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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021858 ID=TCONS_00021858|Name=TCONS_00021858|organism=Clytia hemisphaerica|type=transcript|length=1328bp
TTTTTATCATAAGTTTCTTATGGGTGTGTGGATTgtgattttttgtcatt
ttgaaaaaaaaactcacatCTGGAGTGCATTACTAAACgaacatgttttt
gaacttTATGTTAATTTTATTCTTGAGCTTTTCAAAATACCTTCCAAACC
ATGAAATGTCAGCAACTTCTTTCAGAGAAAATGAAGACAAGGAAAACTAC
CGAGAGAATAATGTTTTCGATGAAGATGATAGTATTAAAAATCCAACATT
AACATTATTGGATAACATTGGTGATCTTGGTCATCAAACTAAAAAGTTAA
ACAAAAACCAAGACGAGAATGATATAGATATGCAAACTTTGAAACTGTCG
GAAGATAATAGTATTGTTGGCTCTGAAAATGGATACAGCTTGGACGAATC
AAAAGTTCAACATTTAGAATCAATGAAAGATGAGGACTCTGATGAAGAAG
AGTACGAGAGACTCGACGAGGATTGGATCCAAAAGGAGGCTGCTGATGGA
CAAAGAAGAAGGAGGAGACGTACTCGGACCGTACGTTTACCTGCACCGTG
TGTTGAATCGGATGGCCAAGTTTGTCGGTGGCTTCTTGTGGATGGCGAGC
TCAAATATGTTTGTGAACGAGTGACTACCACTACTTGTAATTGATTTTCT
CATATTAGAGAATATGGGAGAGTACACCCCTGACTCACAGCCTCGTAGAA
Cccttttcctcagtggggataacaattcctattgaaatcccaatggggat
agaaattctattgttccaagtttAAAAAATCCGGAggggatggttttaga
gtgcaatttttaacaTTGAAATCCGAATGGGGACGaataaatcaaagtca
atttctaagtggggctgaaattacagggtttttttccaccggggatgaaa
tctctgccaaattttccagtggagctggggtcccagtgggtctgtgacac
aggggtgtgagaGTTAAGATGAATATTTTGTTCGACCCGTTGGAACTTTG
AAATGCTTCACTTCAACTGGTGTTTATATAGTTGGAGGGAATGTTGATGG
AAAATGATATTGCAAGGAAGTTACGATTTAAGGCTAGATTTATGGGGTTA
TGCAAGATGACTAAAGCAAACATTTACTTCGACTTGAAACTAATGTAGAA
GTGATTATCGCAGTTCATAGGATTTCCCTCCCTATAAGAAAAACTGCACG
TCGTGAAGACAAGCCACTGACATTAGTAACTGATACACTCtccaaaaaaa
tgattttgcaGACTTCCtgttgaaaatataaaagtttgGATGATTGGATT
TCTTTCTGTATGTTGTAAATCGGTAATG Run BLAST on NCBI protein sequence of TCONS_00021858-protein >TCONS_00021858-protein ID=TCONS_00021858-protein|Name=TCONS_00021858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MFLNFMLILFLSFSKYLPNHEMSATSFRENEDKENYRENNVFDEDDSIKN
PTLTLLDNIGDLGHQTKKLNKNQDENDIDMQTLKLSEDNSIVGSENGYSL
DESKVQHLESMKDEDSDEEEYERLDEDWIQKEAADGQRRRRRRTRTVRLP
APCVESDGQVCRWLLVDGELKYVCERVTTTTCN Run BLAST on NCBI transcript from alignment at sc0000395:168911..170238 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021858 ID=TCONS_00021858|Name=TCONS_00021858|organism=Clytia hemisphaerica|type=transcript|length=1328bp|location=Sequence derived from alignment at sc0000395:168911..170238 (Clytia hemisphaerica)
CATTACCGATTTACAACATACAGAAAGAAATCCAATCATCcaaactttta
tattttcaacaGGAAGTCtgcaaaatcatttttttggaGAGTGTATCAGT
TACTAATGTCAGTGGCTTGTCTTCACGACGTGCAGTTTTTCTTATAGGGA
GGGAAATCCTATGAACTGCGATAATCACTTCTACATTAGTTTCAAGTCGA
AGTAAATGTTTGCTTTAGTCATCTTGCATAACCCCATAAATCTAGCCTTA
