TCONS_00021890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021890
Unique NameTCONS_00021890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1075

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021890 ID=TCONS_00021890|Name=TCONS_00021890|organism=Clytia hemisphaerica|type=transcript|length=1075bp
GGCGAGGAAAGTAAGTCGAACATAATTACGTCTATTCTAGTCTACAAATA
TAATtttacattcttataaaaaacaggGGCTCAGAAATATAAAATCCCCT
TCATGGAGCAGAATAGACTGCAGTTCTCCGATAAGCTTGGAACAAGGAAC
CGCATTCTGTATTTCACGTGGATCATGGCGTTACGTGTATTAGCTGTTCT
TTTGGCCGTAACTCTATCTTGCGCTTACGCTAGAAAAGTTGAGATTTGTG
GTGGAGAGAGTGAGACCTTGAGATGTCCTCAAGGCGGGGAAATTCACATT
CATTCGGCACGCTGGGGCCGACGAGCCAGTTCAACATGCCACACCTACAG
TTGGGTTAAACCATGCAAAATGGCGGATTATACAGATCGTATTCAATCTT
TCTGCAATGGGCACGCCTCTTGTAAAGTCAAAGCTAATGGATATATGTTC
GGATATTTCTCTTGCTACTGGAACGAGCCTTACGCTGAAGTCGTTTACAC
TTGCAATAAAAAAGCCACAACCGCCGCTCCGACAACTGTCGCACCAACTG
AGCCAGCAATCAGACAAGCTTGCGTTGCTGGCAAAGATATGAAATTACTT
CATTGTCCAAGTGGTTCAAAAGTGTTGATCACAGACAGTTATATCTCAAC
AACTCAACCTTGCGAACAAGAAGGAAGTGGAGAAGAACCAGAGgctgTTG
ATTGCGAATCAGAGATTTACGTGCAGCAATATTTCAATGTCATCTGCAAC
ATGAGACGATCTCCGACATGCGTACTGGCCATCAACCAAGCTATGTTCGC
CAAAGAAGGCTTGGAATGCCGTGGATATCATCACTATCTCCATGCTCAAT
ACCAATGTCGCTATTAGCATAATAGATGTTTAAAGAATAACGATTTTTTC
TATACTTTAATCCTTATAGTTATGTTTTTGTTCTCAGAGTTACGCTCCTA
CCATATTGATTGTTATAATATCAGAGATTAATTTACAACAATTtgtgttt
catttttcttgggGGTAAAATATATCTCTGGTGAGAGGGAAATACTATTA
AATGAATACAGGCTCGCTTTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000396:22374..26179-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021890 ID=TCONS_00021890|Name=TCONS_00021890|organism=Clytia hemisphaerica|type=transcript|length=3806bp|location=Sequence derived from alignment at sc0000396:22374..26179- (Clytia hemisphaerica)
GGCGAGGAAAGTAAGTCGAACATAATTACGTCTATTCTAGTCTACAAATA
TAATTTTACATTCTTATAAAAAACAGGGGCTCAGAAATATAAAATCCCCT
TCATGGAGCAGAATAGACTGCAGTTCTCCGATAAGCTTGGAACAAGGAAC
CGCATTCTGTATTTCACGTGGATCATGGCGTTACGTGTATTAGCTGTTCT
TTTGGCCGTAACTCTATCTTGCGCTTACGCTAGAAAAGGTACTTTATCAT
TTTGCCCTCTCTTAAGATATATCAGCTCACTATCGTAAGTGTGACCACAG
AACAAACGTATTCTAAAAAGTTCGCCTTAGTTTCTAAGTTTTTAAAAACA
CGAAGACAAATTTGTACGATTAGTAAAAAAATTGATTTTTATCATTTCAG
TTGAGATTTGTGGTGGAGAGAGTGAGACCTTGAGATGTCCTCAAGGCGGG
GAAATTCACATTCATTCGGCACGCTGGGGCCGACGAGCCAGTTCAACATG
CCACACCTACAGTTGGGTTAAACCATGCAAAATGGCGGATTATACAGATC
GTATTCAATCTTTCTGCAATGGGCACGCCTCTTGTAAAGTCAAAGCTAAT
GGATATATGTTCGGATATTTCTCTTGCTACTGGAACGAGCCTTACGCTGA
AGTCGTTTACACTTGCAATAAAAAAGGTATATTTATATATCTCACGACAT
CTCACAAAGCTTTTTTCAGGCTTCAATGTTGTCTTCTCCCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGCGTACTACATGAAGCTAATCTGCAAATAGTAGCAC
