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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021871 ID=TCONS_00021871|Name=TCONS_00021871|organism=Clytia hemisphaerica|type=transcript|length=4215bpRun BLAST on NCBI transcript from alignment at sc0000396:40642..48909+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021871 ID=TCONS_00021871|Name=TCONS_00021871|organism=Clytia hemisphaerica|type=transcript|length=8268bp|location=Sequence derived from alignment at sc0000396:40642..48909+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021871 vs. Swiss-Prot (Human)
Match: SSPO (SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1) HSP 1 Score: 507.679 bits (1306), Expect = 3.224e-150 Identity = 283/765 (36.99%), Postives = 414/765 (54.12%), Query Frame = 2
Query: 203 STTINLSNRTIVLGQGGRVMVDNTVVMLPYI-RRGILIRQVXXXXXXXXXXIGLDVMFDGKTTIYVTVSPDFFDSTCGLCGTFNNKQQDDFTTPEGNIDSTALSFGNSWSVSSPCQRATHS---VDPCVVQKQKATAADKKCKKLEMAPFTQCHRFVDPQPFIEACKYDVCGCQHGVECLCNAIAAYTKECSSKGVVIEWRNANVLPECAAMCVPGLVYQECGNICHRSCRDLTHEENCQ--SQCVAGCNCPNGTVLNDYNSCVPINDCPCQWDGNSYPSGQIIYKDKNHCEKCTCI-RGRFNCTVDAKNCKQQLKCPGNQIWLPGGSQCLRTCQSMHLPCLNQK----VTGGCQCANGTVWDEDRRQCVLNIDCPCHHNGRTYADGESYRWDCNTCTCKGNMWDCTANVCPGTCSAYGDPHYTTFDGKRFLFEGRCKYTVAEDRCGSLNNNGLFSVVMENILCGSTGSVCTKAVSFTVNDTTITLRKDQAMTIMP-SLAFMQSTPITKFEVIKSTFYDIIHTELGITLMWDRHTRVMISLQPQFKGKTCGLCGNFNDDQSDDFTTPEGDVVINTQELGDSWKMDTNCPDTKPLPHPCTVRKDRAPWSFKRCNILNQPLFQSCHMVVDPRPYFDACYHDTCGCDMGGDSHCLCTSVAAYAQACSSYGVHIKWRSQEFCPIQCEQCEVYKACGPSNPRTC-QNLCQPTLETLPVNCVEGCFCANDTVLHNGKCIKPSECPCYLNGLVYEPGSYIVRDCQPCTCNNG 2458
+ +++L + I L G V+V+ V LP+I G+ +R+ SS+F+ + + Y+T+ P GLCGTF QQDDF TP G+++++ +F + + V+ + + + PC Q+ A+ C L + F +CHR VD +PF C VCGC G +CLC ++AY + C+ +G WRN + C MC G Y+EC C + C E+C CVAGCNCP G + + CVP + CPCQ Y G K+ C +C C RG +NCT A++C Q CP ++ PG CL TC S P N T GC C GTV ++R CV CPC H+G+ Y + + DCN C C+G W CT G C A G PHY TFDG F + G C+Y + + +GLF+V +N+ CG++G CTKA++ + T + + + +A+T+ S+ + + ++ + ++ T LG+TL+WD TRV++ L PQF+G+ GLCG+F+ D S+D + +G + + SW++ CP+ LPHPCT+ RA W+ RC L QPLF CH V P+ +++ C +D CGCD GGD CLC+++A YA C+ +G H++WRSQE C +QCE +VY+ACGP+ P TC + +P V CVEGCFC T+LH G C++P+ CPC + PGS + +DC CTC G
