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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021822 ID=TCONS_00021822|Name=TCONS_00021822|organism=Clytia hemisphaerica|type=transcript|length=2545bp
tgcagataagtcaaaatGCAATCGGCAAAAGAATGAAACTATTACAGTAA
AAAGGATACAACGTGATGTTAAGAGTTTTCTTACGAGTATAACAACCATG
AAGTTTACGGCTGCGTTGGCGGTTGGTCTCATTTGTTTTGGTTTAACCTT
CTACACGTATATATCACTCAAAAATGTGCCACATATACCTTCGAATACAA
TCGAGTCGATTCAAAGAAACCTAGAAATATTGACATCGGATCAAAAGCAC
CATGGCGAATCTGTACAAGCACTTCTCAACGGtttggaaagtttgaaaaa
taccATAAACAGGTTGAAATCATCAGCTAGGGATGAAACACCCTCAATGA
AAGAACAAGTTGGTGACGAGATAAAGCGTGCTTTGGAGGAAAACTTCAAC
AAAttcaaccaacaaaacaaagatgTTAAAATACAGGAAAACCCTGCAGA
TAAAACAATACACAAACGAGGTTTAGAGAAGCTTTCTTTAGACTTAGACG
AGGTTGAGAAATTACCAAAGCCTTTGGATTCAGAGATGAACGAACGTTGG
ATTGTGGTGACCAGCATTTTCAAACCAACAGAGGATATCAAGAAGTTGGC
AAAGATTCAAGGCTGGAAAATGGTAGTGGTTGGAGACACTAAATCACCTA
AAGAATACAAGGTGGATAATGTGGTTTTCCTCAGTATTGCCGATCAGGAA
AACTCTGGTTTCGAAACAGCAAAATATCTCACATACGGTTGTTACCAACG
TAAAAACATGGGATATCTTTACGCTATACGACACGGCGCGCGATACATCT
ACGACACAGACGACGATAATCATCCTTACGGCGGACAAGTCGTTTTTGAT
GAGATGGAGCAAACGAAATCGTACCTCATGTACGACGGTGGTTCTGAGCG
ACACTATTATAACACATTCGCACATTTCGGTCAAAGCACGTTATGGCCAC
GTGGCTTTCCATTAGATCGAATCGATAAAAATCCCATGCGTCGGTATAAG
ACATGCTCCAATACACGCCCTCTTGTACAACAGGGCGTCGTGGACGGTGA
TCCCGATTTAGACGCCATCCAACGCTTAACACGAAAAGACGCGTCAGCTA
AATTTGTTGTTTACTTCGATAAAGAAGCACCGCCCGTTGTTTTACCGCCC
AAATCGTTCGCCCCTTACAACAGTCAAAACACCTTTCAACATTATGATAT
TTTCTTTGCCTTACTCCTTCCAATCACTGTTACCTTCCGCGTCAACGATA
TTTGGAGAAGTTATATTGCACAACGTTTGGTGTGGGATATTGGCGGCCAC
CTGGCATATTTCCCGCCCAACGCCTATCAGGATCGAACTCCCCATAATTT
CTTAAAAGACTTTTACGAAGAAGACGACCTTTATAGATTAACAAATCCTT
TAACTGAATTTCTCTTAAAATGGGATTCAAAGAACAGCAATATGGTTGAG
CGACATTTTGAAATCATTAAAGAATTATATAAGCTTGATATTCTTGGACC
ACGTGATGTACGTTTAGCACGTGCTTGGGCACGTGATCTGAGAAGGATTG
GATACAAACCACCCAAAATGCAACAGTCNGTTATATAAGCTTCATATTCT
TGGACCACGTGATGTACGTTTAGCACGTGCTTGGGCACGTGATCTGAGAA
GGATTGGATACAAACCACCCAAAATGCAACAGTCACAAGTAGTATGTGAG
CAAGAATCGAAGGAGTTTTATCCGAAAGAAATGCCAACATTGATGAATCG
GATAGGACAAAAGACAGTCAATGTTATCGAGATTGCAAAAAAGATGCCAT
TGACTAAGGAAAGAGAAAGAGACtctgaaaaataaacaatcttaactGAT
ACTTGTCGTCTTAAGGTAATATTATAGGTAGAAACttttgagactttttt
ttaGTATGATTTAACCAgtaggttttctttttacacaTCATGGAATTTAC
TGACTGTCGAAATTTGTAGCCGAGTTAATTTATTATTGAAgcacatccaa