AATTTATAGTTTAGATTATCTGACTTCTAGGTACAAATGTTGAGTGGGAG
TGCAAACAAAAGTTGAAAAATCTTGACATAGAAGCGAAAGAGACGAACTC
TATAGAAGGTTTAAACTTTATAGGAAGTTTATTCACTTAAAGGTGCCAAT
ACACGAAAAATGCAATCAAACTGTGAAAACAAATAACGGATATTTGATTC
AAAGAGAACTTCAAAAAATGCCTCAAACAGGTGCCTCCAAATCCAAACCC
AATCTTCAACAAGTTTTCTATAGGAATCTCATTATTTGAAATAAAAAATT
GCAAGCTCTTTCCGTCGAAGAGTTATATTGAGGCGAGGAAAGTAAGTCGA
ACATAATTACGTCTATTCTAGTCTACAAATATAATTTTACATTCTTATAA
AAAACAGGGGCTCAGAAATATAAAATCCCCTTCATGGAGAAGAATAGACT
GCAGTTCTCCGATAAGCTTGGAACAAGGAACCGCATTCTGTATTTCACGT
GGATCATGGCGTTACGTGTATTAGCTGTTCTTTTGGCCGTAACTCTATCT
TGCGCTTACGCTAGAAAAGGTACTTTATCATTTTGCCCTCTCTTAAGATA
TATCAGCTCACTATCGTAAGTGTGACCACAGAACAAACGTATTCTAAAAA
GTTCGCCTTAGTTTCTAAGTTTTTAAAAACACGAAGACAAATTTGTACGA
TTAGTAAAAAAATTGATTTTTATCATTTCAGTTGAGATTTGTGGTGGAGA
GAGTGAGACCTTGAGATGTCCTCAAGGCGGGGAAATTCACATTCATTCGG
CACGCTGGGGCCGACGAGCCAGTTCAACATGCCACACCTACAGTTGGGTT
AAACCATGCAAAATGGCGGATTATACAGATCGTATTCAATCTTTCTGCAA
TGGGCACGCCTCTTGTAAAGTCAAAGCTAATGGATATATGTTCGGATATT
TCTCTTGCTACTGGAACGAGCCTTACGCTGAAGTCGTTTACACTTGCAAT
AAAAAAGGTATATTTATATATCTCACGACATCTCACAAAGCTTTTTTCAG
GCTTCAATGTTGTCTTCTCCCATGTGACTCGATAAGCTGCATATTTAAGA
CCATTTAAATCATAAAGCTGAGGCGGCGCACTGTACCAACGGTTTTCCCT
TGCGAATATAAAATCAAATGAGCTTTTTCAAGCCTTTGGATTTAAGTCTA
AAATTTTCTCAAAATGCTCTAATTTTCAGCATTTTGTGGGGTTTTGTGTA
ATTTTCTAAGAAGATTTCCTAAAATATTGAGCGCTTTAGAGTCTGCGAAT
TCTTATAATATTCTCAACTTGTTGTTGATCATCAAAGCCTTATGATGTTC
TTATATAGTGTGAAAAAGTGTACCAGTTTATAAACCATCTACAATTACTG
TTCTTTGATTTCTCACTCAGCCACAACCGCCGCTCCGACAACTGTCGCAC
CAACTGAGCCAGCAATCAGACAAGGTAACAAACGGGTGAAAATATAATCA
TTTTTTTTGAAAACGGAGAATACAAAAACTAGAAGATTAATATAACACCC
ACTCCAGACATACAAGGGGTCCGGGAACAACAGGACGAAATTTTTGGACA
CACAGTAAAGGGGATACACTCACGATAACACTTTCTAATAATTTTCTCTT
TAACAAGCTTGCGTTGCTGGCAAAGATATGAAATTACTTCATTGTCCAAG
TGGTTCAAAAGTGTTGATCACAGACAGTTATATCTCAACAACTCAACCTT
GCGAACAAGAAGGAAGTGGAGAAGAACCAGAGGTCAGCTATTCTTTTTGA
GTTCTTTAACTTTTGTTCAATATTTGAATGCTAATATTTTAAAGGAAGGA
ACTTTCGCGGAGAGAAGCTTTCGCGATTTTCACAAATTTCGGGCAAATTT
ACAAAAGTTAATTCCGCGAAATATTCTGAAAACTTAATTCGCGAGAGTTT
ATTCTCGTGAAAAAAAAATACTTTTCCTAAAAATCTGTCTTTCATTATGA
AATTTTCTTTAAAGCAATTTAAACATTAATTTTGAAACCCACTTTAGATT
GAAGAAAGTGAGGTGAAATTCAGCATGGAGGTGCCACCCTTTCTGTCGCT
TCCTTTTACTCCCAAATATTATCTTTAAAGTTTGCCAATTTGCTTATTGA
AAACGTCTAAAATTATTGAAAATTTGTTTTTACTCTATTTAGTTTAGGGA
TTTAATCGGGTTTATTAAGGGTGTTTGAAAACTCAAGGGCGAATATTCTA
AATAACAATGAATATCTTTTTTAGGCTGTTGATTGCGAATCAGAGATTTA
CGTGCAGCAATATTTCAATGTCATCTGCAACATGAGACGATCTCCGACAT
GCGTACTGGCCATCAACCAAGCTATGTTCGCCAAAGAAGGCTTGGAATGC
CGTGGATATCATCACTATCTCCATGCTCAATACCAATGTCGCTATTAGCA
TAATAGATGTTTAAAGAATAACGATTTTTTCTATACTTTAATCCTTATAG