Sbjct: 618 AISVSLEDTHIQLRDSGAVLVNGQDVGLPWIGAEGLSVRRASSAFLLLRWPGAQVLWGLSDPVAYITLDPRHAHQVQGLCGTFTQNQQDDFLTPAGDVETSIAAFASKFQVAGKGRCPSEDSALLSPCTTHSQRHAFAEAACAILHSSVFQECHRLVDKEPFYLRCLAAVCGCDPGSDCLCPVLSAYARRCAQEGASPPWRNQTL---CPVMCPGGQEYRECAPACGQHC---GKPEDCGELGSCVAGCNCPLGLLWDPEGQCVPPSLCPCQLGARRYAPGSATMKE---CNRCICQERGLWNCT--ARHCPSQAFCPRELVYAPGA--CLLTCDS---PSANHSCPAGSTDGCVCPPGTVLLDER--CVPPDLCPCRHSGQWYLPNATIQEDCNVCVCRGRQWHCTGQRRSGRCQASGAPHYVTFDGLAFTYPGACEYLLVRE------ASGLFTVSAQNLPCGASGLTCTKALAVRLEGTVVHMLRGRAVTVNGVSVTPPKVYTGPGLSLRRAGLFLLLSTHLGLTLLWDGGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRSRQGVLEPTAELAAHSWRLSPLCPEPGDLPHPCTMNTHRAGWARARCGALLQPLFTLCHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQELCSLQCEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHGGACLEPASCPCEWGRNSFPPGSVLQKDCGNCTCQEG 1358 HSP 2 Score: 45.8246 bits (107), Expect = 3.224e-150 Identity = 27/62 (43.55%), Postives = 34/62 (54.84%), Query Frame = 1
Query: 1 WNCTTNQCPATCSVFGDPHYKTFDGRWYTFNG--LCKYMLASDCTGNTFNITTQNVPCNAFS 180
W+C CPA C+V GD HY TFDGR Y+F G C+Y L D I ++ C+A S
Sbjct: 553 WHCAQALCPAECAVGGDGHYLTFDGRSYSFWGGQGCRYSLVQDYVKGQLLILLEHGACDAGS 614 HSP 3 Score: 219.935 bits (559), Expect = 2.092e-57 Identity = 139/458 (30.35%), Postives = 213/458 (46.51%), Query Frame = 2
Query: 1130 CPGNQIWLPGGSQCLRTCQSM---HLPCLNQKVTGGCQCANGTVWDEDRRQCVLNIDCPCHHNGRTYADGESYRWDCNTCTCKGNMWDCTANVCPGTCSAYGDPHYTTFDGKRFLFEG--RCKYTVAEDRCGSLNNNGLFSVVMENILCGSTGSVCTKAVSFTVNDTTITLRKDQAMTIMPSLAFMQSTPITKFEVIKSTFYDIIHTELGITLMWDRHTRVM-ISLQPQFKGKTCGLCGNFNDDQSDDFTTPEGDVVINTQELGDSWKM--DTNCP-DTKPLPHPCTVRKDRAPWSFKRCNILNQPLFQSCHMVVDPRPYFDACYHDTCGCDMGGDSHCLCTSVAAYAQACSSYGVHIKWRSQEFCPIQCEQCEVYKACGPS------NPRTCQNLCQPTLETLPVNCVEGCFCANDTVLH-NGKCIKPSECPCYLNGLVYEPGSYIVRDCQPCTCNN 2455
CPG Q++ S C +C+++ ++ GC+C G W+ CV CPC++ + Y G++ R CN C C+ W C +CP C+ GD HY TFDG+ + F G C+Y++ +D G +++E+ C + C A+S ++ DT I LR A+ + + V +++ ++ G ++W V I+L P+ + GLCG F +Q DDF TP GDV + +++ CP + L PCT R ++ C IL+ +FQ CH +VD P++ C CGCD G D CLC ++AYA+ C+ G WR+Q CP+ C + Y+ C P+ P C L +CV GC C + G+C+ PS CPC L Y PGS +++C C C
