TCONS_00021829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021829
Unique NameTCONS_00021829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021829 ID=TCONS_00021829|Name=TCONS_00021829|organism=Clytia hemisphaerica|type=transcript|length=2226bp
agttctttcatctttttcaaTGTGCAATATTTCTTATATCCATAATTCTC
TCTCCCATTATTCTTTCacagaaataaaattttcaagaataaaAATAAGG
TGTTACAGAAAATATCAAGATTAAAAATATCACAAGAGAAAACCTagaaa
gaaaaataacgaaaaattaTTAACTTTGATATCCAAATCATAGAAGAGAA
AGTAAAAGaagattttaaatgtttttgggGATAATTGAAAAAAACGTGAC
AGAGTAAACCAAcacatcaatcaatcaatatggATGAGACAAAAAGACTA
ACAAGTTATTTGTTTATATTCGGAGCACTTTTTGCTCTTGTATTGGCTTC
GAATCACAATAAATGGAACGGATGGAATCCGGAACAACATCCGCATGCTT
TCGGATACACTGACCAAGATGGAAACTGCCAATGTGGTGGTAGTTCTCGA
ATGTCTGATATGTCGATGTTTAATTCTATGGAATTCCGCCCACCCCATTC
CGCCTCTATGCACCCTAGTGGAAGCCTTTACCAATCAAAGATGGTATCAT
CATATGGAGAAATGGTGTCTGCCTCTCAAGCTATGCAGCAAATGAATTCT
TGTGCTGAGAATTCCTCATGTGTGATGCAATCAGTAAATGGTAGTGTAAG
CCCCAGTGCAAGTGCAAGCAGCATGTCAGCATCAATGTCTGCATCGGCAT
CAGCAAgtatttcatcatcagttttGGAACAACAATTCAGTTCAGCTGCA
ATGTCTTCGTCCTCAGTTGGCAATGTTGCTGCTTCAAGTATGATTGCAAG
CAGTAGTGGTAGCATCTCACCATCGGGATCTATGATGGTATCACAAATGA
TGAACTCCATGAATAATTCTCAATACTGGTCTCAAGTTAAAGAGTCGATG
TCTGGCTATATGTCACACAATGCATCTCATGGTATGTCACGCCACATGTC
ACAACATCCTCACATGTCTTCAATCATGCCCTCAATGCATCATTCAATAA
TCCATTCAAGTGGCATGCAACACGGACAGCGATGTCTTTGCCCTGAATAC
CAATCAAGATACCCGGATATGAAATCGTCAAAAATGATGAAGGGAAGCTC
GCACATGATCAAACCATCAAAAGCAATGAGTTCTATGATGAAGATGTCTT
CAGCAATATTGGATAGACCATTGATGAATTACACTGAACTGAATTCAAAA
GAAGGTTTTACTTTGAGAAGATCTGTAGCTATTGCAGGAGTCGTCAAACA
ATCAGGGGAAATTGAAATGAAGGTTGATAGAAATGCACAATGGCAACAAC
TTTCTTCTCCTTCAGCATCAGCAGCTATTGTTCTTCCCTCAGCTGGATAT
CTGAGATTTGTGCCATCAAACAAGGAATATTATGGAGTAGCCAAGCTAAG
TATTGTTGCTACAAATAAACTGTCTGGAACAGACGATACAACTGGATCTA
CACCCAGCTTTGTTTACATTCTGATTGAGCCAGAAGAAGTTAAACCAAGG
TTTAATGGAACTGCACCTGCAATTTTCTTCACCATTGACGAGGATAGCCC
ATGTCAATCTTTCCAGccTTCCAAGATGAATTCCAGTTATTCTagCTTGA
AAATGAATACCTTTGACTTTGATGAAAGCAAATTTACATCGTATATGAGT
GAAATTGATGCCGACAAGTTTGGCATGTTTAAAAGCAATGTGGAAATGAG
AAACAACTATACTCAAGGGGCATGGTTGAGACGTGCAGCATCTGGAAGTG
GACGTTGGTTTTATACGACCAATGGTAAAAAGAAGCCATTTGAACAATCG
TGGGCAAAAACCAGGAAAGTGGCAGAGATCTCGAACTTTGCATTATGCTT
CGTGCCTGCACCTGATGTTTTTGGCTTTGTGGAGCTTCTCATTTCTCCAG
CATTTATTGTTGGTAAAGGTAAAGGAAATGATAAAGGACAAGGAAAGGAT
GGAATCATATATGGTGACCAAGAATATAAACTGGTTATTAAGATCAGAGA
TATTAATGATCGTCCAATTATCAAGGATCCAAAACTAGATGTCAAAGCAT
TACCATATAATATGAGTGGATTCTCTAACACTGGATTTCAAGTATCTCAA
TTATTGGAAAAGAGTAGCCGTGGAAAAAAGAGATCAGTCTTCGCTGATAA
GGATGGTGATACACTAGGTATGTAATGATTCATTTTGttgtacagttgac
tctcgctaattcgaactagaacgggg
Run BLAST on NCBI

