TCONS_00021782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021782
Unique NameTCONS_00021782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021782 ID=TCONS_00021782|Name=TCONS_00021782|organism=Clytia hemisphaerica|type=transcript|length=1148bp
ATTCGAGACGTTGGAGAAAGGAAAGGCGATGCACAGAGCGAGATTTGagg
tagaaaatgaaattgttgaagatCAGTGGATATTTTGATTATTTGCGTGA
AGGAGAAGAAGAGAGTGGAGAGGAAGAACGAGATTTCTCTGAACAAAAAT
GTCTGGAAGTTCTGCAAAACCTCCAAATGGAACAGTACGAAGAGATCGCG
GACATTCCGATGAGTGCTTTGGATGACTTGTTCCTGGAGGTGATTGGTGG
AGACAAGTACATCAAGATGGATCCCAATCAAGAACAAGACGTCCTCGATC
TCTTCGAAGAATGCACAgTCGATAAGAAAGTAGACCTCGAGATGATGGCC
AAAGTGTTGGGATATTTATTGAGGAGGGATTGTTCGAAAAAGACAGCGTT
ATTAGTTGTGGATGTTCAGAATGATTTCATCTCTGGATCGTTAGCGTTGA
AAAATTCACCAGCAAATCAAGATGGGGAAGAAATAGTGGAAGTGGTGAAC
AACATCTTGGAAGAACATTCTTTTGATGCTGTTGTTTACACCACTGATTG
GCATCCTGAAGACCATTGTTCTTTCTACACAAACGTCTCTAAATACCCTC
TTCATGAAAGTTCCACCGTCTCCGCAGAAGAAGCAAAAGTGTTGGATAAG
GTGGTGTATGACGGTGACAAACCAATCGAACAAGTCCTATGGCCTCCACA
TTGCATACAAGAGTCAGAGGGAGCTGAGCTACATTCAGAACTAAATGTAA
AAGAAGATTCGATCCGCATCTTAAAAGGAACACACCCTCAGATCGACAGT
TACAGTGCATTCTGGGATAACGGACGCTCGACACAAACAATTCTATTCCA
AGAATTCATCGATCGTAAAATCACCCATGTTTTTGTGTGTGGACTTGCGA
CGGACTTTTGTGTAGCATACACAGCTTTCGATAGTAACACTCATGGTTTT
CAAACCTTCGTCATCGAAGATGCATGTCGTGGTGTTTGCGATGAAAGCAT
CGAAGgtatgaaaacaaaagaaaagcgAAATGGAATCAAAATCATTGAAA
GTTCCGACATCAAAGACATTATCGAAATTTAAAATGGAATGACAATAATA
GTTGATAAGGCGATGTTAAATGGATGAGCTCAAAACTGTTGAGATGTA
Run BLAST on NCBI

protein sequence of TCONS_00021782-protein

>TCONS_00021782-protein ID=TCONS_00021782-protein|Name=TCONS_00021782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MKLLKISGYFDYLREGEEESGEEERDFSEQKCLEVLQNLQMEQYEEIADI
PMSALDDLFLEVIGGDKYIKMDPNQEQDVLDLFEECTVDKKVDLEMMAKV
LGYLLRRDCSKKTALLVVDVQNDFISGSLALKNSPANQDGEEIVEVVNNI
LEEHSFDAVVYTTDWHPEDHCSFYTNVSKYPLHESSTVSAEEAKVLDKVV
YDGDKPIEQVLWPPHCIQESEGAELHSELNVKEDSIRILKGTHPQIDSYS
AFWDNGRSTQTILFQEFIDRKITHVFVCGLATDFCVAYTAFDSNTHGFQT
FVIEDACRGVCDESIEGMKTKEKRNGIKIIESSDIKDIIEI
Run BLAST on NCBI

transcript from alignment at sc0000394:215823..218163-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021782 ID=TCONS_00021782|Name=TCONS_00021782|organism=Clytia hemisphaerica|type=transcript|length=2341bp|location=Sequence derived from alignment at sc0000394:215823..218163- (Clytia hemisphaerica)
ATTCGAGACGTTGGAGAAAGGAAAGGCGATGCACAGAGCGAGGTCTGTTT
ATGATGAGCGTGTACGCGTTTGAGAACAAACTATATAATAACATAAGGCT