Sbjct: 469 CPGGQLYSDCVSLCPPSCEAVGQGEEESCREECVSGCECPRGLFWNGTL--CVPAAHCPCYYCRQRYVPGDTVRQLCNPCVCRDGRWHCAQALCPAECAVGGDGHYLTFDGRSYSFWGGQGCRYSLVQD-----YVKGQLLILLEHGACDA--GSCLHAISVSLEDTHIQLRDSGAVLVNGQDVGLPWIGAEGLSVRRASSAFLLLRWPGAQVLWGLSDPVAYITLDPRHAHQVQGLCGTFTQNQQDDFLTPAGDVETSIAAFASKFQVAGKGRCPSEDSALLSPCTTHSQRHAFAEAACAILHSSVFQECHRLVDKEPFYLRCLAAVCGCDPGSD--CLCPVLSAYARRCAQEGASPPWRNQTLCPVMCPGGQEYRECAPACGQHCGKPEDCGEL---------GSCVAGCNCPLGLLWDPEGQCVPPSLCPCQLGARRYAPGSATMKECNRCICQE 906 HSP 4 Score: 177.948 bits (450), Expect = 1.790e-44 Identity = 104/314 (33.12%), Postives = 156/314 (49.68%), Query Frame = 2
Query: 200 RSTTINLSNRTIVLGQGGRVMVDNTVVMLP--YIRRGILIRQVXXXXXXXXXXIGLDVMFDGKTTIYVTVSPDFFDSTCGLCGTFNNKQQDDFTTPEGNIDSTALSFGNSWSVSSPCQRATHSVDPCVVQKQKATAADKKCKKLEMAPFTQCHRFVDPQPFIEACKYDVCGCQHG--VECLCNAIAAYTKECSSKGVVIEWRNANVLPECAAMCVPGLVYQECGNICHRSCRDLTHEENCQSQ---CVAGCNCPNGTVLNDYNSCVPINDCPCQWDGNSYPSGQIIYKDKNHCEKCTCIRGRFNCTVDAKNCKQ 1120
++ + L + + +G V V+ V P Y G+ +R+ + + +GL +++DG T + V +SP F GLCG F+ +D + +G ++ TA +SW +S C PC + +A A +C L FT CH V PQ E C YD CGC G ECLC+AIA Y EC+ G + WR+ + C+ C G VY+ CG C +C + E Q CV GC CP GT+L+ +C+ CPC+W NS+P G ++ KD C CTC G+++C D +C++
Sbjct: 1066 KALAVRLEGTVVHMLRGRAVTVNGVSVTPPKVYTGPGLSLRRAGLFLLLSTH-LGLTLLWDGGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRSRQGVLEPTAELAAHSWRLSPLCPEPGDLPHPCTMNTHRAGWARARCGALLQPLFTLCHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQEL---CSLQCEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHG-GACLEPASCPCEWGRNSFPPGSVLQKD---CGNCTCQEGQWHCGGDGGHCEE 1371 HSP 5 Score: 145.206 bits (365), Expect = 1.717e-34 Identity = 122/480 (25.42%), Postives = 183/480 (38.12%), Query Frame = 2
Query: 1133 PGNQIWLPGGSQCLRTCQSMHLP------CLNQKVTGGCQCANGTVWDEDRRQCVLNIDCPCHHNGRTYADGESYRWDCNTCTCKGNMWDCTANVCPGTCSAYGDPHYTTFDGKRFLFEGRCKYTVAEDRCGSLNNNGLFSVVMENILCGSTGSVCTKAVSFTVNDTTITLRKDQAMTIMPSLAFMQSTPIT-KFEVIKSTFYDIIH--------------TELGITLMWDRHTRVMISLQPQFKGKTCGLCGNFNDDQSDDFTTPEGDVVINTQELGDSWKM---DTNCPDTKPLPHPC----TVRKDRAPWSFKR-----CNILNQPLFQSCHMVVDPRPYFDACYHDTCGCDMGGDS-----HCLCTSVAAYAQACSSYGVHIKWRSQEFCPIQCEQCEVYKACGPSNPRTCQNLCQPTLETLPVNCVEGCFCANDTVLHNGKCIKPSECPCYLNGLVYEPGSYIVRDCQPCTCNNG 2458
