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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021806 ID=TCONS_00021806|Name=TCONS_00021806|organism=Clytia hemisphaerica|type=transcript|length=3363bp
attcttataattGCGAAATGTTGTTTGTGCTTTTgctacggtggagtgca
tgacgtaactcgcgcggcaccAAACTCACCTTCTGTTGGCTAGTCATATT
Gggtgttttggcgttaccaccctcgaagcagcgggcgcctttatcattcc
gcaactctgtcctccattttaaatgaaatgagttaacaatagatccaaaa
gggcgccctcaTCAAGGAAGATCATTTGCtctggtctccggctttgggaa
ctAGTATTAGTaatgttttcgattgttttttatggaaaatggtaagaaac
ttaagtttacaagtatCACTTAGTTTTTACTGGCTtttagaatggcagga
tcctggatggtttccctaactgaacaAAGAGAAGCCAAATTCTTAGGGTA
CTGTAACAAGTTTGATTTATTcgattaaaaaatcaatttgatcAGTTTGA
TTTTTAATCTGTTCTGGCTGAATTGGgcaaatattttcccaaaaattccC
TCATTAtagccagacaatctcaatcaaacaaatcaaactaatcaaatgCA
ATGTCCAAAATAGTGTTTGATCAATGCAGCTTCAGTTGATGTTGTTTCCA
ATATGTCTTTGGAACCAAAATAACGATCAGAACAACAGTACTGGCACTGC
TTCCAAAATGCAATCACACTAATCAcagaattcaattttttgttaattta
ttaTTTCCTTTTTATTCTCAATCAGATTAAAGTTTATATACAGTTTAACA
TCATGAGATTTCGCTTTTGCGGAGATCTAGATTGCCCAGACTGGGTTCTT
GTTGAAATTATAACTTTATCAAAAATGAGTTCAGTCAAAATGAAGCTCTT
TTGTATGCAAGTGATGTCACATTTGCTTGGAGGAAAAATTGATTATGCTA
AAGTTGAAAAGCTCACGTCTGATGCAAAGTATACGGAAAAAGATATGAAA
GCAACTATTGCTGCTGttgactttattttttcaaGTGCTGGAAAATATGC
TGTTGATGGAGATTCATTATCAAATGAACTTCAACAGCTTGGTCTACCAA
AAGAGTTAGCTACTGCCTTGTGTAAAGTTTACGGTGATAAGAAGGATCTT
TTGCAAGATGCACTGAAAGCAAAAAGTATGAGAATATCACGACTCAATTC
TGTTGATTGGAGAGTAGACTTTGTTCTTGGGTCAtcttttataaatgaaa
atgatacAACTAAAGCAGAAGTGCAACTCAGAATATCAAAGCAAGAAgac
caagaagaaaaaacaatatCTTTTACAGCCTCTGAAGAAAAGTTCCAAAC
ACTAGCTGCAGAGTTGAGAGATGTCTATAAATTGATGGAGAATTTAACAT
AGATTTATCAACTATTTGGGAGTTTTAAAATAGGTCCTTCTTACATaatt
aatttatatttttttgtatttctgtTTAAACAATTTAGAAATTAGAGGTA
TGCATAACATGTTGATTTTGAAgtgttgattttgaaattacACAGCATTA
TATATGGGCCAAAAACACACCCCTTTTTGgtaattcgaattttctttttt
atatagatttctttttttattttccaatgaAGTATGAAAGATTGTTTTAG
TTCTATGAAAGCAGTTAAATCCCTTCATCAAATATATATTAAATCATTTC
AAAGTTTAATTGCCcttcattggttgatttttccTCAAACTTTTATGAAA
AGAAGAGTATTTTTGCCAGAGCATTTTTATACCTTTTTTGTGTTCGGTTT
ACTTGGAGACTACTTTCCTTTGTAGTGAAATATCAGCAGGACAAAAGTGC
TCTATCTGTCTAGAATATGGCCTGTTTTGCACCTAAaataatctttttat
tttgttgattccaagaagaaaattttgactttaataGAAACCATGTTACC
TAATGTAAAGAATAAATTTTAATCTGCAAACAACAAGTTTACATTGTAAT