TCGATGGCCAAAATATTAAGAACAAGTTAAGAACACTTTAAGGCTTTGCT
GCTTCCCAGTAGATAAAAGTAGATAACTATAAGAGAAGGTGAAAATTTCC
CTTCGCTGATATAATTGGTGTTTCGTTAATGTTTGTTTTGCAATAACATA
ACACTACGTTGACATTATAAAGTATCGACTTGCAGACGCGTGATTCAACG
AGCGAAATAAACATGTTTTGATCCCGTTAGATAAGTTGGCTTTTTATGAT
AGCATTTATATGTTTAATGAATTGTTTCTCTTAGGCTTACCACTGAGAGA
TGGTCGTGCTTTTATAATAGACTCACTAAGCTTTCTGATTGAATTCTCTC
TCTCTATACATCAAAGTTAAAATGTTTGAAAAGATTTTGTTTATGAGAAA
CTTATTCGTGATAAGGTGTTGAATTTTGCTGAACTACTATTTTGCCAAAG
TCTTGAACAGTGTATTTTGATTAAGGTTTGTATTTGAATTGTTTAATGAT
ATTTAATGATGGTTAATTATCGCGTAATTGATAAAAACCCATCGATAGAT
GACACAAAAAACTGTCATGTTCAAGGAAGTGTTTGAAGTTATAGTCTGTG
CATATTATCATGTGAGAAAATTTTTCATCTGTTGATTTATAGATTTGAGG
TAGAAAATGAAATTGTTGAAGATCAGTGGATATTTTGATTATTTGCGTGA
AGGAGAAGAAGAGAGTGGAGAGGAAGAACGAGATTTCTCTGAACAAAAAT
GTCTGGAAGTTCTGCAAAACCTCCAAATGTAAGTGACATTAAGTAGATAA
GTCATTATGTATTACACTACTGAACTTGACAAAACACGAGACCACGAACT
TCTAATCATTCCACACTTCTAATTCACCGGTGACTTATCTCATCATTCAC
TAGAAGATGACAAGGAATGATTTTGAACTCAAACAAATTGTCTCCGAGTC
TCAAAGAAACTGCCATCAAATATTCCCAACATGAAGTAAATACTTCTTCC
TTAGGGAACAGTACGAAGAGATCGCGGACATTCCGATGAGTGCTTTGGAT
GACTTGTTCCTGGAGGTGATTGGTGGAGACAAGTACATCAAGATGGATCC
CAATCAAGAACAAGACGTCCTCGATCTCTTCGAAGAATGCACAGTGAGTC
ATTTCATTGCACCATAGACCTGATGGTTAGCATTGACTAGTGGAGATGGG
AGAATCTAAACCACCCCCTGTCTCACTATTCTTTAAATCACGAAGTCATA
CTTTCGTTCCAAGTTTGTTTTCTTGATTTTAGGTCGATAAGAAAGTAGAC
CTCGAGATGATGGCCAAAGTGTTGGGATATTTATTGAGGAGGGATTGTTC
GAAAAAGACAGCGTTATTAGTTGTGGATGTTCAGAATGATTTCATCTCTG
GATCGTTAGCGTTGAAAAATTCACCAGCAAATCAAGATGGGGAAGAAATA
GTGGAAGTGGTGAACAACATCTTGGAAGAACATTCTTTTGATGCTGTTGT
TTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTCTACACAAACG
TCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGCAGAAGAAGCA
AAAGTGTTGGATAAGGTGGTGTATGACGGTGACAAACCAATCGAACAAGT
CCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCTGAGCTACATT
CAGAACTAAATGTAAGAACGTTGAAAAGTCTTTTAAATATGTGTTGATTC
TAAACTTCGTTCTTTTTAATACATTTCTTAGAAACTCAAAGTATTCTTTT
GTATTGGTTGCCACAATTTTATCTTTATTTCACACACAGGTAAAAGAAGA
TTCGATCCGCATCTTAAAAGGAACACACCCTCAGATCGACAGTTACAGTG
CATTCTGGGATAACGGACGCTCGACACAAACAATTCTATTCCAAGAATTC
ATCGATCGTAAAATCACCCATGTTTTTGTGTGTGGACTTGCGACGGACTT
TTGTGTAGCATACACAGCTTTCGATAGTAACACTCATGGTTTTCAAACCT
TCGTCATCGAAGATGCATGTCGTGGTGTTTGCGATGAAAGCATCGAAGGT
ATGAAAACAAAAGAAAAGCGAAATGGAATCAAAATCATTGAAAGTTCCGA
CATCAAAGACATTATCGAAATTTAAAATGGAATGACAATAATAGTTGATA
AGGCGATGTTAAATGGATGAGCTCAAAACTGTTGAGATGTA

Coding sequence (CDS) from alignment at sc0000394:215823..218163-

