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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021805 ID=TCONS_00021805|Name=TCONS_00021805|organism=Clytia hemisphaerica|type=transcript|length=1563bp
GAAGAGCCAGGACATTGTTTTTAAGATGGAATCAGAAAATAATACAGAAA
ACCAGGGGCCAGCTCTTGTTGATTTAGACGAGAAAAAAGTGAATGTGGCC
GTGCGATTCTTGAACAACTTAAATGTTCGGGATACACCGAAAGaccataa
aatgaaatttttaatggCAAAAGGATTGAACGAACAAGAGATTGAATTAG
CAATGAAAAAAGCTGAAGCAATCCGTGAAAACACTAAAGAAAAGGAAGAG
GAAGAATGGACTTTTTGGGATTATTTCAAAGGCATTGTTCTCAGTGCTGG
TATCTTGTCGTCAGCTAATTATGCATACAAAGCATATGTATTGCCTTATG
TTGCTCATGAGATCAAAGATGACCAAAGGATTGAAACATTGAAAGACTCC
GTCCAAGTCTTAAAAGATGACTTGAAACAGAAAACATATGAGTTTACATG
CACCTTAAAGTCCATACAAAGTTTATTGGAAGATCAAAAGAAATTATTGG
GCAATATTGAAAAAGAACTTGGAAAGAAGCAAAATGATGATGTCTCTATG
ACTAATATAAAAACTGATTTGGCCTCCCTTAAAAGTATGATGTTGAGTAA
AGACAAGTTCCCAGCTGCTCCGTTTGTTTCAACTTCCGGTCCAAGCAGTG
CTGAAATTCCTGCCTGGCAAAAGGCTAAGGATGAGAAAAACAGCGACCTT
GTTTTGGAAGATGGAGAAGAGAAAAGCGAAGTCAAAATTACGGAAGAAAA
CAGTGATGAATAGAACTACGAatgcaataattttttttttttttacttgg
ttGATTGCAATTGCAAAATCGATATCAGTGTTAGCGTATTAGCGTTATCT
TGATGACAAATAATGAGTTATCTGTGATGACTCTAGGAATCTGATTAAAA
CTACAAGAAGCTTTTACACCTTAGCCGACAGACGCCCTTACGacttttta
aattctttattaAAAGAGGCTATAAAGGAGTTTCTAATGTGCTTAAAGTT
AGTTTTTTAACATATCTTGTTTTTGCCCGAATATTAGTGGAGAGATGAAA
AGATATCGAAAaattagccattttttattttgattgacattttgcaaaaa
GAAATGGCTGACGACAAGAAAATATTGCAAAGCTCATTTTTCGAACAAAT
TGATGTACACAAAGTTCACAATCTGTGAAACAAActtctgtttttgtttc
gagTAGATTCTTTGTGTACATGTCAAAAGATTTAACTAAGTATCTAAAAA
TACGGTTCCAGTAAATTCTATTTCTTTTAAGTTTAAGTATGTTTATCCTA
ATGGGATATTGTACTATTCatgatttaaatattttcaatttctttttgcg
TATGattcttttgtagatttttgggAAATATTGAGTCTGATTGAGTTATA
cttaatcatgtaaagcattcattttttatcattaaaaatcatatctatta
ttttttacaaattttcaatcgagaTGAAATATTATATTACAGTTTACAGT
TAACAGTTTACTTTGTACCTAGAGAAAGACTACTACTATTACTAAGAATT
TCTGTTATACATG Run BLAST on NCBI transcript from alignment at sc0000395:172109..181291+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021805 ID=TCONS_00021805|Name=TCONS_00021805|organism=Clytia hemisphaerica|type=transcript|length=9183bp|location=Sequence derived from alignment at sc0000395:172109..181291+ (Clytia hemisphaerica)
GAAGAGCCAGGACATTGTTTTTAAGGTAATCTATCAGATCTATAGTCTAA
CTCCAGTCCAGGTGAGGCAGTTAGGTGTTTGATGTCACACTGTTACCATA
TGCTTAAGGTTTGGTAAattatttgtatatttttgttCAGAAAATTAGCT
TTAGGGGTCCTCtagacaaaaaactttcaatttttttacagcCTGGACAG