TGTTATATAGACATTTATAGAATCGtatttttttgataatgaaaAGCAAG
TTATTTCGATTGCAACTTTTTTAGTTCACCTCTTTGACCATAACTGACAA
GGATGTCCAGCCATCCTTATTtaggatttttttatatttttgatagattg
aattttttacaaattaatccTGGTGTTCACATCAATTCTGATACTATTTA
TCTTCTTCGCTGCTTCCTTCTTAGAATATTACATTTCACATATGTTTATC
TTTATTTAGATGGAATCAGAAAATAATACAGAAAACCAGGGGCCAGCTCT
TGTTGATTTAGACGAGAAAAAAGTGAATGTGGCCGTGCGATTCTTGAACA
ACTTAAATGTTCGGGATACACCGAAAGaccataaaatgaaatttttaatg
gCAAAAGGATTGAACGAACAAGAGATTGAATTAGCAATGAAAAAAGCTGA
AGCAATCCGTGAAAACACTAAAGAAAAGGAAGAGGAAGAATGGACTTTTT
GGGATTATTTCAAAGGCATTGTTCTCAGTGCTGGTATCTTGTCGTCAGCT
AATTATGCATACAAAGCATATGTATTGCCTTATGTTGCTCATGAGATCAA
AGATGACCAAAGGATTGAAACATTGAAAGACTCCGTCCAAGTCTTAAAAG
ATGACTTGAAACAGAAAACATATGAGTTTACATGCACCTTAAAGTCCATA
CAAAGTTTATTGGAAGATCAAAAGAAATTATTGGGCAATATTGAAAAAGA
ACTTGGAAAGAAGCAAAATGATGATGTCTCTATGACTAATATAAAAACTG
ATTTGGCCTCCCTTAAAAGTATGATGTTGAGTAAAGACAAGTTCCCAGCT
GCTCCGTTTGTTTCAACTTCCGGTCCAAGCAGTGCTGAAATTCCTGCCTG
GCAAAAGGCTAAGGATGAGAAAAACAGCGACCTTGTTTTGGAAGATGGAG
AAGAGAAAAGCGAAGTCAAAATTACGGAAGAAAACAGTGATGAATAGAAC
TACGAatgcaataattttttttttttttacttggttGATTGCAATTGCAA
AATCGATATCAGTGTTAGCGTATTAGCGTTATCTTGATGACAAATAATGA
GTTATCTGTGATGACTCTAGGAATCTGATTAAAACTACAAGAAGCTTTTA
CACCTTAGCCGACAGACGCCCTTACGactttttaaattctttattaAAAG
AGGCTATAAAGGAGTTTCTAATGTGCTTAAAGTTAGTTTTTTAACATATC
TTGTTTTTGCCCGAATATTAGTGGAGAGATGAAAAGATATCGAAAaatta
gccattttttattttgattgacattttgcaaaaaGAAATGGCTGACGACA
AGAAAATATTGCAAAGCTCATTTTTCGAACAAATTGATGTACACAAAGTT
CACAATCTGTGAA Run BLAST on NCBI transcript from alignment at sc0000395:177545..180907+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021806 ID=TCONS_00021806|Name=TCONS_00021806|organism=Clytia hemisphaerica|type=transcript|length=3363bp|location=Sequence derived from alignment at sc0000395:177545..180907+ (Clytia hemisphaerica)
attcttataattGCGAAATGTTGTTTGTGCTTTTgctacggtggagtgca
tgacgtaactcgcgcggcaccAAACTCACCTTCTGTTGGCTAGTCATATT
Gggtgttttggcgttaccaccctcgaagcagcgggcgcctttatcattcc
gcaactctgtcctccattttaaatgaaatgagttaacaatagatccaaaa
gggcgccctcaTCAAGGAAGATCATTTGCtctggtctccggctttgggaa
ctAGTATTAGTaatgttttcgattgttttttatggaaaatggtaagaaac
ttaagtttacaagtatCACTTAGTTTTTACTGGCTtttagaatggcagga
tcctggatggtttccctaactgaacaAAGAGAAGCCAAATTCTTAGGGTA