>TCONS_00021782 ID=TCONS_00021782|Name=TCONS_00021782|organism=Clytia hemisphaerica|type=CDS|length=4104bp|location=Sequence derived from alignment at sc0000394:215823..218163- (Clytia hemisphaerica)
GTAAAAGAAGATTCGATCCGCATCTTAAAAGGAACACACCCTCAGATCGA
CAGTTACAGTGCATTCTGGGATAACGGACGCTCGACACAAACAATTCTAT
TCCAAGAATTCATCGATCGTAAAATCACCCATGTTTTTGTGTGTGGACTT
GCGACGGACTTTTGTGTAGCATACACAGCTTTCGATAGTAACACTCATGG
TTTTCAAACCTTCGTCATCGAAGATGCATGTCGTGGTGTTTGCGATGAAA
GCATCGAAGGTATGAAAACAAAAGAAAAGCGAAATGGAATCAAAATCATT
GAAAGTTCCGACATCAAAGACATTATCGAAATTTAAGTCGATAAGAAAGT
AGACCTCGAGATGATGGCCAAAGTGTTGGGATATTTATTGAGGAGGGATT
GTTCGAAAAAGACAGCGTTATTAGTTGTGGATGTTCAGAATGATTTCATC
TCTGGATCGTTAGCGTTGAAAAATTCACCAGCAAATCAAGATGGGGAAGA
AATAGTGGAAGTGGTGAACAACATCTTGGAAGAACATTCTTTTGATGCTG
TTGTTTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTCTACACA
AACGTCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGCAGAAGA
AGCAAAAGTGTTGGATAAGGTGGTGTATGACGGTGACAAACCAATCGAAC
AAGTCCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCTGAGCTA
CATTCAGAACTAAATGGAACAGTACGAAGAGATCGCGGACATTCCGATGA
GTGCTTTGGATGACTTGTTCCTGGAGGTGATTGGTGGAGACAAGTACATC
AAGATGGATCCCAATCAAGAACAAGACGTCCTCGATCTCTTCGAAGAATG
CACAATGAAATTGTTGAAGATCAGTGGATATTTTGATTATTTGCGTGAAG
GAGAAGAAGAGAGTGGAGAGGAAGAACGAGATTTCTCTGAACAAAAATGT
CTGGAAGTTCTGCAAAACCTCCAAATGTAAAAGAAGATTCGATCCGCATC
TTAAAAGGAACACACCCTCAGATCGACAGTTACAGTGCATTCTGGGATAA
CGGACGCTCGACACAAACAATTCTATTCCAAGAATTCATCGATCGTAAAA
TCACCCATGTTTTTGTGTGTGGACTTGCGACGGACTTTTGTGTAGCATAC
ACAGCTTTCGATAGTAACACTCATGGTTTTCAAACCTTCGTCATCGAAGA
TGCATGTCGTGGTGTTTGCGATGAAAGCATCGAAGGTATGAAAACAAAAG
AAAAGCGAAATGGAATCAAAATCATTGAAAGTTCCGACATCAAAGACATT
ATCGAAATTTAAGTCGATAAGAAAGTAGACCTCGAGATGATGGCCAAAGT
GTTGGGATATTTATTGAGGAGGGATTGTTCGAAAAAGACAGCGTTATTAG
TTGTGGATGTTCAGAATGATTTCATCTCTGGATCGTTAGCGTTGAAAAAT
TCACCAGCAAATCAAGATGGGGAAGAAATAGTGGAAGTGGTGAACAACAT
CTTGGAAGAACATTCTTTTGATGCTGTTGTTTACACCACTGATTGGCATC
CTGAAGACCATTGTTCTTTCTACACAAACGTCTCTAAATACCCTCTTCAT
GAAAGTTCCACCGTCTCCGCAGAAGAAGCAAAAGTGTTGGATAAGGTGGT
GTATGACGGTGACAAACCAATCGAACAAGTCCTATGGCCTCCACATTGCA
TACAAGAGTCAGAGGGAGCTGAGCTACATTCAGAACTAAATGGAACAGTA
CGAAGAGATCGCGGACATTCCGATGAGTGCTTTGGATGACTTGTTCCTGG
AGGTGATTGGTGGAGACAAGTACATCAAGATGGATCCCAATCAAGAACAA
GACGTCCTCGATCTCTTCGAAGAATGCACAATGAAATTGTTGAAGATCAG
TGGATATTTTGATTATTTGCGTGAAGGAGAAGAAGAGAGTGGAGAGGAAG
AACGAGATTTCTCTGAACAAAAATGTCTGGAAGTTCTGCAAAACCTCCAA
ATGTAAAAGAAGATTCGATCCGCATCTTAAAAGGAACACACCCTCAGATC