transcript from alignment at sc0000395:141830..146354-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021829 ID=TCONS_00021829|Name=TCONS_00021829|organism=Clytia hemisphaerica|type=transcript|length=4525bp|location=Sequence derived from alignment at sc0000395:141830..146354- (Clytia hemisphaerica)
AGTTCTTTCATCTTTTTCAATGTGCAATATTTCTTATATCCATAATTCTC
TCTCCCATTATTCTTTCACAGAAATAAAATTTTCAAGAATAAAAATAAGG
TGTTACAGAAAATATCAAGATTAAAAATATCACAAGAGAAAACCTAGAAA
GAAAAATAACGAAAAATTATTAACTTTGATATCCAAATCATAGAAGAGAA
AGTAAAAGAAGATTTTAAATGTTTTTGGGGATAATTGAAAAAAACGTGAC
AGAGTAAACCAACACATCAATCAATCAATATGGATGAGACAAAAAGACTA
ACAAGTAAGTTTTCTCTCCTTTTGTCTTCCGTGTTCTATCAAATTAATCT
AATGTTTGAGCCCTAAAGGTAAAAAATTTGATGGTTGCCCTTTACTCTTT
CTAGCCATATCTCGGCTTTCTACTCTCTTCACAAATGCCATTTATTATTC
TATTTATCATAAAAGTCCATGAAAATTGCAGCAAAATTCGTGCCCAACAA
CCTCTTGGTTCTCTTTTTATGATATTTTTTAAATTCATGATATTCATGAC
GTAATGTGTTATATTGATGAATTACCCATTAGATTTCTTGTATAATGTAA
AATTAGTTGCAAACACCCAATCCTTTTTGAGTACTTTCGTATAAAATATT
ACACTATATGAATATCACGAATAGCGCTCCCAATTTCATTACGTCCATTG
GTAAAATAAAAAGTGGGGCAAGTGGTTCTGAAGGATTTTAAATTGAAGTT
TACATTCATTTTCAAAATTTTAAATAACTTTAAATTATCTCTAGGTTATT
TGTTTATATTCGGAGCACTTTTTGCTCTTGTATTGGCTTCGAATCACAAT
AAATGGAACGGATGGAATCCGGAACAACATCCGCATGCTTTCGGATACAC
TGACCAAGATGGAAACTGCCAATGTGGTGGTAGTTCTCGAATGTCTGATA
TGTCGATGTTTAATTCTATGGAATTCCGCCCACCCCATTCCGCCTCTATG
CACCCTAGTGGAAGCCTTTACCAATCAAAGATGGTATCATCATATGGAGA
AATGGTGTCTGCCTCTCAAGCTATGCAGCAAATGAATTCTTGTGCTGAGA
ATGTAAGTTTCACCTCTTTTTATTTCGATAGAAATATTCTTCAATATATA
TCTGATGATTGTATAGGCGGTACAAAAATTTAAATCGTGTGTCTCCCACC
AAACACACGCGGCACGATCAGAAAAGAAAGATTTTAGATGTTGTTGTGGA
GCAAGAAAGCTTTTATTGCTCCACAACAGCCTATCATTTTCGGAAATATC
AAAATGGTAGCATAAAGATGCGCAAACTAAAAAGGAAGAAAAACTCTGCT
GTATGCTGTATGTAGAAATACCCACCCTGTACCTAAATTCCCCTTCTCAT
TTTCAGTCCTCATGTGTGATGCAATCAGTAAATGGTAGTGTAAGCCCCAG
TGCAAGTGCAAGCAGCATGTCAGCATCAATGTCTGCATCGGCATCAGCAA
GTATTTCATCATCAGTTTTGGAACAACAATTCAGTTCAGCTGCAATGTCT
TCGTCCTCAGTTGGCAATGTTGCTGCTTCAAGTATGATTGCAAGCAGTAG
TGGTAGCATCTCACCATCGGGATCTATGATGGTATCACAAATGATGAACT
CCATGAATAATTCTCAATACTGGTCTCAAGTTAAAGAGTCGATGTCTGGC
TATATGTCACACAATGCATCTCATGGTATGTCACGCCACATGTCACAACA
TCCTCACATGTCTTCAATCATGCCCTCAATGCATCATTCAATAATCCATT
CAAGTGGCATGCAACACGGACAGCGATGTCTTTGCCCTGAATACCAATCA
AGATACCCGGATATGAAATCGTCAAAAATGATGAAGGGAAGCTCGCACAT
GATCAAACCATCAAAAGCAATGAGTTCTATGATGAAGATGTCTTCAGCAA
TATTGGATAGACCATTGATGAATTACACTGAACTGAATTCAAAAGAAGGT
TTTACTTTGAGAAGATCTGTAGCTATTGCAGGAGTCGTCAAACAATCAGG
GGAAATTGAAATGAAGGTTGATAGAAATGCACAATGGCAACAACTTTCTT
CTCCTTCAGCATCAGCAGCTATTGTTCTTCCCTCAGCTGGATATCTGAGG
TGAGAGATTTTGCTTGAAAACTATTGTTTGCACCACTTTAAAAATCTGCA
AAGACATTCCTGTTTTGAAAGTTTATAATTTCTCAGAATAATTAATGAGC
CCCCCCCAGCAGGACCCTCAATTCACGCAATCACGCAATTTTTTTTCGAA
ATTCATGTATTCACGCAAATTTTCCTCGACTTTCACGCAATAATCTGATT
TTTTAGAAAATCAGGAAATTTTCGATAAAAATCGGGGAAACATTGGAAAA
TCGGGAAAACATTGGAAAATCCGGAAAACTACCCATAATTGGTGGAAAGA
