGTTGAACCACGAAG
AAAGAGCAAGAAGATCACAGCTCGTGGAATGTTTCCTGGTTCAAGAGTCA
TTCGTGGTGTTGATTGGCATTGGGAATCTCAAGATGGTAACTCTTTCATT
TGCTTGATTTTTTAATCTAATTCTTTGTAATAATTTCATCAGTTTGAGGT
ATGTTGTTTTGCTGGTAGCTTGGGAACATTGCGAACACAATGACAACCAT
CTGCCTTTTTCAACATGTCAAAAGTAGTATCAGAAATCTCAACTGTTTTT
TTAAGGTGTTGCAGGAAGGCGAGGAAAGATCACAGAAATTCAAGATTGGA
GTTTGTTGCTTCCACGTTCTGCAGCTTACGTTGTGTGGGACACTGGTGCA
AAAAATCTTTATCGTTTAGGCTCTGAAGGAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021769-exon-sc0000394-1491911889:285875..286211 | TCONS_00021769-exon-sc0000394-1491911889:285875..286211 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1510915933:285875..286211 | TCONS_00021769-exon-sc0000394-1510915933:285875..286211 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1575043694:285875..286211 | TCONS_00021769-exon-sc0000394-1575043694:285875..286211 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1491911889:286382..286550 | TCONS_00021769-exon-sc0000394-1491911889:286382..286550 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1510915933:286382..286550 | TCONS_00021769-exon-sc0000394-1510915933:286382..286550 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1575043694:286382..286550 | TCONS_00021769-exon-sc0000394-1575043694:286382..286550 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1491911889:286754..286860 | TCONS_00021769-exon-sc0000394-1491911889:286754..286860 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1510915933:286754..286860 | TCONS_00021769-exon-sc0000394-1510915933:286754..286860 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1575043694:286754..286860 | TCONS_00021769-exon-sc0000394-1575043694:286754..286860 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1491911889:287039..287158 | TCONS_00021769-exon-sc0000394-1491911889:287039..287158 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1510915933:287039..287158 | TCONS_00021769-exon-sc0000394-1510915933:287039..287158 | Clytia hemisphaerica | exon |
| TCONS_00021769-exon-sc0000394-1575043694:287039..287158 | TCONS_00021769-exon-sc0000394-1575043694:287039..287158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:285875..287158 + |
Blast
BLAST of TCONS_00021769 vs. Swiss-Prot (Human)
Match: MIB1 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 6.105e-101 Identity = 146/206 (70.87%), Postives = 168/206 (81.55%), Query Frame = 1
Query: 127 NNFLAKQIGVRVIRGPDWKWGKQDGGEGHVGTVRSFESHEEVVVVWDNGTAANYRCSGAYDLRIFDSGPAGIKHDGTQCCECQSNPIYGTLWKCVECSE-EMCSTCYHNDRHNLRHRFHQLVAPGSNKVLVEPRRKSKKITARGMFPGSRVIRGVDWHWESQD---GRRGKITEIQDWSLLLPRSAAYVVWDTGAKNLYRLGSEGM 732
N + + +G RV+RGPDWKWGKQDGGEGHVGTVRSFES EEVVVVWDNGTAANYRCSGAYDLRI DS P GIKHDGT C C+ PI G WKC EC+ ++C+ CYH D+H+LRHRF+++ PGS +VL+E RRKSKKITARG+F G+RV+RGVDW WE QD GRRGK+TEIQDWS P SAAYV+WD GAKNLYR+G EGM
Sbjct: 7 NRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYRCSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWSASSPHSAAYVLWDNGAKNLYRVGFEGM 212
The following BLAST results are available for this feature:
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