CTGTAACAAGTTTGATTTATTcgattaaaaaatcaatttgatcAGTTTGA
TTTTTAATCTGTTCTGGCTGAATTGGgcaaatattttcccaaaaattccC
TCATTAtagccagacaatctcaatcaaacaaatcaaactaatcaaatgCA
ATGTCCAAAATAGTGTTTGATCAATGCAGCTTCAGTTGATGTTGTTTCCA
ATATGTCTTTGGAACCAAAATAACGATCAGAACAACAGTACTGGCACTGC
TTCCAAAATGCAATCACACTAATCAcagaattcaattttttgttaattta
ttaTTTCCTTTTTATTCTCAATCAGATTAAAGTTTATATACAGTTTAACA
TCATGAGATTTCGCTTTTGCGGAGATCTAGATTGCCCAGACTGGGTTCTT
GTTGAAATTATAACTTTATCAAAAATGAGTTCAGTCAAAATGAAGCTCTT
TTGTATGCAAGTGATGTCACATTTGCTTGGAGGAAAAATTGATTATGCTA
AAGTTGAAAAGCTCACGTCTGATGCAAAGTATACGGAAAAAGATATGAAA
GCAACTATTGCTGCTGttgactttattttttcaaGTGCTGGAAAATATGC
TGTTGATGGAGATTCATTATCAAATGAACTTCAACAGCTTGGTCTACCAA
AAGAGTTAGCTACTGCCTTGTGTAAAGTTTACGGTGATAAGAAGGATCTT
TTGCAAGATGCACTGAAAGCAAAAAGTATGAGAATATCACGACTCAATTC
TGTTGATTGGAGAGTAGACTTTGTTCTTGGGTCAtcttttataaatgaaa
atgatacAACTAAAGCAGAAGTGCAACTCAGAATATCAAAGCAAGAAgac
caagaagaaaaaacaatatCTTTTACAGCCTCTGAAGAAAAGTTCCAAAC
ACTAGCTGCAGAGTTGAGAGATGTCTATAAATTGATGGAGAATTTAACAT
AGATTTATCAACTATTTGGGAGTTTTAAAATAGGTCCTTCTTACATaatt
aatttatatttttttgtatttctgtTTAAACAATTTAGAAATTAGAGGTA
TGCATAACATGTTGATTTTGAAgtgttgattttgaaattacACAGCATTA
TATATGGGCCAAAAACACACCCCTTTTTGgtaattcgaattttctttttt
atatagatttctttttttattttccaatgaAGTATGAAAGATTGTTTTAG
TTCTATGAAAGCAGTTAAATCCCTTCATCAAATATATATTAAATCATTTC
AAAGTTTAATTGCCcttcattggttgatttttccTCAAACTTTTATGAAA
AGAAGAGTATTTTTGCCAGAGCATTTTTATACCTTTTTTGTGTTCGGTTT
ACTTGGAGACTACTTTCCTTTGTAGTGAAATATCAGCAGGACAAAAGTGC
TCTATCTGTCTAGAATATGGCCTGTTTTGCACCTAAaataatctttttat
tttgttgattccaagaagaaaattttgactttaataGAAACCATGTTACC
TAATGTAAAGAATAAATTTTAATCTGCAAACAACAAGTTTACATTGTAAT
TGTTATATAGACATTTATAGAATCGtatttttttgataatgaaaAGCAAG
TTATTTCGATTGCAACTTTTTTAGTTCACCTCTTTGACCATAACTGACAA
GGATGTCCAGCCATCCTTATTtaggatttttttatatttttgatagattg
aattttttacaaattaatccTGGTGTTCACATCAATTCTGATACTATTTA
TCTTCTTCGCTGCTTCCTTCTTAGAATATTACATTTCACATATGTTTATC
TTTATTTAGATGGAATCAGAAAATAATACAGAAAACCAGGGGCCAGCTCT
TGTTGATTTAGACGAGAAAAAAGTGAATGTGGCCGTGCGATTCTTGAACA
ACTTAAATGTTCGGGATACACCGAAAGaccataaaatgaaatttttaatg
gCAAAAGGATTGAACGAACAAGAGATTGAATTAGCAATGAAAAAAGCTGA
AGCAATCCGTGAAAACACTAAAGAAAAGGAAGAGGAAGAATGGACTTTTT
GGGATTATTTCAAAGGCATTGTTCTCAGTGCTGGTATCTTGTCGTCAGCT
AATTATGCATACAAAGCATATGTATTGCCTTATGTTGCTCATGAGATCAA
