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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021817 ID=TCONS_00021817|Name=TCONS_00021817|organism=Clytia hemisphaerica|type=transcript|length=1586bp
CAACACGTGATCAAGATTACACCATACAGAAACTGCTATTTGAAAGTTTA
CCCCACGATAATTACAACCACAACCGCCCTTTCATCCACCACAACACCAA
AAAGTCCGCCAACAACATCAACCATTTCAACAACAGAGCTCTTAACTTCT
AAAAGGTCAACCACCTCAACTGTTGCAACAAAATCGTCAACAAAATCCAT
TACAACGGCAAAAACCTTCATTCCACACATGAATTCAACCAAAAAAACTA
TAAACGGTACTGCGCTTTctacaacaaaagaaacaaaatattcaacaaat
gTTCCACTAAACACAACAACAACCTCAACATCTAAACCAACAACAGCTAC
TTCAAACCAACCTTCGACGCTATTTACAACAAATCATCCCGCGAACATTT
CCAACACATCAGAAGGCAATTCAACACTTTTAACAACTCCTtctacaaca
acaaaaaacattggaaaaacatcaaattcaagTGTAAAAACAACAACGAA
AACAACAGCGAATTCAAAAGCTTCTTCATCAAGCACATTTATGAAATACT
CGACAATGATCATTCCGAAGTCAACAACAAGCTCCCATCTCTCCACAGAG
GTGACAACCACGGGTGAACGAATCTCTACAGTTTCAACTGTCAGTAAAAC
AACTACAAAAGGCAAAGCCAACCAGAAATCCCCAACCATCTATTCAGCGG
ATGAAGAACATGAAGATGATTTGGATGACGAAGAAAGAGACCCTCCGCAT
TACCTGGATGAAGACATGAATACCAATCAAGCTAAATCTCGAGATGCTAA
TTCAGAAAATTTCATAAAGGAAGCCATTATTATTTCTGCCTCGCTTGTTG
CTGTATTTATCATCATTGTCACTATATACATTTTGGTCAAACGAGGCATC
ACTGGGAAACGGAGGAAACCATCAAACAAGCTCCGTGAAGGAGATGTGTT
ATTAAAGAACCGTAAGATGGAGATCGATATTCAAATGGATCTCCATACCC
CTGATCATCTCCCTCCTCCTGAGGGCTTTTGATGTGATAAGAATTTAGCA
AACTCGTATCCAGTCCTATAGCTCGTGGTGGTACAAGTGGTACAAGTTGC
TCTGAGTACGAGATTGAATTTAGCTGATTTTGGAGATTGGAAATTGATTC
GTGTCCGTTTCTGGAAAATGATGTTTAAATTGAAAACAGAAACGAAATCA
GCTATCTGATGATATAATTTGGTCAAGCGGTGCTTAAAAAATCTCTGGTA
CGTGCTATGATCATTGTATTCAAAGTGACGCAACCGTAATCTGACCATAC
CTTTTCAAAGTACAGTGTTCTCTACCATGTCACAATCTTCATTTACAATC
TCTACAATGTTGTATATTgcgaaaaatatgaaatatttatattttggaAA
CACTAAAATTTCAGCTGTTCACGAAGATTAACAGCcaaatatcaagaaat
aaatcCGCTTTTACCTTTTTTATTTCAGTATTTTTTGTGACAATACGTCT
TACCTTAATTTTGTCCCGGTAGAGCTACAATGGGCTCTTctagaaaatgt
tcgtacatggggggtggatgATATATTTTCCGGGGT Run BLAST on NCBI transcript from alignment at sc0000395:232511..237730+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021817 ID=TCONS_00021817|Name=TCONS_00021817|organism=Clytia hemisphaerica|type=transcript|length=5220bp|location=Sequence derived from alignment at sc0000395:232511..237730+ (Clytia hemisphaerica)
CAACACGTGATCAAGATTACACCATACAGAAACTGCTATTTGAAAGGTAT
TAAGGACTTTATTCAGATTAAAGTGTGaatagttcttccgtctcaATGAA
GTGTAGAGCTAGACTTACTAATTAAcatcagttttactcaaaagctTCTT
TTACAGTAGTAGAAAAAAACTACCTAGAAGTTTGTTTACTATTCCAACTT