GACAGTTACAGTGCATTCTGGGATAACGGACGCTCGACACAAACAATTCT
ATTCCAAGAATTCATCGATCGTAAAATCACCCATGTTTTTGTGTGTGGAC
TTGCGACGGACTTTTGTGTAGCATACACAGCTTTCGATAGTAACACTCAT
GGTTTTCAAACCTTCGTCATCGAAGATGCATGTCGTGGTGTTTGCGATGA
AAGCATCGAAGGTATGAAAACAAAAGAAAAGCGAAATGGAATCAAAATCA
TTGAAAGTTCCGACATCAAAGACATTATCGAAATTTAAGTCGATAAGAAA
GTAGACCTCGAGATGATGGCCAAAGTGTTGGGATATTTATTGAGGAGGGA
TTGTTCGAAAAAGACAGCGTTATTAGTTGTGGATGTTCAGAATGATTTCA
TCTCTGGATCGTTAGCGTTGAAAAATTCACCAGCAAATCAAGATGGGGAA
GAAATAGTGGAAGTGGTGAACAACATCTTGGAAGAACATTCTTTTGATGC
TGTTGTTTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTCTACA
CAAACGTCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGCAGAA
GAAGCAAAAGTGTTGGATAAGGTGGTGTATGACGGTGACAAACCAATCGA
ACAAGTCCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCTGAGC
TACATTCAGAACTAAATGGAACAGTACGAAGAGATCGCGGACATTCCGAT
GAGTGCTTTGGATGACTTGTTCCTGGAGGTGATTGGTGGAGACAAGTACA
TCAAGATGGATCCCAATCAAGAACAAGACGTCCTCGATCTCTTCGAAGAA
TGCACAATGAAATTGTTGAAGATCAGTGGATATTTTGATTATTTGCGTGA
AGGAGAAGAAGAGAGTGGAGAGGAAGAACGAGATTTCTCTGAACAAAAAT
GTCTGGAAGTTCTGCAAAACCTCCAAATGTAAAAGAAGATTCGATCCGCA
TCTTAAAAGGAACACACCCTCAGATCGACAGTTACAGTGCATTCTGGGAT
AACGGACGCTCGACACAAACAATTCTATTCCAAGAATTCATCGATCGTAA
AATCACCCATGTTTTTGTGTGTGGACTTGCGACGGACTTTTGTGTAGCAT
ACACAGCTTTCGATAGTAACACTCATGGTTTTCAAACCTTCGTCATCGAA
GATGCATGTCGTGGTGTTTGCGATGAAAGCATCGAAGGTATGAAAACAAA
AGAAAAGCGAAATGGAATCAAAATCATTGAAAGTTCCGACATCAAAGACA
TTATCGAAATTTAAGTCGATAAGAAAGTAGACCTCGAGATGATGGCCAAA
GTGTTGGGATATTTATTGAGGAGGGATTGTTCGAAAAAGACAGCGTTATT
AGTTGTGGATGTTCAGAATGATTTCATCTCTGGATCGTTAGCGTTGAAAA
ATTCACCAGCAAATCAAGATGGGGAAGAAATAGTGGAAGTGGTGAACAAC
ATCTTGGAAGAACATTCTTTTGATGCTGTTGTTTACACCACTGATTGGCA
TCCTGAAGACCATTGTTCTTTCTACACAAACGTCTCTAAATACCCTCTTC
ATGAAAGTTCCACCGTCTCCGCAGAAGAAGCAAAAGTGTTGGATAAGGTG
GTGTATGACGGTGACAAACCAATCGAACAAGTCCTATGGCCTCCACATTG
CATACAAGAGTCAGAGGGAGCTGAGCTACATTCAGAACTAAATGGAACAG
TACGAAGAGATCGCGGACATTCCGATGAGTGCTTTGGATGACTTGTTCCT
GGAGGTGATTGGTGGAGACAAGTACATCAAGATGGATCCCAATCAAGAAC
AAGACGTCCTCGATCTCTTCGAAGAATGCACAATGAAATTGTTGAAGATC
AGTGGATATTTTGATTATTTGCGTGAAGGAGAAGAAGAGAGTGGAGAGGA
AGAACGAGATTTCTCTGAACAAAAATGTCTGGAAGTTCTGCAAAACCTCC
