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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021879 ID=TCONS_00021879|Name=TCONS_00021879|organism=Clytia hemisphaerica|type=transcript|length=757bp
gtaattattaagtcaaaaaaaattactatAAACAATGGGCAATCTTTTTA
CAACCAGCAAGCAATTACCCCGCTTCATGAAAGACCAAGAAATCCAAACG
GCTAAAATCGCACCAAAGATGGTCTGTTCTGCTACTCAGACAGCCTGTGG
TCCTGTCATGAATGAAATTGATGACCACACACGGTTGATACTGGGCATCG
TTGCACAGTCCAGAGAGGAACTCAAGCAACTACTGAAGAGTCAGAAGAGA
ATTGAGAGTGtcaGTGGATACTATGCGCGATCACGTGCTTCGTCAACGTC
ATCATCCTCCTCCTCCTCTAGATATTCCCCGTACACCAAAATCAAGAACC
GTTAAATCGTTGAACAGAAGACGTTGTTGGGTTGCTTGCATGTTGGATTC
CTgttattttagacttttttaatgacttttttatgaGTTTTATATGCTCC
CGAGTAATCTACATAGTAGAGACCACTATGTCGCAAGAATAAAAGTTTCA
GTGTGTAGGAGCTTGTGCAAAGAAGTTTTATGATTTATtgttgttccttg
aatgtaaaagatcaaaatttgagaggtgagGCCGGGTGTGACCATCCGTT
GCCATTGAAACTGACGTCATTTGTTACTATCGCctcacctctcaaatttt
gatcttttacattcaaggaacaacaATAAATTATAAAACTCCTTTACACA
AGCTCCTACACACTGGAAGACAAAATGGCCTCTACTGACAGTGTTGAGTT
TTTTTCA Run BLAST on NCBI protein sequence of TCONS_00021879-protein >TCONS_00021879-protein ID=TCONS_00021879-protein|Name=TCONS_00021879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MGNLFTTSKQLPRFMKDQEIQTAKIAPKMVCSATQTACGPVMNEIDDHTR
LILGIVAQSREELKQLLKSQKRIESVSGYYARSRASSTSSSSSSSRYSPY
TKIKNR Run BLAST on NCBI transcript from alignment at sc0000396:195517..196729+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021879 ID=TCONS_00021879|Name=TCONS_00021879|organism=Clytia hemisphaerica|type=transcript|length=1213bp|location=Sequence derived from alignment at sc0000396:195517..196729+ (Clytia hemisphaerica)
gtaattattaagtcaaaaaaaattactatAAACAATGGGCAATCTTTTTA
CAACCAGCAAGCAATTACCCCGCTTCATGAAAGACCAAGAAATCCAAACG
GCTAAAATCGCACCAAAGATGGTCTGTTCTGCTACTCAGACAGCCTGTGG
TCCTGTCATGAATGAAATTGATGACCACAGTAAGTGCTTTCACTTATTTC
GGTTTTGATCATTGTCACTAATTCATTTTGgaaaacaagtttttcataAA
TCTCCACATAAATTTAACAGTTTAAATATCAGTGCGAACAGATCGAAAAA
TTCCAGGTCATACGTATATTATANCTTTTCATAAATCTCCACATAAATTT
GCACTTTAGTTCACTACATTTTTTGGTAAATTTCATGACGTTTAAAAGAC
CCaaattacaaattacaaatttacaatcctattattttcttttaagactt
tttttgttttcctatTAAAGCACGGTTGATACTGGGCATCGTTGCACAGT
CCAGAGAGGAACTCAAGCAACTACTGAAGAGTCAGAAGAGAATTGAGAGT
GGTGAggaaaatttcttaattttcttttcttttctcagaTTGTTGAAATA
CCAAAACCTCCGTATTACTGGGACTTGCTTTTGATAGGCCTTAATAAAAT
ATGTTGTGGTCATTAtgacaacaaaaaaaataaaaaatgtatcgaataat
cttttttttcttttagtcaGTGGATACTATGCGCGATCACGTGCTTCGTC
AACGTCATCATCCTCCTCCTCCTCTAGATATTCCCCGTACACCAAAATCA
AGAACCGTTAAATCGTTGAACAGAAGACGTTGTTGGGTTGCTTGCATGTT
GGATTCCTgttattttagacttttttaatgacttttttatgaGTTTTATA
TGCTCCCGAGTAATCTACATAGTAGAGACCACTATGTCGCAAGAATAAAA
GTTTCAGTGTGTAGGAGCTTGTGCAAAGAAGTTTTATGATTTATtgttgt
tccttgaatgtaaaagatcaaaatttgagaggtgagGCCGGGTGTGACCA
TCCGTTGCCATTGAAACTGACGTCATTTGTTACTATCGCctcacctctca