TCTGTGCTGTGGGGCATCGCGTCGATAAGGAGAGAGGGGGTCTAACTATG
TTGATAAAAAAGCAAGTATTGGCAATTACGACCAAATctttttcagccaa
tttcttcCTACACAAACAAAGCAATTATAGTGGAaatacctttttctttt
tttttctatttggttgagttgcaggatggaggctttgaggcctatttttg
caactatagatgctttcaATGAGCACCCCGTCAGTActttggactgacta
cccaattctccTCACNAatgctttcaatgagcgccccgtcagtactttgg
actgactacccaattctcctcacatggcatgggttgacccgggtgaaggt
tcatttacttgccaagtgaaccgctgcaagTGGGAATCAAACCTACGACC
CTGCTGCCGATGCACCGGACACAAAAAAGTCCGGTGCCAAATGTCCGGTG
TCAAGATCGAATACTTTTGAGCACCGGATAATGTGCGCACCGGACATCTA
AAAGTCCGGTGTGTCCGGTACGCATTTGTACAAGGTTAGGGCGTCTTAGT
AAAGTTACCACCCTTTCTCCTAGGCGGTAATTTTTCGACACCGGACATAA
TAGCGAAACGGCAAAAATGACAACACCTCATCAGATCGTATATCTCACAC
TGGAAAATAATGTCCGGTGCATTTACAGAATACTCTTCTCCACCGGACAa
aacaccggacagtccggtgtgtCGTCAGGGTCGTTcaaacctcagtcgcc
tgtgcagcctCCGAAAgccacgtgcgtttgcgtagggtaaaatggcgaaa
tgcgaaaatcaaattggcaaaatttttttgaaaaatgacccggACAAGAT
TTgagtatatctttttattccatgaagagattactttcaaataaaaaatg
tattgacaatgaatgggtaagctctCTAGAAACACAAACATacattgcat
agcttttaccaaaaaatagcactttaggatcagaaacagtcaaaaaccag
ctttttccaattttcttcgagttacaggaattaattccttgtttgttttg
atctgaaattttcagtaggggtggccaacatggttcttTTGCTCATATCA
TTGGGGGGCCGAGACGGGGgcaagagaattaaagtttcttagtaaaatct
taattatcacccaaaaaagtgcctttttttgtcaacatcttttaaataga
ttgtcccagccttatacctctttcagtaaagcttcctatacggtcgtggc
ttcttcacaaagacaaaagacagatctggacttatttcgtactttccagt
ctctggttcgtagtttttctgactttcttgttctttgtgagttattttct
atgttttctaacttactgaatgacttgccgacagatcgccaccggtggga
ttcgaacccactaaatgcaaagttccgatattttgaaacccattgcctta
tccactgcgccacggattcatgccagaATAAcgcttctgacggctattta
tattgtacaaactgcagaccagNCGTCGCTAGGGTCGTTcaaacctcagt
cgcctgtgcagcctCCGAAAgccacgtgcgtttgcgtagggtaaaatggc
aaaatgcgaaaatcgaatacaccgtttaggagtgtcgactgcgcacgcgc
caatccaattttccattgttttgattttagcgatcacggaaaattcactc
tcctccgtaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaggtcgcctgcaggt
cctgacactattcccgcataccggatccgaaaaatagatacatgtcgatt
cgtctttatgaagaagccttcaccttcctataccttttatccttcagaaa
aaccaaaaatattggccttaattgcttgcttttagttcctgtagccagta
gtgtgacccctgTAATTCTAATTTAATTCGGgcgggttttttaatagaga
tgtcacatgactcaattcccgcagtcttattggactagagaaagtgaaag
tgaaattgcacgatctgattggatgaaaaaaagaccgcgggagctggaac
cgaatggaattctctggaattctcattctaaaacaagatggcggcgagtt
ttcacagaacatagtaaaactattcaggaacttagacctttttacagaat
ttaaaaaaatctgtttgtttgcgttcgtgtttcgcgttcctAAACCAAAT
