TCONS_00021780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021780
Unique NameTCONS_00021780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021780 ID=TCONS_00021780|Name=TCONS_00021780|organism=Clytia hemisphaerica|type=transcript|length=867bp
AGACTCACTAAGCTTTCTGATTGAATTCTCTCTCTCTATACATCAAAgtt
aaaatgtttgaaaagattttgtttatgaGAAACTTATTCGTGATAAGGTG
TTGAATTTTGCTGAACTACTATTTTGCCAAAGTCTTGAACAGTGTATTTT
GATTAAGATTTGaggtagaaaatgaaattgttgaagatCAGTGGATATTT
TGATTATTTGCGTGAAGGAGAAGAAGAGAGTGGAGAGGAAGAACGAGATT
TCTCTGAACAAAAATGTCTGGAAGTTCTGCAAAACCTCCAAATGGAACAG
TACGAAGAGATCGCGGACATTCCGATGAGTGCTTTGGATGACTTGTTCCT
GGAGGTGATTGGTGGAGACAAGTACATCAAGATGGATCCCAATCAAGAAC
AAGACGTCCTCGATCTCTTCGAAGAATGCACAgTCGATAAGAAAGTAGAC
CTCGAGATGATGGCCAAAGTGTTGGGATATTTATTGAGGAGGGATTGTTC
GAAAAAGACAGCGTTATTAGTTGTGGATGTTCAGAATGATTTCATCTCTG
GATCGTTAGCGTTGAAAAATTCACCAGCAAATCAAGATGGGGAAGAAATA
GTGGAAGTGGTGAACAACATCTTGGAAGAACATCCTTTTGATGCTGTTGT
TTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTCTACACAAACG
TCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGCAGAAGAAGCG
AAAGTGTTGGATAAGGTGGTGTACGACGGTCACAAACCAATCGAACAAGT
CCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCTGAACTGCATT
CAGAACTAAATGTAAGA
Run BLAST on NCBI

transcript from alignment at sc0000394:212570..217745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021780 ID=TCONS_00021780|Name=TCONS_00021780|organism=Clytia hemisphaerica|type=transcript|length=5176bp|location=Sequence derived from alignment at sc0000394:212570..217745- (Clytia hemisphaerica)
AGACTCACTAAGCTTTCTGATTGAATTCTCTCTCTCTATACATCAAAGTT
AAAATGTTTGAAAAGATTTTGTTTATGAGAAACTTATTCGTGATAAGGTG
TTGAATTTTGCTGAACTACTATTTTGCCAAAGTCTTGAACAGTGTATTTT
GATTAAGGTTTGTATTTGAATTGTTTAATGATATTTAATGATGGTTAATT
ATCGCGTAATTGATAAAAACCCATCGATAGATGACACAAAAAACTGTCAT
GTTCAAGGAAGTGTTTGAAGTTATAGTCTGTGCATATTATCATGTGAGAA
AATTTTTCATCTGTTGATTTATAGATTTGAGGTAGAAAATGAAATTGTTG
AAGATCAGTGGATATTTTGATTATTTGCGTGAAGGAGAAGAAGAGAGTGG
AGAGGAAGAACGAGATTTCTCTGAACAAAAATGTCTGGAAGTTCTGCAAA
ACCTCCAAATGTAAGTGACATTAAGTAGATAAGTCATTATGTATTACACT
ACTGAACTTGACAAAACACGAGACCACGAACTTCTAATCATTCCACACTT
CTAATTCACCGGTGACTTATCTCATCATTCACTAGAAGATGACAAGGAAT
GATTTTGAACTCAAACAAATTGTCTCCGAGTCTCAAAGAAACTGCCATCA
AATATTCCCAACATGAAGTAAATACTTCTTCCTTAGGGAACAGTACGAAG
AGATCGCGGACATTCCGATGAGTGCTTTGGATGACTTGTTCCTGGAGGTG
ATTGGTGGAGACAAGTACATCAAGATGGATCCCAATCAAGAACAAGACGT
CCTCGATCTCTTCGAAGAATGCACAGTGAGTCATTTCATTGCACCATAGA
CCTGATGGTTAGCATTGACTAGTGGAGATGGGAGAATCTAAACCACCCCC
TGTCTCACTATTCTTTAAATCACGAAGTCATACTTTCGTTCCAAGTTTGT
TTTCTTGATTTTAGGTCGATAAGAAAGTAGACCTCGAGATGATGGCCAAA
GTGTTGGGATATTTATTGAGGAGGGATTGTTCGAAAAAGACAGCGTTATT
AGTTGTGGATGTTCAGAATGATTTCATCTCTGGATCGTTAGCGTTGAAAA
ATTCACCAGCAAATCAAGATGGGGAAGAAATAGTGGAAGTGGTGAACAAC
ATCTTGGAAGAACATTCTTTTGATGCTGTTGTTTACACCACTGATTGGCA
TCCTGAAGACCATTGTTCTTTCTACACAAACGTCTCTAAATACCCTCTTC
ATGAAAGTTCCACCGTCTCCGCAGAAGAAGCAAAAGTGTTGGATAAGGTG
GTGTATGACGGTGACAAACCAATCGAACAAGTCCTATGGCCTCCACATTG
CATACAAGAGTCAGAGGGAGCTGAGCTACATTCAGAACTAAATGTAAGAA
CGTTGAAAAGTCTTTTAAATATGTGTTGATTCTAAACTTCGTTCTTTTTA
