TCONS_00021888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021888
Unique NameTCONS_00021888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021888 ID=TCONS_00021888|Name=TCONS_00021888|organism=Clytia hemisphaerica|type=transcript|length=216bp
TGAGAAGCATTTTTTATGATTAGTCGGTTTCATTTCTTATTTGCAATTGA
ACAAGTTGGTGGTTACCACAGAGCTTGTTTTCAAgGCATTCAAGAATCAG
AGGATAAAGTGAACAATTATCAATAAAGAAAGATTATGcgataaaacatg
aaaaaattgcAAAGAGCTATCGCTATTTGCGCATTGCTTACATTGTGTTC
CATACGGCTTACGGGT
Run BLAST on NCBI

transcript from alignment at sc0000396:288121..289173+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021888 ID=TCONS_00021888|Name=TCONS_00021888|organism=Clytia hemisphaerica|type=transcript|length=1053bp|location=Sequence derived from alignment at sc0000396:288121..289173+ (Clytia hemisphaerica)
TGAGAAGCATTTTTTATGATTAGTCGGTTTCATTTCTTATTTGCAATTGA
ACAAGTTGGTGGTTACCACAGAGCTTGTTTTCAAggtaagattgtttttt
ttttgaaaagaaagtagTACTTTAAATTATGTTGCGTATATGGTGATAAA
AGACTTTTGagcaatctcgtacccagaacCACTTGTCTCTGCTTGCCACA
CTTTTTTATTTACCGTTGGACGTGATTCAATCGtaagcgctatcagaatc
agAAAGAAGTGGGTTTAAgtactgggttcgagtttgacGTTTTGAACACA
TGTTTGTGGATCTAATCATCTAGTTAAAATATTGATAGATTGCCAATCCA
AAACCCGGGAGGGGGAGGGGTATTTGGGCATAACGGCGATGTGCCGCTga
tcagggtaccttttttcatcTCCACGAGTCCCATAGGTAGGGttgcaaaa
acatcaaaatagaaaaaccaGTTCCTTGTAGGGTAAGTATTTGGGGGAAT
TGGGAAGAatatggaaaattttggaattccaAAAAATGAGTCCCAACACG
GGGttcatttttagtcaaaaatcaGCGGCAAGtatagtaccccccccccc
gggccaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCCCCCCGGGTCCAATACCACCCCTTTATTCACT
ATATGCATTATGCagttaaattagaaaaaacagGGACTAAACGTcataac
aatttttttcatccaaataCAGGCATTCAAGAATCAGAGGATAAAGTGAA
CAATTATCAATAAAGAAAGATTATGcgataaaacatgaaaaaattgcAAA
GAGCTATCGCTATTTGCGCATTGCTTACATTGTGTTCCATACGGCTTACG
GGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012282XLOC_012282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021888-exon-sc0000396-1491911889:288121..288205TCONS_00021888-exon-sc0000396-1491911889:288121..288205Clytia hemisphaericaexon
TCONS_00021888-exon-sc0000396-1510915933:288121..288205TCONS_00021888-exon-sc0000396-1510915933:288121..288205Clytia hemisphaericaexon
TCONS_00021888-exon-sc0000396-1575043694:288121..288205TCONS_00021888-exon-sc0000396-1575043694:288121..288205Clytia hemisphaericaexon
TCONS_00021888-exon-sc0000396-1491911889:289043..289173TCONS_00021888-exon-sc0000396-1491911889:289043..289173Clytia hemisphaericaexon
TCONS_00021888-exon-sc0000396-1510915933:289043..289173TCONS_00021888-exon-sc0000396-1510915933:289043..289173Clytia hemisphaericaexon
TCONS_00021888-exon-sc0000396-1575043694:289043..289173TCONS_00021888-exon-sc0000396-1575043694:289043..289173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:288121..289173 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.876455	10.5028	0.908942	0	0	0	0	4.19684	8.78338	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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