GGGGAAAATTCACGTATTCACGCACAAAATAGCCCAGATTCACGCATTCA
CGCAATCAAAAAGTGGATTTTCACGTTCACGCAAGTTTTTTCAATTCACG
CATTCACGAATTATTTTTCAAATTTTCACGCATTCACGCAACTGAAAAGG
CCCATTCACGCATTCACGCAAACCGCTGGGGGGGGCCATTAATGTCCAAT
TTAATCCTTAAAAATTCTGAATTCTAGGGCTATAAATGAGTTTTAATTCT
GACCTACTTATGAAAGAAATTGTCAAAATTTTGAAGCACCACTTAAATTC
AAAAATCTCATTTCTTTTCAGATTTGTGCCATCAAACAAGGAATATTATG
GAGTAGCCAAGCTAAGTATTGTTGCTACAAATAAACTGTCTGGAACAGAC
GATACAACTGGATCTACACCCAGCTTTGTTTACATTCTGATTGAGCCAGA
AGAAGTTAAACCAAGGTTTAATGGAACTGCACCTGCAATTTTCTTCACCA
TTGACGAGGATAGCCCATGTCAATCTTTCCAGGTGATTAAAATAAATTGT
TCTTATTTATATAGGCTTAAGGAGTGTTGTCGAGAACATGATAGAAGCAA
GGATTCTTATTGATTGTTCATATAACTGATATTAACTTTGACTGCATTGA
TCGTTGTATAACACTGAATTCTTACTATTATCAACACGTTTATTGATAGG
CAGTTCAAAGTCATCACATCACCAAGGTTTTAATATAATTCAATTGGAAC
AAATTTTAACAAAATATTTCAAAATTTATTTTTAGCCTTCCAAGATGAAT
TCCAGTTATTCTGTAAGTTTTACTGTTTGTTTTAAACTCCCAAAAGAATT
TCAATCTTTACATTTTTTGCTAAATTTTTATTAAGTTTATCCTTTTTTGC
TACTCCTTTAAAGAAACTATATTTTTTCTTATCTTCGATCACTAACCAAA
ACACTCTTTCTTTGATTCTTTGATAATATGATTTTTAAAACATGTATTCT
AAAAACTTTACAGAGCTTGAAAATGAATACCTTTGACTTTGATGAAAGCA
AATTTACATCGTATATGAGTGAAATTGATGCCGACAAGTTTGGCATGTTT
AAAAGCAATGTGGAAATGAGAAACAACTATACTCAAGGGGCATGGTTGAG
ACGTGCAGCATCTGGAAGTGGTACGGTTCTTTTTCAGTTTGTTCTTAAAA
CTCATTGTTTATGACGCAAATGATGCTACTAAAATTATGACCCTCTTAAA
CTCTGACAGTGACTTTAAGTTTGTAAAATTGTCAAATATTTATGGATTGT
TTTACATAAATTACTTTAAACCATACAATACAATTCCTAAAACTTCTCTT
GTAAATAATAAATACGTTTTTGTTTATCATTAATGCTAGTGTTCCTTTCT
TCTCGTAAATAATAAATACGTTTTTGTTCGTCATTAGTGCTATTGTTCCT
TAATGATATTCTTTTATCCTCTGAGTTGCACATGCAGTAGACTCTTCCCC
CATTCGAACCTTTGAATTATGAACAGTCACCTAATACATACAAAATGAGT
GTATACATGATAAAAAGACAATAAATATTTCAAACTCTTTATTTCACAGG
ACGTTGGTTTTATACGACCAATGGTAAAAAGAAGCCATTTGAACAATCGT
GGGCAAAAACCAGGAAAGTGGCAGAGATCTCGAACTTTGCATTATGCTTC
GTGCCTGCACCTGATGTTTTTGGCTTTGTGGAGCTTCTCATTTCTCCAGC
ATTTATTGTTGGTAAAGGTAAAGGAAATGATAAAGGACAAGGAAAGGATG
GAATCATATATGGTGACCAAGAATATAAACTGGTTATTAAGATCAGAGAT
ATTAATGATCGTCCAATTATCAAGGATCCAAAACTAGATGTCAAAGCATT
ACCATATAATATGAGTGGATTCTCTAACACTGGATTTCAAGTATCTCAAT
TATTGGAAAAGAGTAGCCGTGGAAAAAAGAGATCAGTCTTCGCTGATAAG
GATGGTGATACACTAGGTATGTAATGATTCATTTTGTTGTACAGTTGACT
CTCGCTAATTCGAACTAGAACGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012251XLOC_012251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021829-exon-sc0000395-1575043694:146051..146354TCONS_00021829-exon-sc0000395-1575043694:146051..146354Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1575043694:145253..145560TCONS_00021829-exon-sc0000395-1575043694:145253..145560Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1575043694:144206..144948TCONS_00021829-exon-sc0000395-1575043694:144206..144948Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1575043694:143373