aattttgatcttttacattcaaggaacaacaATAAATTATAAAACTCCTT
TACACAAGCTCCTACACACTGGAAGACAAAATGGCCTCTACTGACAGTGT
TGAGTTTTTTTCA Coding sequence (CDS) from alignment at sc0000396:195517..196729+ >TCONS_00021879 ID=TCONS_00021879|Name=TCONS_00021879|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000396:195517..196729+ (Clytia hemisphaerica)
ATGGGCAATCTTTTTACAACCAGCAAGCAATTACCCCGCTTCATGAAAGA
CCAAGAAATCCAAACGGCTAAAATCGCACCAAAGATGGTCTGTTCTGCTA
CTCAGACAGCCTGTGGTCCTGTCATGAATGAAATTGATGACCACACACGG
TTGATACTGGGCATCGTTGCACAGTCCAGAGAGGAACTCAAGCAACTACT
GAAGAGTCAGAAGAGAATTGAGAGTGtcaGTGGATACTATGCGCGATCAC
GTGCTTCGTCAACGTCATCATCCTCCTCCTCCTCTAGATATTCCCCGTAC
ACCAAAATCAAGAACCGTTAAATGGGCAATCTTTTTACAACCAGCAAGCA
ATTACCCCGCTTCATGAAAGACCAAGAAATCCAAACGGCTAAAATCGCAC
CAAAGATGGTCTGTTCTGCTACTCAGACAGCCTGTGGTCCTGTCATGAAT
GAAATTGATGACCACACACGGTTGATACTGGGCATCGTTGCACAGTCCAG
AGAGGAACTCAAGCAACTACTGAAGAGTCAGAAGAGAATTGAGAGTGtca
GTGGATACTATGCGCGATCACGTGCTTCGTCAACGTCATCATCCTCCTCC
TCCTCTAGATATTCCCCGTACACCAAAATCAAGAACCGTTAAATGGGCAA
TCTTTTTACAACCAGCAAGCAATTACCCCGCTTCATGAAAGACCAAGAAA
TCCAAACGGCTAAAATCGCACCAAAGATGGTCTGTTCTGCTACTCAGACA
GCCTGTGGTCCTGTCATGAATGAAATTGATGACCACACACGGTTGATACT
GGGCATCGTTGCACAGTCCAGAGAGGAACTCAAGCAACTACTGAAGAGTC
AGAAGAGAATTGAGAGTGtcaGTGGATACTATGCGCGATCACGTGCTTCG
TCAACGTCATCATCCTCCTCCTCCTCTAGATATTCCCCGTACACCAAAAT
CAAGAACCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021879-exon-sc0000396-1491911889:195517..195695 | TCONS_00021879-exon-sc0000396-1491911889:195517..195695 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1510915933:195517..195695 | TCONS_00021879-exon-sc0000396-1510915933:195517..195695 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1575043694:195517..195695 | TCONS_00021879-exon-sc0000396-1575043694:195517..195695 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1491911889:195987..196067 | TCONS_00021879-exon-sc0000396-1491911889:195987..196067 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1510915933:195987..196067 | TCONS_00021879-exon-sc0000396-1510915933:195987..196067 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1575043694:195987..196067 | TCONS_00021879-exon-sc0000396-1575043694:195987..196067 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1491911889:196233..196729 | TCONS_00021879-exon-sc0000396-1491911889:196233..196729 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1510915933:196233..196729 | TCONS_00021879-exon-sc0000396-1510915933:196233..196729 | Clytia hemisphaerica | exon |
| TCONS_00021879-exon-sc0000396-1575043694:196233..196729 | TCONS_00021879-exon-sc0000396-1575043694:196233..196729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:195517..196729 + |
Blast
The following BLAST results are available for this feature:
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