ATACATTTCTTAGAAACTCAAAGTATTCTTTTGTATTGGTTGCCACAATT
TTATCTTTATTTCACACACAGGTAAAAGAAGATTCGATCCGCATCTTAAA
AGGAACACACCCTCAGATCGACAGTTACAGTGCATTCTGGGATAACGGAC
GCTCGACACAAACAATTCTATTCCAAGAATTCATCGATCGTAAAATCACC
CATGTTTTTGTGTGTGGACTTGCGACGGACTTTTGTGTAGCATACACAGC
TTTCGATAGTAACACTCATGGTTTTCAAACCTTCGTCATCGAAGATGCAT
GTCGTGGTGTTTGCGATGAAAGCATCGAAGGTATGAAAACAAAAGAAAAG
CGAAATGGAATCAAAATCATTGAAAGTTCCGACATCAAAGACATTATCGA
AATTTAAAATGGAATGACAATAATAGTTGATAAGGCGATGTTAAATGGAT
GAGCTCAAAACTGTTGAGATGTAGAATATTAAATGAATTTGAACAGTTTG
GCATCATTTTTTATAAATGAAGGAGGGGAAATAATTAAATGACACGTGAC
CTGGTAGACCATGAATAGTGTNAAATTCACCAGCAAATCAAGATGGGGAA
GAAATAGTGGAAGTGGTGAACAACATCTTGGAAGAACATCCTTTTGATGC
TGTTGTTTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTCTACA
CAAACGTCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGCAGAA
GAAGCGAAAGTGTTGGATAAGGTGGTGTACGACGGTCACAAACCAATCGA
ACAAGTCCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCTGAAC
TGCATTCAGAACTAAATGTAAGAACGTTAAAAAGTCTTTTAAATATGTGT
TGATTCTAAACTTCGTTCTTTTTAGTACATCATTTCTTAGAAACTCAAAG
TATTCTTTTGTATTGGTTGCCACAATTTTATCTTTATTTCACACACAGGT
AAAAGAAGATTCGATTCGCATCTTAAAAGGAACACACCCTCAGATCGACA
GTTACAGTGCATTCTGGGATAACGGACGCTCGACACAAACAATTCTATTC
CAAGAATTCATCGATCGTAAAATCACCCATGTTTTTGTGTGTGGACTTGC
GACGGACTTTTGTGTAGCATACACAGCTTTCGATAGTAACACTCATGGTT
TTCAAACCTTCGTCATCGAAGATGCATGTCGTGGTGTTTGCGATGAAAGC
ATCGAAGGTATGAAAACAAAAGAAAAGCGAAATGGAATCAAAATCATTGA
AAGTTCCGACATCAAAGACATTATCGAAATTTAAAATGGAATGACAATAA
TAGTTGATAAGGCGATGTTAAATGGATGAGCTCAAAACTGTTGAGATGTA
GAATATTAAATGAATTTGAACAGTTTGGCATCATTTTTTATAAATGAAGG
AGGGGAAATAATTAAATGACACGTGACCTGGTAGACCATGAATAGTGTTA
GGAAAATAAACGAACGATGTAAAATATTTCAAAACATATCATATTTAAGG
TTGATATTATTCTAACTTAATACTAGGTAAAATATAAAAATTGTAGGATT
CTTAAGTTAAGGAGGAAGATAGAAAAATATTTTAAAAAGTGCATTTCGAA
ATGCCAGAGCATCTTTTTATCACGTGACCGAAGTTTTCCTCAACCTGTTA
TCAGAAGTTCGTTTGCGGCGGTTTTCAATATCTTGCCACAACATTGGAGG
TGATGAGAAGATTTTCTTTTGGTGATTACACCTGTACATTTTCTCCTCCT
CCATCACACTATCCACCCATGGTAAAGGGTTCGTGAAGGTCGGATCAGGA
GACGAGTAAAGGTTTTTCTTTTTGGACACACGTCCTCCTCCATGATATCT
GAAAGGTTTACTTTGCTCGTCAGTTTGCGACAGCCATCGTTTGTAAGCAT
CGTCCGCTTGCTGCTGCTTCTCTTGAGTTCTCTCTTCTTCCAAATTTCTC
TCGTGTTTCTTTCGTAAACGTGTTTCTTTTTCTTGAGCTTTCTTTTTCTC
GTACCATTCATCGTAATTCTGTTTGGCTTTTTCCTCCAGTAAGTCCTTCT
CTTGCTTTTCCTATATCAAAAAATAAAAGTTTCAAGGATAGTAAGTTTAT
ATTTTTCCCTTCATCAAGTGTTTAGTAAGGCGACACTAGTACTAGTGGGT
GTTGTCTCAGAAAGGTTTACTCCATGCCGTACTAACAGCTGTGGGGAAGG
TTATATAAAGCAAATGGCTAAGGTTTAGTTTATCTATTCATATTAAACAG
ATAAGCAGACAGTCCTCTCCATAATTGGCATTTGAACATTTACATACCTT
TAATCTTTGAAATTCTTTTTGAGCGAGTTCTTCACACCGTTGTTTTTCAG
CTTGGAACTTTTTCCTCTTCATCCAATCTTGACGATTTTCTGCTGCTTGC
ATTTCTTTCTTCATCTTCTCTTCTCGTTCTTGTGAACGTTTCTTGTCCAA
CTCTTTCTTCTTGACGTTGATCAGTTTGATTCTCTTCATCTCAAGCATGG
CTTTCTCCAGGAACCAATCATCCCAAGTCTTTCCTTTCAAATCGATCATC
TCATCCAGGCTACAAAAGAGAAGAACTCAATATTTAACCCTTTGACGCCT
ACGGACGTAAAATTATACTTTAATGGGATAAACTTTCGCGGTTGGGCTTA
TCCGCGAAATTCAAAAATTTCGCGGGTGGCACTATTGGGTGGCATTATTT
TCACGATTTTGTTACTTTTACTGTCAAAAAACATGCATGTTGGTTGTTGA
AGTACACATTATTAGCGCTTCTTTGATGCAAGTAACCATTCAAAATAGTA
TTTATTTGACATATTTTGAGTTTTATTGAGAAATAATTCGCGGATGAGGC
CCTTCCAAATTTCCATTGGGACTTAATTTCGCGGATTTTCCTCGAAATCC
ACGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTACCCAAAATAA
TTCAATTTCATCCCACTGTAAACAGGTCATANGCGGACATTCCGATAAGT
GCTTTGGATGACTTGTTCCTGGAGGTGATTGGTGGAGACAAGTACATCAA
GATGGATCCCAATCAAGAACAAGACGTCCTCGATCTCTTCGAAGAATGCA
CAGTGAGTCATTTCATTGCACCATAGACCTGATGGTTAGCATTGACTAGT
GGAGATGGGAGAATCTAAACCACCCCCTGTCTCACTATTCTTTAAATCAC
GAAGTCATACTTTCGTTCCAAGTTTGTTTTCTTGATTTTAGGTCGATAAG
AAAGTAGACCTCGAGATGATGGCCAAAGTGTTGGGATATTTATTGAGGAG
GGATTGTTCGAAAAAGACAGCGTTATTAGTTGTGGATGTTCAGAATGATT
TCATCTCTGGATCGTTAGCGTTGAAAAATTCACCAGCAAATCAAGATGGG
GAAGAAATAGTGGAAGTGGTGAACAACATCTTGGAAGAACATCCTTTTGA
TGCTGTTGTTTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTCT
ACACAAACGTCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGCA
GAAGAAGCGAAAGTGTTGGATAAGGTGGTGTACGACGGTCACAAACCAAT
CGAACAAGTCCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCTG
AACTGCATTCAGAACTAAATGTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012222XLOC_012222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021780-exon-sc0000394-1575043694:217589..217745TCONS_00021780-exon-sc0000394-1575043694:217589..217745Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1575043694:217286..217421TCONS_00021780-exon-sc0000394-1575043694:217286..217421Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1575043694:216921..217059TCONS_00021780-exon-sc0000394-1575043694:216921..217059Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1575043694:212570..213004TCONS_00021780-exon-sc0000394-1575043694:212570..213004Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1510915933:217589..217745TCONS_00021780-exon-sc0000394-1510915933:217589..217745Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1510915933:217286..217421TCONS_00021780-exon-sc0000394-1510915933:217286..217421Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1510915933:216921..217059TCONS_00021780-exon-sc0000394-1510915933:216921..217059Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1510915933:212570..213004TCONS_00021780-exon-sc0000394-1510915933:212570..213004Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1491911889:217589..217745TCONS_00021780-exon-sc0000394-1491911889:217589..217745Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1491911889:217286..217421TCONS_00021780-exon-sc0000394-1491911889:217286..217421Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1491911889:216921..217059TCONS_00021780-exon-sc0000394-1491911889:216921..217059Clytia hemisphaericaexon
TCONS_00021780-exon-sc0000394-1491911889:212570..213004TCONS_00021780-exon-sc0000394-1491911889:212570..213004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:212570..217745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.08088	8.73577	14.9216	10.5836	15.7076	11.8929	16.9006	15.1047	7.3542	8.04777	5.3732	2.26095	5.52539	4.86313	1.20542	2.55431	4.68201	6.87409	2.50242	1.97843	4.56665	4.26394	3.85073	5.79176	10.1637	7.17947	0.744847	0	1.39454	1.0256
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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