TCONS_00021857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021857
Unique NameTCONS_00021857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021857 ID=TCONS_00021857|Name=TCONS_00021857|organism=Clytia hemisphaerica|type=transcript|length=571bp
GAACTGTTATGTGGAATTAATCTTTGAAACAGTAAAACATAAATGATTAT
TGATGAAGATTTAGTTACTTCACTTAAGAGATATCTTAAGCTAGTATCGG
AGCAGAGTAAAAATCGAAGAGTATTAGAATTTCAGTATATAATCCTGTAG
ATAAAATGAAGTTGTTTCGGCTTATTTGTTTATCATTGTTGACGTGTATC
TTTCATGACGTCGCCGGTTACAAATCTGACCACGTGGCAGCATCAAGCGT
TCGACATCTTAATGATGATGAAATTGATgagaatttcgtgaaaaaatcAG
ACAGCGAAGATGAATTTGATGATGAAGTTATAATGAAAAGAAAGATTGTT
TCTGTTGTTGGTGGAGATGGACCTGATGTGGTACGCAAAAGTGGATGTAT
TATTGTACCAGTTGAAAGTTGCAACACTCTTTTCATTGACGGCGCACTGA
AAGAAGTCTGCACAACTACTTATCAAAATTCTTGTATCTAAGTTTGTTAA
AAagtatcattttcaatttcaatctgATGTATTTTTCAATCTTATTTTCT
TTAATCTAGAGAAAAGCTTAC
Run BLAST on NCBI

protein sequence of TCONS_00021857-protein

>TCONS_00021857-protein ID=TCONS_00021857-protein|Name=TCONS_00021857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MKLFRLICLSLLTCIFHDVAGYKSDHVAASSVRHLNDDEIDENFVKKSDS
EDEFDDEVIMKRKIVSVVGGDGPDVVRKSGCIIVPVESCNTLFIDGALKE
VCTTTYQNSCI
Run BLAST on NCBI

transcript from alignment at sc0000395:167709..168279

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021857 ID=TCONS_00021857|Name=TCONS_00021857|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000395:167709..168279 (Clytia hemisphaerica)
GTAAGCTTTTCTCTAGATTAAAGAAAATAAGATTGAAAAATACATcagat
tgaaattgaaaatgatactTTTTAACAAACTTAGATACAAGAATTTTGAT
AAGTAGTTGTGCAGACTTCTTTCAGTGCGCCGTCAATGAAAAGAGTGTTG
CAACTTTCAACTGGTACAATAATACATCCACTTTTGCGTACCACATCAGG
TCCATCTCCACCAACAACAGAAACAATCTTTCTTTTCATTATAACTTCAT
CATCAAATTCATCTTCGCTGTCTgattttttcacgaaattctcATCAATT
TCATCATCATTAAGATGTCGAACGCTTGATGCTGCCACGTGGTCAGATTT
GTAACCGGCGACGTCATGAAAGATACACGTCAACAATGATAAACAAATAA
GCCGAAACAACTTCATTTTATCTACAGGATTATATACTGAAATTCTAATA
CTCTTCGATTTTTACTCTGCTCCGATACTAGCTTAAGATATCTCTTAAGT
GAAGTAACTAAATCTTCATCAATAATCATTTATGTTTTACTGTTTCAAAG
ATTAATTCCACATAACAGTTC

Coding sequence (CDS) from alignment at sc0000395:167709..168279

>TCONS_00021857 ID=TCONS_00021857|Name=TCONS_00021857|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000395:167709..168279 (Clytia hemisphaerica)
TTAGATACAAGAATTTTGATAAGTAGTTGTGCAGACTTCTTTCAGTGCGC
CGTCAATGAAAAGAGTGTTGCAACTTTCAACTGGTACAATAATACATCCA
CTTTTGCGTACCACATCAGGTCCATCTCCACCAACAACAGAAACAATCTT
TCTTTTCATTATAACTTCATCATCAAATTCATCTTCGCTGTCTgattttt
tcacgaaattctcATCAATTTCATCATCATTAAGATGTCGAACGCTTGAT
GCTGCCACGTGGTCAGATTTGTAACCGGCGACGTCATGAAAGATACACGT
CAACAATGATAAACAAATAAGCCGAAACAACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012264XLOC_012264Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021857-proteinTCONS_00021857-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021857-exon-sc0000395-1491911889:167709..168279TCONS_00021857-exon-sc0000395-1491911889:167709..168279Clytia hemisphaericaexon
TCONS_00021857-exon-sc0000395-1510915933:167709..168279TCONS_00021857-exon-sc0000395-1510915933:167709..168279Clytia hemisphaericaexon
TCONS_00021857-exon-sc0000395-1575043694:167709..168279TCONS_00021857-exon-sc0000395-1575043694:167709..168279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:167709..168279 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0955701	0	0	0	0	1.00801	0.353881	1.48656	1.12527	0.099292	0.130541	6.19209	2.91067	0.278252	0.716656	1.47144	1.80981	18.5443	20.1684	4.07453	5.1303	2.24741	3.26915	1.47313	2.34773	0.268768	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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