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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021848 ID=TCONS_00021848|Name=TCONS_00021848|organism=Clytia hemisphaerica|type=transcript|length=2142bpRun BLAST on NCBI protein sequence of TCONS_00021848-protein >TCONS_00021848-protein ID=TCONS_00021848-protein|Name=TCONS_00021848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp AADFDGICLLMLFERLEFKCKLLANQLHEKHNIGELVEAGQPLEGLEGDQRun BLAST on NCBI transcript from alignment at sc0000395:242605..259598- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021848 ID=TCONS_00021848|Name=TCONS_00021848|organism=Clytia hemisphaerica|type=transcript|length=16994bp|location=Sequence derived from alignment at sc0000395:242605..259598- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000395:242605..259598- >TCONS_00021848 ID=TCONS_00021848|Name=TCONS_00021848|organism=Clytia hemisphaerica|type=CDS|length=41880bp|location=Sequence derived from alignment at sc0000395:242605..259598- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021848 vs. Swiss-Prot (Human)
Match: DCTN1 (Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3) HSP 1 Score: 264.618 bits (675), Expect = 6.046e-75 Identity = 212/666 (31.83%), Postives = 347/666 (52.10%), Query Frame = 3
Query: 3 AADFDGICLLMLFERLEFKCKLLANQLHEKHNIGELVEAGQPLEGLEGDQASHGSLFAYHLINLQLVLSQFLRALNACDVNTFTIVSGQYPELAAHEKILDTYIDFLQNDRLDDTVSVEVLEKTVENFKNFYKLNLASAERDCTDFLSDSLCFFQHGADAVAIDVQRLKGLAKACDEGSVFLNLVQMVTLKNIEIKQLCRKIKRRMIQDSN----TTLSYPVSVTQDLLDSMVEQMVLAKYVQDLASVLSLKAGQLQDEEVLLSGHLEESSQDCITMIY-EKDGDPLEILSESFQKVLMCLSGIAIKLPEGEYDTE-PEKKPTPPYLERAVTFKEELSSTTKLENKIDQKQHEVNEVXXXXXXXXXXXXXXNIRISLLEKRADNATKEATTKVEQMSKRLEGLQEEYLDKTRQSEKTMDALQHDVDELEVEKTDXXXXXXXXXXXXXXDYSALSQPSAAMASIVAPGKPGSTMASLAKAGVAGQSMVQV----VLKDSPVFLAQLDAQKKSLQTLQKENWALKCQKMKSDLAKIPKPYMPKVLWRDGKFVPNPLLQETGKKGESEVNSKTVMKECTNLMTNVNNLVAFPKIVDITKGKKADGKNKPSANDQLTSHLNIMNTLIQQKDQLSKKVQKVIANELPGSSIESDLRTFYSPEYVRMKKENE 1970
D D + +L+L RL K +L+ Q EK + E L G G+Q S + Y L LQ L ++ AL+ C V+ + V YPE++AHE+ LD I+ L D+LD+TV+VE L K ++ +++ Y ++LA DCT L+D + F Q D ++++V RL+ + E + L++ + +I+Q C+KI+RRM L++ V+ LLD + +Q++A+ + L + E LL LEE + IY P E L +S ++ ++ +A + EGEYD E P KP PP RA + E++ L K++ ++ + E+KKSLK K EELSEAN+R+SLLEK+ D+A K+A ++E++ RLE Q K ++ E+TMDALQ D+D+LE EK +LK++L SK++ P + +A++V+ G + + GQ+ V ++KDSP+ L Q+ A + + LQ EN LK +MK+ LA +P ++ K L +G P SE+ + + ++ + L+ +N L +VDIT+ A PSA QL + + +L ++L +V K ++ PG+++ +D TF S ++R K+E +
Sbjct: 600 GGDHDCVLVLLLMPRLICKAELIRKQAQEKFELSENCSERPGLRGAAGEQLSFAAGLVYSLSLLQATLHRYEHALSQCSVDVYKKVGSLYPEMSAHERSLDFLIELLHKDQLDETVNVEPLTKAIKYYQHLYSIHLAEQPEDCTMQLADHIKFTQSALDCMSVEVGRLRAFLQGGQEATDIALLLRDLETSCSDIRQFCKKIRRRMPGTDAPGIPAALAFGPQVSDTLLDCRKHLTWVVAVLQEVAAAAAQLIAPLAENEGLLVAALEELAFKASEQIYGTPSSSPYECLRQSCNILISTMNKLATAMQEGEYDAERPPSKP-PPVELRAAALRAEITDAEGLGLKLEDRETVIKELKKSLKIKGEELSEANVRLSLLEKKLDSAAKDADERIEKVQTRLEETQALLRKKEKEFEETMDALQADIDQLEAEKAELKQRLNSQSKRTIEGLRG--PPPSGIATLVS----GIAGEEQQRGAIPGQAPGSVPGPGLVKDSPLLLQQISAMRLHISQLQHENSILKGAQMKASLASLPPLHVAK-LSHEG---PG-----------SELPAGALYRKTSQLLETLNQLSTHTHVVDITRTSPA--AKSPSA--QLMEQVAQLKSLSDTVEKLKDEVLKETVSQRPGATVPTDFATFPSSAFLRAKEEQQ 1239 The following BLAST results are available for this feature:
BLAST of TCONS_00021848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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