AATCGTAACTTCCTTGCAATATCATTTTCCATCAACATTCCCTCCAACTA
TATAAACACCAGTTGAAGTGAAGCATTTCAAAGTTCCAACGGGTCGAACA
AAATATTCATCTTAACtctcacacccctgtgtcacagacccactgggacc
ccagctccactggaaaatttggcagagatttcatccccggtggaaaaaaa
ccctgtaatttcagccccacttagaaattgactttgatttattCGTCCCC
ATTCGGATTTCAAtgttaaaaattgcactctaaaaccatccccTCCGGAT
TTTTTaaacttggaacaatagaatttctatccccattgggatttcaatag
gaattgttatccccactgaggaaaaggGTTCTACGAGGCTGTGAGTCAGG
GGTGTACTCTCCCATATTCTCTAATATGAGAAAATCAATTACAAGTAGTG
GTAGTCACTCGTTCACAAACATATTTGAGCTCGCCATCCACAAGAAGCCA
CCGACAAACTTGGCCATCCGATTCAACACACGGTGCAGGTAAACGTACGG
TCCGAGTACGTCTCCTCCTTCTTCTTTGTCCATCAGCAGCCTCCTTTTGG
ATCCAATCCTCGTCGAGTCTCTCGTACTCTTCTTCATCAGAGTCCTCATC
TTTCATTGATTCTAAATGTTGAACTTTTGATTCGTCCAAGCTGTATCCAT
TTTCAGAGCCAACAATACTATTATCTTCCGACAGTTTCAAAGTTTGCATA
TCTATATCATTCTCGTCTTGGTTTTTGTTTAACTTTTTAGTTTGATGACC
AAGATCACCAATGTTATCCAATAATGTTAATGTTGGATTTTTAATACTAT
CATCTTCATCGAAAACATTATTCTCTCGGTAGTTTTCCTTGTCTTCATTT
TCTCTGAAAGAAGTTGCTGACATTTCATGGTTTGGAAGGTATTTTGAAAA
GCTCAAGAATAAAATTAACATAaagttcaaaaacatgttcGTTTAGTAAT
GCACTCCAGatgtgagtttttttttcaaaatgacaaaaaatcacAATCCA
CACACCCATAAGAAACTTATGATAAAAA Coding sequence (CDS) from alignment at sc0000395:168911..170238 >TCONS_00021858 ID=TCONS_00021858|Name=TCONS_00021858|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000395:168911..170238 (Clytia hemisphaerica)
TCAATTACAAGTAGTGGTAGTCACTCGTTCACAAACATATTTGAGCTCGC
CATCCACAAGAAGCCACCGACAAACTTGGCCATCCGATTCAACACACGGT
GCAGGTAAACGTACGGTCCGAGTACGTCTCCTCCTTCTTCTTTGTCCATC
AGCAGCCTCCTTTTGGATCCAATCCTCGTCGAGTCTCTCGTACTCTTCTT
CATCAGAGTCCTCATCTTTCATTGATTCTAAATGTTGAACTTTTGATTCG
TCCAAGCTGTATCCATTTTCAGAGCCAACAATACTATTATCTTCCGACAG
TTTCAAAGTTTGCATATCTATATCATTCTCGTCTTGGTTTTTGTTTAACT
TTTTAGTTTGATGACCAAGATCACCAATGTTATCCAATAATGTTAATGTT
GGATTTTTAATACTATCATCTTCATCGAAAACATTATTCTCTCGGTAGTT
TTCCTTGTCTTCATTTTCTCTGAAAGAAGTTGCTGACATTTCATGGTTTG
GAAGGTATTTTGAAAAGCTCAAGAATAAAATTAACATAaagttcaaaaac
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021858-exon-sc0000395-1491911889:168911..170238 | TCONS_00021858-exon-sc0000395-1491911889:168911..170238 | Clytia hemisphaerica | exon |
| TCONS_00021858-exon-sc0000395-1510915933:168911..170238 | TCONS_00021858-exon-sc0000395-1510915933:168911..170238 | Clytia hemisphaerica | exon |
| TCONS_00021858-exon-sc0000395-1575043694:168911..170238 | TCONS_00021858-exon-sc0000395-1575043694:168911..170238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:168911..170238 . |
Blast
The following BLAST results are available for this feature:
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