GCACGTGAAGCATGTTCAAATTTCACAATACTGTAAtccaactttctttt
tattatggaaaccaaacgagtgagagtaagtatagacctttttttaaaga
ggcagccatgttgaataattatgtactccagcataaaaacaatgatacag
ccatgcataattactgtatcgtgcatattttaaaaattaggcatggctgt
atcattgtttttatgctggagtacataattgttcaacatggctgcctctt
taaaaaaggtctattaaagaGTAAGTCATTAAAGCTAAAAGTCAGCGCCA
GTGCCAGTCATAGTCGTGACGTAGGGTAGGTTTTGTAATCTATAAACATT
AATTAGTATGGTAATTTTCACAGTTTCTGGtttctacgtcattttttata
acCTCTTTTTAGGAGGAGAACGTGTCATTCTATGAGGaataaattttata
acactttttggcagattaaaaagacaatagaaaacaaaagtttcTTCGTT
Tatcattttcgcatttatggagaagaatgaaatttattttcattatatat
ttaagtttccattatcaaaattctagaaaatgctaatttgtagaccatat
tagaaaatgtttatatatttcacaaaataaacacttacaaaaagatatta
cttactgtgaagtcgggtaacttgcatcagtggagggaaacttgcatagc
catgaaacaaatgacctggctggtcattaaaataccaagttaaatcaaaa
caaaaatggtagagtagagctgcaagcagagctgcgtagtcaatttgttt
tgaaattttgattggtcagtcatttgatggctatgcaagtttccctccac
tgatgcaagttacccgacttcacggtactatTTTTTACCCCGCTTTTTAA
TATAATAATGCTATAcaagttcgcaggccaccgtgcgagcacatgggcct
ctatgaaccgctctttgttcagtttacaattttcttaagatagagttttt
tcctagggctcccctgactttgaatttaaagtttgcatTCTTTAGTGACG
TGTTCATTTCTTGGGCTTTCATACACCACTCTTTGATTgtcttcctttca
cttttcgTAAGATCTTCTGTCACACGGAAGGGCAATCTTTCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGATTGCTCT
Taacactgtatttttgtcttcttcgtttgcaaatcggacttttattggtc
gatagcgtttttcatcttccttttccttcgaaaattttccaattctttga
gtttcttcaatctttatattccttaaGCTTAGTTTCTTAGGTAAGActtt
ttcatttagatattcTTCGTCCTAGATTTTGGTTGACTCCTCTGAATCTT
CAGTGGATTCGTCAACACCATGAAGAATTAGATTGCACGACGTGGATTGA
ATCTGTCGTtcctcctgtttttcccttcgaagtatgttttctatgttttt
ctcgATTTGCCTCGACGCGACTGCTGCGTAGCNTTTTTTTAAACAGGGTC
TTCTGTGGGCGTGATATCTGGCGGAGACAAAACGCCCTCATTGTAAGATT
CTCAGGTTgtcttattgtttgttccttttgtcAAGTATGTAATGTGTTTG
CTTCTCACGCTAAcaacagttaggaacatttggcgagttcctgtacgcgg
ccgcaatcaaaaaaatcataaccccACTCATAAAGAATTACATTTGCgtc
tttttttaccgtttttttgcctagacgatatagcaaacatagtaattata
agcagactgtgcctttaattggctgtaaaaaatctttgcgCCGGTAGAAA
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACacctatttaaa
caaaattaaccagcgcatttcttatctttctactttttcattttcaatga
agctctcaaagtcaaatagaattaagcacataacatattcttataattGC
GAAATGTTGTTTGTGCTTTTgctacggtggagtgcatgacgtaactcgcg
cggcaccAAACTCACCTTCTGTTGGCTAGTCATATTGggtgttttggcgt
taccaccctcgaagcagcgggcgcctttatcattccgcaactctgtcctc
cattttaaatgaaatgagttaacaatagatccaaaagggcgccctcaTCA
AGGAAGATCATTTGCtctggtctccggctttgggaactAGTATTAGTaat