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012222XLOC_012222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021782-exon-sc0000394-1575043694:218122..218163TCONS_00021782-exon-sc0000394-1575043694:218122..218163Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1575043694:217286..217421TCONS_00021782-exon-sc0000394-1575043694:217286..217421Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1575043694:216921..217059TCONS_00021782-exon-sc0000394-1575043694:216921..217059Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1575043694:216353..216781TCONS_00021782-exon-sc0000394-1575043694:216353..216781Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1575043694:215823..216224TCONS_00021782-exon-sc0000394-1575043694:215823..216224Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1510915933:218122..218163TCONS_00021782-exon-sc0000394-1510915933:218122..218163Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1510915933:217286..217421TCONS_00021782-exon-sc0000394-1510915933:217286..217421Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1510915933:216921..217059TCONS_00021782-exon-sc0000394-1510915933:216921..217059Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1510915933:216353..216781TCONS_00021782-exon-sc0000394-1510915933:216353..216781Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1510915933:215823..216224TCONS_00021782-exon-sc0000394-1510915933:215823..216224Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1491911889:218122..218163TCONS_00021782-exon-sc0000394-1491911889:218122..218163Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1491911889:217286..217421TCONS_00021782-exon-sc0000394-1491911889:217286..217421Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1491911889:216921..217059TCONS_00021782-exon-sc0000394-1491911889:216921..217059Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1491911889:216353..216781TCONS_00021782-exon-sc0000394-1491911889:216353..216781Clytia hemisphaericaexon
TCONS_00021782-exon-sc0000394-1491911889:215823..216224TCONS_00021782-exon-sc0000394-1491911889:215823..216224Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021782-proteinTCONS_00021782-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:215823..218163 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.8605	30.218	56.0364	40.3806	20.548	12.3635	24.108	24.0656	22.7141	17.2941	9.73776	6.87051	10.7521	15.4412	8.20669	9.56268	35.7615	38.9964	21.3988	27.6867	19.8295	16.7645	15.1243	19.6994	10.6521	11.1806	2.08385	0.805112	2.07109	3.22565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000868Isochorismatase-like
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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