CCTGTAcggctttttttcttctttttgactttgagGCAGGATTACTTCTA
CGTTTTGTGTTAAAAGAATAATAGTGGTCTGTAAATCGAGACTAGTCTCA
ACAATGAAGTATAAAAAGAttcgtctcaaaattctgcataaaatgtgcta
atttgctgtgAAAAATCAATTCTCCGTCTCAGACAAAAATCTCGCTTTTA
ATATATCCTCATGATCTTAGGAGATGATAAAAGTTTTATAAATCGTTGAC
CATGAGTACTAGCACAAGCTTGTTCGAGGATTCCAGAAGTCTATCGTTGA
CTCCTTTTATCAATTTAAAAGAGCTttcacttgaaattttttttttccgt
tAAGGTCTTATCTTTTAATCAGataaaattattcttgtttTAGTTTACCC
CACGATAATTACAACCACAACCGCCCTTTCATCCACCACAACACCAAAAA
GTCCGCCAACAACATCAACCATTTCAACAACAGAGCTCTTAACTTCTAAA
AGGTCAACCACCTCAACTGTTGCAACAAAATCGTCAACAAAATCCATTAC
AACGGCAAAAACCTTCATTCCACACATGAATTCAACCAAAAAAACTATAA
ACGGTACTGCGCTTTctacaacaaaagaaacaaaatattcaacaaatgTT
CCACTAAACACAACAACAACCTCAACATCTAAACCAACAACAGCTACTTC
AAACCAACCTTCGACGCTATTTACAACAAATCATCCCGCGAACATTTCCA
ACACATCAGAAGGCAATTCAACACTTTTAACAACTCCTtctacaacaaca
aaaaacattggaaaaacatcaaattcaagTGTAAAAACAACAACGAAAAC
AACAGCGAATTCAAAAGCTTCTTCATCAAGCACATTTATGAAATACTCGA
CAATGATCATTCCGAAGTCAACAACAAGCTCCCATCTCTCCACAGAGGTG
ACAACCACGGGTGAACGAATCTCTACAGTTTCAACTGTCAGTAAAACAAC
TACAAAAGGCAAAGCCAACCAGAAATCCCCAACCATCTATTCAggtattt
caatattttatgaaGAGAGATGATTTCAATCAATTTCGCTATTTTGACAT
GTCCTTTGTTTTGCTAACATTATCTACACCAAACTGcttgtacatgtttt
ttataagcgttGCTCTTATANATTTTTTTTTTCCGTTAAGGTCTTATCTT
TTAATCAGataaaattattcttgtttTAGTTTACCCCACGATAATTACAA
CCACAACCGCCCTTTCATCCACCACAACACCAAAAAGTCCGCCAACAACA
TCAACCATTTCAACAACAGAGCTCTTAACTTCTAAAAGGTCAACCACCTC
AACTGTTGCAACAAAATCGTCAACAAAATCCATTACAACGGCAAAAACCT
TCATTCCACACATGAATTCAACCAAAAAAACTATAAACGGTACTGCGCTT
TctacaacaaaagaaacaaaatattcaacaaatgTTCCACTAAACACAAC
AACAACCTCAACATCTAAACCAACAACAGCTACTTCAAACCAACCTTCGA
CGCTATTTACAACAAATCATCCCGCGAACATTTCCAACACATCAGAAGGC
AATTCAACACTTTTAACAACTCCTtctacaacaacaaaaaacattggaaa
aacatcaaattcaagTGTAAAAACAACAACGAAAACAACAGCGAATTCAA
AAGCTTCTTCATCAAGCACATTTATGAAATACTCGACAATGATCATTCCG
AAGTCAACAACAAGCTCCCATCTCTCCACAGAGGTGACAACCACGGGTGA
ACGAATCTCTACAGTTTCAACTGTCAGTAAAACAACTACAAAAGGCAAAG
CCAACCAGAAATCCCCAACCATCTATTCAGGtagttttttcaatatttta
tgaaGAGAGATGATCAATTTCGCTATTTTGACATGTCCTTTGTTTTGCTA
ACATTATCTACACCAAACTGcttgtacatgttttttataagcgttGCTCT
TATAATCATATTTAGGCTCAGATATTGCAAACATTTAAAATCATATGCTA
AGcattaaaaacgaaaaaaaatattttcctgatTCTGGCTGTATTTGACA
GTCTTGACAgggattttacggattttcgtGGAATTTCcccctaaaatttt
gctgaggATAGAAGCATTATTCAAGCATTTTTAGGTAATGTCAATCTCTC
GATCTAAGCATCTTTGAGccagtttttggatttttgtatgcttataaaaa