gttttcgattgttttttatggaaaatggtaagaaacttaagtttacaagt
atCACTTAGTTTTTACTGGCTtttagaatggcaggatcctggatggtttc
cctaactgaacaAAGAGAAGCCAAATTCTTAGGGTACTGTAACAAGTTTG
ATTTATTcgattaaaaaatcaatttgatcAGTTTGATTTTTAATCTGTTC
TGGCTGAATTGGgcaaatattttcccaaaaattccCTCATTAtagccaga
caatctcaatcaaacaaatcaaactaatcaaatgCAATGTCCAAAATAGT
GTTTGATCAATGCAGCTTCAGTTGATGTTGTTTCCAATATGTCTTTGGAA
CCAAAATAACGATCAGAACAACAGTACTGGCACTGCTTCCAAAATGCAAT
CACACTAATCAcagaattcaattttttgttaatttattaTTTCCTTTTTA
TTCTCAATCAGATTAAAGTTTATATACAGTTTAACATCATGAGATTTCGC
TTTTGCGGAGATCTAGATTGCCCAGACTGGGTTCTTGTTGAAATTATAAC
TTTATCAAAAATGAGTTCAGTCAAAATGAAGCTCTTTTGTATGCAAGTGA
TGTCACATTTGCTTGGAGGAAAAATTGATTATGCTAAAGTTGAAAAGCTC
ACGTCTGATGCAAAGTATACGGAAAAAGATATGAAAGCAACTATTGCTGC
TGttgactttattttttcaaGTGCTGGAAAATATGCTGTTGATGGAGATT
CATTATCAAATGAACTTCAACAGCTTGGTCTACCAAAAGAGTTAGCTACT
GCCTTGTGTAAAGTTTACGGTGATAAGAAGGATCTTTTGCAAGATGCACT
GAAAGCAAAAAGTATGAGAATATCACGACTCAATTCTGTTGATTGGAGAG
TAGACTTTGTTCTTGGGTCAtcttttataaatgaaaatgatacAACTAAA
GCAGAAGTGCAACTCAGAATATCAAAGCAAGAAgaccaagaagaaaaaac
aatatCTTTTACAGCCTCTGAAGAAAAGTTCCAAACACTAGCTGCAGAGT
TGAGAGATGTCTATAAATTGATGGAGAATTTAACATAGATTTATCAACTA
TTTGGGAGTTTTAAAATAGGTCCTTCTTACATaattaatttatatttttt
tgtatttctgtTTAAACAATTTAGAAATTAGAGGTATGCATAACATGTTG
ATTTTGAAgtgttgattttgaaattacACAGCATTATATATGGGCCAAAA
ACACACCCCTTTTTGgtaattcgaattttcttttttatatagatttcttt
ttttattttccaatgaAGTATGAAAGATTGTTTTAGTTCTATGAAAGCAG
TTAAATCCCTTCATCAAATATATATTAAATCATTTCAAAGTTTAATTGCC
cttcattggttgatttttccTCAAACTTTTATGAAAAGAAGAGTATTTTT
GCCAGAGCATTTTTATACCTTTTTTGTGTTCGGTTTACTTGGAGACTACT
TTCCTTTGTAGTGAAATATCAGCAGGACAAAAGTGCTCTATCTGTCTAGA
ATATGGCCTGTTTTGCACCTAAaataatctttttattttgttgattccaa
gaagaaaattttgactttaataGAAACCATGTTACCTAATGTAAAGAATA
AATTTTAATCTGCAAACAACAAGTTTACATTGTAATTGTTATATAGACAT
TTATAGAATCGtatttttttgataatgaaaAGCAAGTTATTTCGATTGCA
ACTTTTTTAGTTCACCTCTTTGACCATAACTGACAAGGATGTCCAGCCAT
CCTTATTtaggatttttttatatttttgatagattgaattttttacaaat
taatccTGGTGTTCACATCAATTCTGATACTATTTATCTTCTTCGCTGCT
TCCTTCTTAGAATATTACATTTCACATATGTTTATCTTTATTTAGATGGA
ATCAGAAAATAATACAGAAAACCAGGGGCCAGCTCTTGTTGATTTAGACG
AGAAAAAAGTGAATGTGGCCGTGCGATTCTTGAACAACTTAAATGTTCGG
GATACACCGAAAGaccataaaatgaaatttttaatggCAAAAGGATTGAA
CGAACAAGAGATTGAATTAGCAATGAAAAAAGCTGAAGCAATCCGTGAAA
ACACTAAAGAAAAGGAAGAGGAAGAATGGACTTTTTGGGATTATTTCAAA
GGCATTGTTCTCAGTGCTGGTATCTTGTCGTCAGCTAATTATGCATACAA
AGCATATGTATTGCCTTATGTTGCTCATGAGATCAAAGATGACCAAAGGA