aaattttatttgatcaaATATATTCTTATATTTATCGGTCTAAATCTTTC
GAGTTTCGAATATTAAACATACCAGCTGAACAAGtcttaaacaaatgaaa
aatgaaaaatggcgatttaaaatgagaaaacatTTCGAAAATATATTATC
ATCaaccaaaaaaattaacaaagaaaaataattttaagtttgaaaaatca
tgaaaaaaaatataataataagtTTGACACACATTTTGAGATAAATACAC
ACGCAAAGTTGAACtaaatgaatttgaaaatatcttcaTTATGCTGACAT
AATCATTTCTGCTGATGGAGGGGTTGCTGGTCGTAAGATTTGGCTTatgt
tctgaaaaaaaaaaatttgaacaaaaaagtaaatcTAATTTTTTCCCATG
TGTTAAGTGGCGTTGTATTTCGTAAATACCCCTTTCGAGGTATGGGTTTT
TAAAAGTGAATAGTCTGAAGCCGgcttctcaaaaaaaaaaaaggtctGGC
AGAACAGTGGGAGTTAAATAAGAAGAGGGGTTGTTGGCGGATGGG Run BLAST on NCBI protein sequence of TCONS_00021822-protein >TCONS_00021822-protein ID=TCONS_00021822-protein|Name=TCONS_00021822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp
ADKSKCNRQKNETITVKRIQRDVKSFLTSITTMKFTAALAVGLICFGLTF
YTYISLKNVPHIPSNTIESIQRNLEILTSDQKHHGESVQALLNGLESLKN
TINRLKSSARDETPSMKEQVGDEIKRALEENFNKFNQQNKDVKIQENPAD
KTIHKRGLEKLSLDLDEVEKLPKPLDSEMNERWIVVTSIFKPTEDIKKLA
KIQGWKMVVVGDTKSPKEYKVDNVVFLSIADQENSGFETAKYLTYGCYQR
KNMGYLYAIRHGARYIYDTDDDNHPYGGQVVFDEMEQTKSYLMYDGGSER
HYYNTFAHFGQSTLWPRGFPLDRIDKNPMRRYKTCSNTRPLVQQGVVDGD
PDLDAIQRLTRKDASAKFVVYFDKEAPPVVLPPKSFAPYNSQNTFQHYDI
FFALLLPITVTFRVNDIWRSYIAQRLVWDIGGHLAYFPPNAYQDRTPHNF
LKDFYEEDDLYRLTNPLTEFLLKWDSKNSNMVERHFEIIKELYKLDILGP
RDVRLARAWARDLRRIGYKPPKMQQXVI Run BLAST on NCBI transcript from alignment at sc0000395:90779..93575- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021822 ID=TCONS_00021822|Name=TCONS_00021822|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at sc0000395:90779..93575- (Clytia hemisphaerica)
TGCAGATAAGTCAAAATGCAATCGGCAAAAGAATGAAACTATTACAGTAA
AAAGGATACAACGTGATGTTAAGAGTTTTCTTACGAGTATAACAACCATG
AAGTTTACGGCTGCGTTGGCGGTTGGTCTCATTTGTTTTGGTTTAACCTT
CTACACGTATATATCACTCAAAAATGTGCCACATATACCTTCGAATACAA
TCGAGTCGATTCAAAGAAACCTAGAAATATTGACATCGGATCAAAAGCAC
CATGGCGAATCTGTACAAGCACTTCTCAACGGTTTGGAAAGTTTGAAAAA
TACCATAAACAGGTTGAAATCATCAGCTAGGGATGAAACACCCTCAATGA
AAGAACAAGTTGGTGACGAGATAAAGCGTGCTTTGGAGGAAAACTTCAAC
AAATTCAACCAACAAAACAAAGATGTTAAAATACAGGAAAACCCTGCAGA
TAAAACAATACACAAACGAGGTTTAGAGAAGCTTTCTTTAGACTTAGACG
AGGTTGAGAAATTACCAAAGCCTTTGGATTCAGAGATGAACGAACGTTGG
ATTGTGGTGACCAGCATTTTCAAACCAACAGAGGATATCAAGAAGTTGGC
AAAGATTCAAGGCTGGAAAATGGTAGTGGTTGGAGACACTAAATCACCTA
AAGAATACAAGTAAGATATTCAAATATTTTTTGTAAGGCAGGAAATAAGG