AGATGACCAAAGGATTGAAACATTGAAAGACTCCGTCCAAGTCTTAAAAG
ATGACTTGAAACAGAAAACATATGAGTTTACATGCACCTTAAAGTCCATA
CAAAGTTTATTGGAAGATCAAAAGAAATTATTGGGCAATATTGAAAAAGA
ACTTGGAAAGAAGCAAAATGATGATGTCTCTATGACTAATATAAAAACTG
ATTTGGCCTCCCTTAAAAGTATGATGTTGAGTAAAGACAAGTTCCCAGCT
GCTCCGTTTGTTTCAACTTCCGGTCCAAGCAGTGCTGAAATTCCTGCCTG
GCAAAAGGCTAAGGATGAGAAAAACAGCGACCTTGTTTTGGAAGATGGAG
AAGAGAAAAGCGAAGTCAAAATTACGGAAGAAAACAGTGATGAATAGAAC
TACGAatgcaataattttttttttttttacttggttGATTGCAATTGCAA
AATCGATATCAGTGTTAGCGTATTAGCGTTATCTTGATGACAAATAATGA
GTTATCTGTGATGACTCTAGGAATCTGATTAAAACTACAAGAAGCTTTTA
CACCTTAGCCGACAGACGCCCTTACGactttttaaattctttattaAAAG
AGGCTATAAAGGAGTTTCTAATGTGCTTAAAGTTAGTTTTTTAACATATC
TTGTTTTTGCCCGAATATTAGTGGAGAGATGAAAAGATATCGAAAaatta
gccattttttattttgattgacattttgcaaaaaGAAATGGCTGACGACA
AGAAAATATTGCAAAGCTCATTTTTCGAACAAATTGATGTACACAAAGTT
CACAATCTGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021806-exon-sc0000395-1491911889:177545..180907 | TCONS_00021806-exon-sc0000395-1491911889:177545..180907 | Clytia hemisphaerica | exon |
| TCONS_00021806-exon-sc0000395-1510915933:177545..180907 | TCONS_00021806-exon-sc0000395-1510915933:177545..180907 | Clytia hemisphaerica | exon |
| TCONS_00021806-exon-sc0000395-1575043694:177545..180907 | TCONS_00021806-exon-sc0000395-1575043694:177545..180907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:177545..180907 + |
Blast
BLAST of TCONS_00021806 vs. Swiss-Prot (Human)
Match: COMD4 (COMM domain-containing protein 4 OS=Homo sapiens GN=COMMD4 PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.537e-60 Identity = 102/198 (51.52%), Postives = 138/198 (69.70%), Query Frame = 3
Query: 753 MRFRFCGDLDCPDWVLVEIITLSKMSSVKMKLFCMQVMSHLLGGKIDYAKVEKLTSDAKYTEKDMKATIAAVDFIFSSAGKYAVDGDSLSNELQQLGLPKELATALCKVYGXXXXXXXXXXXXXSMRISRLNSVDWRVDFVLGSSFINENDTTKAEVQLRISKQEDQEEKTISFTASEEKFQTLAAELRDVYKLMENL 1346
MRFRFCGDLDCPDWVL EI TL+KMSSVK++L C QV+ LLG IDY K+ KLT+DAK+ D+KAT+A + FI SSA K++VDG+SLS+ELQQLGLPKE A +LC+ Y +K+ LQ L+ S+R++RL V WRVD+ L SS + + ++L ++ + ++ + S +KFQ L AEL+ LM +L
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLMSSL 198
The following BLAST results are available for this feature:
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