..143583TCONS_00021829-exon-sc0000395-1575043694:143373..143583Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1575043694:143093..143119TCONS_00021829-exon-sc0000395-1575043694:143093..143119Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1575043694:142735..142891TCONS_00021829-exon-sc0000395-1575043694:142735..142891Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1575043694:141830..142305TCONS_00021829-exon-sc0000395-1575043694:141830..142305Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:146051..146354TCONS_00021829-exon-sc0000395-1510915933:146051..146354Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:145253..145560TCONS_00021829-exon-sc0000395-1510915933:145253..145560Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:144206..144948TCONS_00021829-exon-sc0000395-1510915933:144206..144948Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:143373..143583TCONS_00021829-exon-sc0000395-1510915933:143373..143583Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:143093..143119TCONS_00021829-exon-sc0000395-1510915933:143093..143119Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:142735..142891TCONS_00021829-exon-sc0000395-1510915933:142735..142891Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1510915933:141830..142305TCONS_00021829-exon-sc0000395-1510915933:141830..142305Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:146051..146354TCONS_00021829-exon-sc0000395-1491911889:146051..146354Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:145253..145560TCONS_00021829-exon-sc0000395-1491911889:145253..145560Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:144206..144948TCONS_00021829-exon-sc0000395-1491911889:144206..144948Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:143373..143583TCONS_00021829-exon-sc0000395-1491911889:143373..143583Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:143093..143119TCONS_00021829-exon-sc0000395-1491911889:143093..143119Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:142735..142891TCONS_00021829-exon-sc0000395-1491911889:142735..142891Clytia hemisphaericaexon
TCONS_00021829-exon-sc0000395-1491911889:141830..142305TCONS_00021829-exon-sc0000395-1491911889:141830..142305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:141830..146354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5871	16.4654	44.9764	36.6341	1478.54	979.755	293.787	336.817	373.206	388.793	229.953	572.724	8.06443	6.43555	0.0399513	0.0428738	8.09595	8.43367	19.2661	26.7242	39.7275	37.6814	13.7541	22.1328	30.4385	34.8896	98.0821	107.208	3.52913	3.30618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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