GATAAAAGATGTGTGTACATTTTTATAAAACGTTAATGAGAAAGGAAATG
TTATTCAAAGTAATATCTCGATGGAAAGATAATTGCAAGTGGTTTGATAA
ACCTTGAAGAACTTTCTAATAGTTTATAAATAAAGATGAAAAAGTAGGAT
ATTTTGATAAGTTTTTTTTACATCTTTCGATTTTAATCTCATCCATCTAC
TTATCACCAAAGGGTGGATAATGTGGTTTTCCTCAGTATTGCCGATCAGG
AAAACTCTGGTTTCGAAACAGCAAAATATCTCACATACGGTTGTTACCAA
CGTAAAAACATGGGATATCTTTACGCTATACGACACGGCGCGCGATACAT
CTACGACACAGACGACGATAATCATCCTTACGGCGGACAAGTCGTTTTTG
ATGAGATGGAGCAAACGAAATCGTACCTCATGTACGACGGTGGTTCTGAG
CGACACTATTATAACACATTCGCACATTTCGGTCAAAGCACGTTATGGCC
ACGTGGCTTTCCATTAGATCGAATCGATAAAAATCCCATGCGTCGGTATA
AGACATGCTCCAATACACGCCCTCTTGTACAACAGGGCGTCGTGGACGGT
GATCCCGATTTAGACGCCATCCAACGCTTAACACGAAAAGACGCGTCAGC
TAAATTTGTTGTTTACTTCGATAAAGAAGCACCGCCCGTTGTTTTACCGC
CCAAATCGTTCGCCCCTTACAACAGTCAAAACACCTTTCAACATTATGAT
ATTTTCTTTGCCTTACTCCTTCCAATCACTGTTACCTTCCGCGTCAACGA
TATTTGGAGAAGTTATATTGCACAACGTTTGGTGTGGGATATTGGCGGCC
ACCTGGCATATTTCCCGCCCAACGCCTATCAGGATCGAACTCCCCATAAT
TTCTTAAAAGACTTTTACGAAGAAGACGACCTTTATAGATTAACAAATCC
TTTAACTGAATTTCTCTTAAAATGGGATTCAAAGAACAGCAATATGGTTG
AGCGACATTTTGAAATCATTAAAGAATTATATAAGCTTGATATTCTTGGA
CCACGTGATGTACGTTTAGCACGTGCTTGGGCACGTGATCTGAGAAGGAT
TGGATACAAACCACCCAAAATGCAACAGTCNGTTATATAAGCTTCATATT
CTTGGACCACGTGATGTACGTTTAGCACGTGCTTGGGCACGTGATCTGAG
AAGGATTGGATACAAACCACCCAAAATGCAACAGTCACAAGTAGTATGTG
AGCAAGAATCGAAGGAGTTTTATCCGAAAGAAATGCCAACATTGATGAAT
CGGATAGGACAAAAGACAGTCAATGTTATCGAGATTGCAAAAAAGATGCC
ATTGACTAAGGAAAGAGAAAGAGACTCTGAAAAATAAACAATCTTAACTG
ATACTTGTCGTCTTAAGGTAATATTATAGGTAGAAACTTTTGAGACTTTT
TTTTAGTATGATTTAACCAGTAGGTTTTCTTTTTACACATCATGGAATTT
ACTGACTGTCGAAATTTGTAGCCGAGTTAATTTATTATTGAAGCACATCC
AAAAATTTTATTTGATCAAATATATTCTTATATTTATCGGTCTAAATCTT
TCGAGTTTCGAATATTAAACATACCAGCTGAACAAGTCTTAAACAAATGA
AAAATGAAAAATGGCGATTTAAAATGAGAAAACATTTCGAAAATATATTA
TCATCAACCAAAAAAATTAACAAAGAAAAATAATTTTAAGTTTGAAAAAT
CATGAAAAAAAATATAATAATAAGTTTGACACACATTTTGAGATAAATAC
ACACGCAAAGTTGAACTAAATGAATTTGAAAATATCTTCATTATGCTGAC
ATAATCATTTCTGCTGATGGAGGGGTTGCTGGTCGTAAGATTTGGCTTAT
GTTCTGAAAAAAAAAAATTTGAACAAAAAAGTAAATCTAATTTTTTCCCA
TGTGTTAAGTGGCGTTGTATTTCGTAAATACCCCTTTCGAGGTATGGGTT
TTTAAAAGTGAATAGTCTGAAGCCGGCTTCTCAAAAAAAAAAAAGGTCTG
GCAGAACAGTGGGAGTTAAATAAGAAGAGGGGTTGTTGGCGGATGGG Coding sequence (CDS) from alignment at sc0000395:90779..93575- >TCONS_00021822 ID=TCONS_00021822|Name=TCONS_00021822|organism=Clytia hemisphaerica|type=CDS|length=3174bp|location=Sequence derived from alignment at sc0000395:90779..93575- (Clytia hemisphaerica)