TTATGTTTTTGTTCTCAGAGTTACGCTCCTACCATATTGATTGTTATAAT
ATCAGAGATTAATTTACAACAATTTGTGTTTCATTTTTCTTGGGGGTAAA
ATATATCTCTGGTGAGAGGGAAATACTATTAAATGAATACAGGCTCGCTT
TTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012283XLOC_012283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021890-exon-sc0000396-1575043694:25942..26179TCONS_00021890-exon-sc0000396-1575043694:25942..26179Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1575043694:24023..24298TCONS_00021890-exon-sc0000396-1575043694:24023..24298Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1575043694:23556..23609TCONS_00021890-exon-sc0000396-1575043694:23556..23609Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1575043694:23248..23372TCONS_00021890-exon-sc0000396-1575043694:23248..23372Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1575043694:22374..22755TCONS_00021890-exon-sc0000396-1575043694:22374..22755Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1510915933:25942..26179TCONS_00021890-exon-sc0000396-1510915933:25942..26179Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1510915933:24023..24298TCONS_00021890-exon-sc0000396-1510915933:24023..24298Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1510915933:23556..23609TCONS_00021890-exon-sc0000396-1510915933:23556..23609Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1510915933:23248..23372TCONS_00021890-exon-sc0000396-1510915933:23248..23372Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1510915933:22374..22755TCONS_00021890-exon-sc0000396-1510915933:22374..22755Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1491911889:25942..26179TCONS_00021890-exon-sc0000396-1491911889:25942..26179Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1491911889:24023..24298TCONS_00021890-exon-sc0000396-1491911889:24023..24298Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1491911889:23556..23609TCONS_00021890-exon-sc0000396-1491911889:23556..23609Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1491911889:23248..23372TCONS_00021890-exon-sc0000396-1491911889:23248..23372Clytia hemisphaericaexon
TCONS_00021890-exon-sc0000396-1491911889:22374..22755TCONS_00021890-exon-sc0000396-1491911889:22374..22755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:22374..26179 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124863	0	0	0.386069	0	0	0.0530607	0.049309	0	0	0	0	49.2284	56.1352	0.144016	0	7.5223	10.6275	300.133	344.764	42.4191	42.1475	21.1153	35.5707	124.251	96.1809	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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