gtaaatcaaaacccATCAGACTAGGTACTGGAGAGTTCGTAAGGATACTC
GAAATTGTTCAGCATTCATTTATTCCccaaattttaaacaaacggATCAA
ACATGGGTCCATTTTTCGAGCCTCGCCGTCACAGCCCCGTCGATCTGCCA
GCATAGCACATCCCTGGGTATATGAAACGCCTGAAAGTTACTTGTAAGTC
AAAAACAAATACTATTTCTTCATTATCCTTTTCATTTCATAGCGGATGAA
GAACATGAAGATGATTTGGATGACGAAGAAAGAGACCCTCCGCATTACCT
GGATGAAGACATGAATACCAATCAAGCTAAATGTAAGTTCAATATCGTTC
AATCGGTTCTCTAGACAGAGAAAAAAGTACCTACTgtaatcatagtataa
gaaagccgcggctggaatgataacatctgaatttctgttgttctatctct
gtcgtatttgatgactatttgttgatcaagaaatcagtaatgtagcatct
ttaatggtagattctattggtttgtcgttaatacttaattcttagtgcgt
tttagacattaatgatatacccttgataatacacttgcattataaaatca
ttgtaaaggaaagatcaacaataagaagcACAAAATGgatgggctgaaag
aactcaaaaattaataaagtgcctcggatgccttcgcaatatttcagtaa
aatctttttagaaatcaatgaaaaagtacatcatgataatactgtgaaaa
tttcaagattgcaccttcaaaattcatcattcaaactgacaggaaagttg
tcatcttgaatatagttcttataatttcaattttggcgaaaaactattgt
ttccacaaagtACCCCTAAAATATGTCCAAAATTagttcaagtgttctat
tgggtacagattcaaagatatctagcaataaaattttttttaaaggaaaa
taagagaaaaatttgaaaaaccatctaccaataataaactgagcatcttg
atgttcttataaagctcggagacagagatagaacagcaaAAGACAATGTC
GTACAAATTCCAGCCgtggctttcttatactatgctgtaataatgggctc
ttccagaaaaagtccGTTCATAtaggggtggaggatgaattgtccagggg
tattgaaaaaatgccaaaaaattgcaatgtcgaggggtaattttttgtgt
ccacggggttgatttgatgtttgtccaggagtataacccgtgtccagggg
gtcaaaaatcaaaatgtccaggggtaaatcatgaaaaaaataatatatct
tccaccccccatgaacggattttttctggaagagcccaatggagaaaaat
aataacaataatatttgaaaatgaaaataaaaatgaagagaATAAAACTT
TTGCTGCTAtcaacttcatttttggtaaaGAGGTGATTTGAAGCCTCCTG
ATTTCaatataagttttttttttccaaaactgtCAACGGTAATCACAGTA
TAGGTCGTTGGAATCGAAAAGCCCCATTTCTactacaccccttctcacag
acccggtaggattttttcagccagtgcgataaaaataacggactgaaact
cgatggggattgatgttcccatattttttatagcTTTTCATATGTTTCTA
TGGGATTTAAATTCGTTTgttttcaagccagaaaattcagtggggatgag
aaAAAAAGCATTATATTTTatagtgaggattggtttattttggttatttt
cagtTGGGACAAAAATTGGGAGTATACCACATAATAGACGACTACCGGTA
ATAGACGAATACCGGCGGAAACCCGCGGAATACCGCAATATATTTCTGAG
CTGAATCATGAAGTCTAAATTCAAAACCTCGACTGAGTTAAAATCTCTGA
AAGTAACTGACACTAGGTCTCGTTTCATCACGttaaaaagtattttcttt
ttattttgtctcTTTTTCCAGCTCGAGATGCTAATTCAGAAAATTTCATA
AAGGAAGCCATTATTATTTCTGCCTCGCTTGTTGCTGTATTTATCATCAT
TGTCACTATATACATTTTGGTCAAACGAGGCATCACTGGGAAACGGAGGA
AACCATCAAACAAGCTCCGTGAAGGAGATGTGTTATTAAAGAACCGTAAG
ATGGAGATCGATATTCAAATGGATCTCCATACCCCTGATCATCTCCCTCC
TCCTGAGGGCTTTTGATGTGATAAGAATTTAGCAAACTCGTATCCAGTCC
TATAGCTCGTGGTGGTACAAGTGGTACAAGTTGCTCTGAGTACGAGATTG