GGTGGATAATGTGGTTTTCCTCAGTATTGCCGATCAGGAAAACTCTGGTT
TCGAAACAGCAAAATATCTCACATACGGTTGTTACCAACGTAAAAACATG
GGATATCTTTACGCTATACGACACGGCGCGCGATACATCTACGACACAGA
CGACGATAATCATCCTTACGGCGGACAAGTCGTTTTTGATGAGATGGAGC
AAACGAAATCGTACCTCATGTACGACGGTGGTTCTGAGCGACACTATTAT
AACACATTCGCACATTTCGGTCAAAGCACGTTATGGCCACGTGGCTTTCC
ATTAGATCGAATCGATAAAAATCCCATGCGTCGGTATAAGACATGCTCCA
ATACACGCCCTCTTGTACAACAGGGCGTCGTGGACGGTGATCCCGATTTA
GACGCCATCCAACGCTTAACACGAAAAGACGCGTCAGCTAAATTTGTTGT
TTACTTCGATAAAGAAGCACCGCCCGTTGTTTTACCGCCCAAATCGTTCG
CCCCTTACAACAGTCAAAACACCTTTCAACATTATGATATTTTCTTTGCC
TTACTCCTTCCAATCACTGTTACCTTCCGCGTCAACGATATTTGGAGAAG
TTATATTGCACAACGTTTGGTGTGGGATATTGGCGGCCACCTGGCATATT
TCCCGCCCAACGCCTATCAGGATCGAACTCCCCATAATTTCTTAAAAGAC
TTTTACGAAGAAGACGACCTTTATAGATTAACAAATCCTTTAACTGAATT
TCTCTTAAAATGGGATTCAAAGAACAGCAATATGGTTGAGCGACATTTTG
AAATCATTAAAGAATTATATAAGCTTGATATTCTTGGACCACGTGATGTA
CGTTTAGCACGTGCTTGGGCACGTGATCTGAGAAGGATTGGATACAAACC
ACCCAAAATGCAACAGTCNGTTATATAAGCAGATAAGTCAAAATGCAATC
GGCAAAAGAATGAAACTATTACAGTAAAAAGGATACAACGTGATGTTAAG
AGTTTTCTTACGAGTATAACAACCATGAAGTTTACGGCTGCGTTGGCGGT
TGGTCTCATTTGTTTTGGTTTAACCTTCTACACGTATATATCACTCAAAA
ATGTGCCACATATACCTTCGAATACAATCGAGTCGATTCAAAGAAACCTA
GAAATATTGACATCGGATCAAAAGCACCATGGCGAATCTGTACAAGCACT
TCTCAACGGTTTGGAAAGTTTGAAAAATACCATAAACAGGTTGAAATCAT
CAGCTAGGGATGAAACACCCTCAATGAAAGAACAAGTTGGTGACGAGATA
AAGCGTGCTTTGGAGGAAAACTTCAACAAATTCAACCAACAAAACAAAGA
TGTTAAAATACAGGAAAACCCTGCAGATAAAACAATACACAAACGAGGTT
TAGAGAAGCTTTCTTTAGACTTAGACGAGGTTGAGAAATTACCAAAGCCT
TTGGATTCAGAGATGAACGAACGTTGGATTGTGGTGACCAGCATTTTCAA
ACCAACAGAGGATATCAAGAAGTTGGCAAAGATTCAAGGCTGGAAAATGG
TAGTGGTTGGAGACACTAAATCACCTAAAGAATACAAGGTGGATAATGTG
GTTTTCCTCAGTATTGCCGATCAGGAAAACTCTGGTTTCGAAACAGCAAA
ATATCTCACATACGGTTGTTACCAACGTAAAAACATGGGATATCTTTACG
CTATACGACACGGCGCGCGATACATCTACGACACAGACGACGATAATCAT
CCTTACGGCGGACAAGTCGTTTTTGATGAGATGGAGCAAACGAAATCGTA
CCTCATGTACGACGGTGGTTCTGAGCGACACTATTATAACACATTCGCAC
ATTTCGGTCAAAGCACGTTATGGCCACGTGGCTTTCCATTAGATCGAATC
GATAAAAATCCCATGCGTCGGTATAAGACATGCTCCAATACACGCCCTCT
TGTACAACAGGGCGTCGTGGACGGTGATCCCGATTTAGACGCCATCCAAC
GCTTAACACGAAAAGACGCGTCAGCTAAATTTGTTGTTTACTTCGATAAA
GAAGCACCGCCCGTTGTTTTACCGCCCAAATCGTTCGCCCCTTACAACAG