P Q W G SQ R+C S HLP L Q + G A G +W + +R TC+++ HY TFDG+ + F GRC Y +L G+ S T AV T D Q +T+ P +Q+ ++ K +++ ++H LG+ + DR + IS+ + G+T GLCG +N DDF P G + + G+SW++ ++ C D + C + D P + C+ L + F CH V P Y +AC C M G +C + A+Y QAC+ +HI+WR FC C ++Y C P +C+ + Q E+ CV GC C + C+ + CPCY Y PG + + C PC C +G
Sbjct: 143 PWGQSWWDGSSQACRSCSSRHLPGSASSPALLQPLAG----AVGQLWSQHQRPSA-------------------------------------------TCASWSGFHYRTFDGRHYHFLGRCTY----------------------LLAGAADS--TWAVHLTPGDRCPQPGHCQRVTMGPEEVLIQAGNVSVKGQLVPEGQSWLLHGLSLQWLGDWLVLSGGLGVVVRLDRTGSISISVDHELWGQTQGLCGLYNGWPEDDFMEPGGGLAMLAATFGNSWRLPGSESGCLDAVEVAQGCDPLGLIDADVEPGHLRAEAQDVCHQLLEGPFGQCHAQVSPAEYHEACLFAYCAGAMAGSGQEGRQQAVCATFASYVQACARRHIHIRWRKPGFCERLCPGGQLYSDCVSLCPPSCEAVGQGEEESCREECVSGCECPRGLFWNGTLCVPAAHCPCYYCRQRYVPGDTVRQLCNPCVCRDG 551 HSP 6 Score: 127.102 bits (318), Expect = 5.479e-29 Identity = 92/310 (29.68%), Postives = 138/310 (44.52%), Query Frame = 2
Query: 236 VLGQGGRVMVDNTVVM--LPYIRRGILIRQVXXXXXXXXXXIGLDVMFDGKTTIYVTVSPDFFDSTCGLCGTFNNKQQDDFTTPEGNIDSTALSFGNSWSV---SSPCQRATHSVDPC---------VVQKQKATAADKKCKKLEMAPFTQCHRFVDPQPFIEACKYDVC-------GCQHGVECLCNAIAAYTKECSSKGVVIEWRNANVLPECAAMCVPGLVYQECGNICHRSCRDLTH--EENCQSQCVAGCNCPNGTVLNDYNSCVPINDCPCQWDGNSYPSGQIIYKDKNHCEKCTCIRGRFNCT 1096
VL Q G V V +V ++ G+ + Q ++ +S +G+ V D +I ++V + + T GLCG +N +DDF P G + A +FGNSW + S C A C V A C +L PF QCH V P + EAC + C G + + +C A+Y + C+ + + I WR C +C G +Y +C ++C SC + EE+C+ +CV+GC CP G N CVP CPC + Y G + + C C C GR++C
Sbjct: 255 VLIQAGNVSVKGQLVPEGQSWLLHGLSL-QWLGDWLVLSGGLGVVVRLDRTGSISISVDHELWGQTQGLCGLYNGWPEDDFMEPGGGLAMLAATFGNSWRLPGSESGCLDAVEVAQGCDPLGLIDADVEPGHLRAEAQDVCHQLLEGPFGQCHAQVSPAEYHEACLFAYCAGAMAGSGQEGRQQAVCATFASYVQACARRHIHIRWRKPGF---CERLCPGGQLYSDCVSLCPPSCEAVGQGEEESCREECVSGCECPRGLFWNG-TLCVPAAHCPCYYCRQRYVPGDTV---RQLCNPCVCRDGRWHCA 556 The following BLAST results are available for this feature:
BLAST of TCONS_00021871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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