TTGAAACATTGAAAGACTCCGTCCAAGTCTTAAAAGATGACTTGAAACAG
AAAACATATGAGTTTACATGCACCTTAAAGTCCATACAAAGTTTATTGGA
AGATCAAAAGAAATTATTGGGCAATATTGAAAAAGAACTTGGAAAGAAGC
AAAATGATGATGTCTCTATGACTAATATAAAAACTGATTTGGCCTCCCTT
AAAAGTATGATGTTGAGTAAAGACAAGTTCCCAGCTGCTCCGTTTGTTTC
AACTTCCGGTCCAAGCAGTGCTGAAATTCCTGCCTGGCAAAAGGCTAAGG
ATGAGAAAAACAGCGACCTTGTTTTGGAAGATGGAGAAGAGAAAAGCGAA
GTCAAAATTACGGAAGAAAACAGTGATGAATAGAACTACGAatgcaataa
ttttttttttttttacttggttGATTGCAATTGCAAAATCGATATCAGTG
TTAGCGTATTAGCGTTATCTTGATGACAAATAATGAGTTATCTGTGATGA
CTCTAGGAATCTGATTAAAACTACAAGAAGCTTTTACACCTTAGCCGACA
GACGCCCTTACGactttttaaattctttattaAAAGAGGCTATAAAGGAG
TTTCTAATGTGCTTAAAGTTAGTTTTTTAACATATCTTGTTTTTGCCCGA
ATATTAGTGGAGAGATGAAAAGATATCGAAAaattagccattttttattt
tgattgacattttgcaaaaaGAAATGGCTGACGACAAGAAAATATTGCAA
AGCTCATTTTTCGAACAAATTGATGTACACAAAGTTCACAATCTGTGAAA
CAAActtctgtttttgtttcgagTAGATTCTTTGTGTACATGTCAAAAGA
TTTAACTAAGTATCTAAAAATACGGTTCCAGTAAATTCTATTTCTTTTAA
GTTTAAGTATGTTTATCCTAATGGGATATTGTACTATTCatgatttaaat
attttcaatttctttttgcgTATGattcttttgtagatttttgggAAATA
TTGAGTCTGATTGAGTTATActtaatcatgtaaagcattcattttttatc
attaaaaatcatatctattattttttacaaattttcaatcgagaTGAAAT
ATTATATTACAGTTTACAGTTAACAGTTTACTTTGTACCTAGAGAAAGAC
TACTACTATTACTAAGAATTTCTGTTATACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021805-exon-sc0000395-1491911889:172109..172133 | TCONS_00021805-exon-sc0000395-1491911889:172109..172133 | Clytia hemisphaerica | exon |
| TCONS_00021805-exon-sc0000395-1510915933:172109..172133 | TCONS_00021805-exon-sc0000395-1510915933:172109..172133 | Clytia hemisphaerica | exon |
| TCONS_00021805-exon-sc0000395-1575043694:172109..172133 | TCONS_00021805-exon-sc0000395-1575043694:172109..172133 | Clytia hemisphaerica | exon |
| TCONS_00021805-exon-sc0000395-1491911889:179754..181291 | TCONS_00021805-exon-sc0000395-1491911889:179754..181291 | Clytia hemisphaerica | exon |
| TCONS_00021805-exon-sc0000395-1510915933:179754..181291 | TCONS_00021805-exon-sc0000395-1510915933:179754..181291 | Clytia hemisphaerica | exon |
| TCONS_00021805-exon-sc0000395-1575043694:179754..181291 | TCONS_00021805-exon-sc0000395-1575043694:179754..181291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:172109..181291 + |
Blast
The following BLAST results are available for this feature:
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