TCAAAACACCTTTCAACATTATGATATTTTCTTTGCCTTACTCCTTCCAA
TCACTGTTACCTTCCGCGTCAACGATATTTGGAGAAGTTATATTGCACAA
CGTTTGGTGTGGGATATTGGCGGCCACCTGGCATATTTCCCGCCCAACGC
CTATCAGGATCGAACTCCCCATAATTTCTTAAAAGACTTTTACGAAGAAG
ACGACCTTTATAGATTAACAAATCCTTTAACTGAATTTCTCTTAAAATGG
GATTCAAAGAACAGCAATATGGTTGAGCGACATTTTGAAATCATTAAAGA
ATTATATAAGCTTGATATTCTTGGACCACGTGATGTACGTTTAGCACGTG
CTTGGGCACGTGATCTGAGAAGGATTGGATACAAACCACCCAAAATGCAA
CAGTCNGTTATATAAGCAGATAAGTCAAAATGCAATCGGCAAAAGAATGA
AACTATTACAGTAAAAAGGATACAACGTGATGTTAAGAGTTTTCTTACGA
GTATAACAACCATGAAGTTTACGGCTGCGTTGGCGGTTGGTCTCATTTGT
TTTGGTTTAACCTTCTACACGTATATATCACTCAAAAATGTGCCACATAT
ACCTTCGAATACAATCGAGTCGATTCAAAGAAACCTAGAAATATTGACAT
CGGATCAAAAGCACCATGGCGAATCTGTACAAGCACTTCTCAACGGTTTG
GAAAGTTTGAAAAATACCATAAACAGGTTGAAATCATCAGCTAGGGATGA
AACACCCTCAATGAAAGAACAAGTTGGTGACGAGATAAAGCGTGCTTTGG
AGGAAAACTTCAACAAATTCAACCAACAAAACAAAGATGTTAAAATACAG
GAAAACCCTGCAGATAAAACAATACACAAACGAGGTTTAGAGAAGCTTTC
TTTAGACTTAGACGAGGTTGAGAAATTACCAAAGCCTTTGGATTCAGAGA
TGAACGAACGTTGGATTGTGGTGACCAGCATTTTCAAACCAACAGAGGAT
ATCAAGAAGTTGGCAAAGATTCAAGGCTGGAAAATGGTAGTGGTTGGAGA
CACTAAATCACCTAAAGAATACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00021822-exon-sc0000395-1575043694:92916..93575 | TCONS_00021822-exon-sc0000395-1575043694:92916..93575 | Clytia hemisphaerica | exon |
| TCONS_00021822-exon-sc0000395-1575043694:90779..92663 | TCONS_00021822-exon-sc0000395-1575043694:90779..92663 | Clytia hemisphaerica | exon |
| TCONS_00021822-exon-sc0000395-1510915933:92916..93575 | TCONS_00021822-exon-sc0000395-1510915933:92916..93575 | Clytia hemisphaerica | exon |
| TCONS_00021822-exon-sc0000395-1510915933:90779..92663 | TCONS_00021822-exon-sc0000395-1510915933:90779..92663 | Clytia hemisphaerica | exon |
| TCONS_00021822-exon-sc0000395-1491911889:92916..93575 | TCONS_00021822-exon-sc0000395-1491911889:92916..93575 | Clytia hemisphaerica | exon |
| TCONS_00021822-exon-sc0000395-1491911889:90779..92663 | TCONS_00021822-exon-sc0000395-1491911889:90779..92663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000395 | supercontig | sc0000395:90779..93575 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR005049 | STL-like |
Blast
The following BLAST results are available for this feature:
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