AATTTAGCTGATTTTGGAGATTGGAAATTGATTCGTGTCCGTTTCTGGAA
AATGATGTTTAAATTGAAAACAGAAACGAAATCAGCTATCTGATGATATA
ATTTGGTCAAGCGGTGCTTAAAAAATCTCTGGTACGTGCTATGATCATTG
TATTCAAAGTGACGCAACCGTAATCTGACCATACCTTTTCAAAGTACAGT
GTTCTCTACCATGTCACAATCTTCATTTACAATCTCTACAATGTTGTATA
TTgcgaaaaatatgaaatatttatattttggaAACACTAAAATTTCAGCT
GTTCACGAAGATTAACAGCcaaatatcaagaaataaatcCGCTTTTACCT
TTTTTATTTCAGTATTTTTTGTGACAATACGTCTTACCTTAATTTTGTCC
CGGTAGAGCTACAATGGGCTCTTctagaaaatgttcgtacatggggggtg
gatgATATATTTTCCGGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021817-exon-sc0000395-1491911889:232511..232556 | TCONS_00021817-exon-sc0000395-1491911889:232511..232556 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1510915933:232511..232556 | TCONS_00021817-exon-sc0000395-1510915933:232511..232556 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1575043694:232511..232556 | TCONS_00021817-exon-sc0000395-1575043694:232511..232556 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1491911889:233940..234590 | TCONS_00021817-exon-sc0000395-1491911889:233940..234590 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1510915933:233940..234590 | TCONS_00021817-exon-sc0000395-1510915933:233940..234590 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1575043694:233940..234590 | TCONS_00021817-exon-sc0000395-1575043694:233940..234590 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1491911889:235203..235292 | TCONS_00021817-exon-sc0000395-1491911889:235203..235292 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1510915933:235203..235292 | TCONS_00021817-exon-sc0000395-1510915933:235203..235292 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1575043694:235203..235292 | TCONS_00021817-exon-sc0000395-1575043694:235203..235292 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1491911889:236932..237730 | TCONS_00021817-exon-sc0000395-1491911889:236932..237730 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1510915933:236932..237730 | TCONS_00021817-exon-sc0000395-1510915933:236932..237730 | Clytia hemisphaerica | exon |
| TCONS_00021817-exon-sc0000395-1575043694:236932..237730 | TCONS_00021817-exon-sc0000395-1575043694:236932..237730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:232511..237730 + |
Blast
The following BLAST results are available for this feature:
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