TCONS_00021891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021891
Unique NameTCONS_00021891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021891 ID=TCONS_00021891|Name=TCONS_00021891|organism=Clytia hemisphaerica|type=transcript|length=1094bp
CGTCGAAGAGTTATATTGAGGCGAGGAAAGTAAGTCGAACATAATTACGT
CTATTCTAGTCTACAAATATAATtttacattcttataaaaaacaggGGCT
CAGAAATATAAAATCCCCTTCATGGAGCAGAATAGACTGCAGTTCTCCGA
TAAGCTTGGAACAAGGAACCGCATTCTGTATTTCACGTGGATCATGGCGT
TACGTGTATTAGCTGTTCTTTTGGCCGTAACTCTATCTTGCGCTTACGCT
AGAAAAGTTGAGATTTGTGGTGGAGAGAGTGAGACCTTGAGATGTCCTCA
AGGCGGGGAAATTCACATTCATTCGGCACGCTGGGGCCGACGAGCCAGTT
CAACATGCCACACCTACAGTTGGGTTAAACCATGCAAAATGGCGGATTAT
ACAGATCGTATTCAATCTTTCTGCAATGGGCACGCCTCTTGTAAAGTCAA
AGCTAATGGATATATGTTCGGATATTTCTCTTGCTACTGGAACGAGCCTT
ACGCTGAAGTCGTTTACACTTGCAATAAAAAAGCCACAACCGCCGCTCCG
ACAACTGTCGCACCAACTGAGCCAGCAATCAGACAAGCTTGCGTTGCTGG
CAAAGATATGAAATTACTTCATTGTCCAAGTGGTTCAAAAGTGTTGATCA
CAGACAGTTATATCTCAACAACTCAACCTTGCGAACAAGAAGGAAGTGGA
GAAGAACCAGAGgctgTTGATTGCGAATCAGAGATTTACGTGCAGCAATA
TTTCAATGTCATCTGCAACATGAGACGATCTCCGACATGCGTACTGGCCA
TCAACCAAGCTATGTTCGCCAAAGAAGGCTTGGAATGCCGTGGATATCAT
CACTATCTCCATGCTCAATACCAATGTCGCTATTAGCATAATAGATGTTT
AAAGAATAACGATTTTTTCTATACTTTAATCCTTATAGTTATGTTTTTGT
TCTCAGAGTTACGCTCCTACCATATTGATTGTTATAATATCAGAGATTAA
TTTACAACAATTtgtgtttcatttttcttgggGGTAAAATATATCTCTGG
TGAGAGGGAAATACTATTAAATGAATACAGGCTCGCTTTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000396:22374..26198-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021891 ID=TCONS_00021891|Name=TCONS_00021891|organism=Clytia hemisphaerica|type=transcript|length=3825bp|location=Sequence derived from alignment at sc0000396:22374..26198- (Clytia hemisphaerica)
CGTCGAAGAGTTATATTGAGGCGAGGAAAGTAAGTCGAACATAATTACGT
CTATTCTAGTCTACAAATATAATTTTACATTCTTATAAAAAACAGGGGCT
CAGAAATATAAAATCCCCTTCATGGAGCAGAATAGACTGCAGTTCTCCGA
TAAGCTTGGAACAAGGAACCGCATTCTGTATTTCACGTGGATCATGGCGT
TACGTGTATTAGCTGTTCTTTTGGCCGTAACTCTATCTTGCGCTTACGCT
AGAAAAGGTACTTTATCATTTTGCCCTCTCTTAAGATATATCAGCTCACT
ATCGTAAGTGTGACCACAGAACAAACGTATTCTAAAAAGTTCGCCTTAGT
TTCTAAGTTTTTAAAAACACGAAGACAAATTTGTACGATTAGTAAAAAAA
TTGATTTTTATCATTTCAGTTGAGATTTGTGGTGGAGAGAGTGAGACCTT
GAGATGTCCTCAAGGCGGGGAAATTCACATTCATTCGGCACGCTGGGGCC
GACGAGCCAGTTCAACATGCCACACCTACAGTTGGGTTAAACCATGCAAA
ATGGCGGATTATACAGATCGTATTCAATCTTTCTGCAATGGGCACGCCTC
TTGTAAAGTCAAAGCTAATGGATATATGTTCGGATATTTCTCTTGCTACT
GGAACGAGCCTTACGCTGAAGTCGTTTACACTTGCAATAAAAAAGGTATA
TTTATATATCTCACGACATCTCACAAAGCTTTTTTCAGGCTTCAATGTTG
TCTTCTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTACTACATGAAGCT
AATCTGCAAATAGTAGCACAATTTATAGTTTAGATTATCTGACTTCTAGG
TACAAATGTTGAGTGGGAGTGCAAACAAAAGTTGAAAAATCTTGACATAG
AAGCGAAAGAGACGAACTCTATAGAAGGTTTAAACTTTATAGGAAGTTTA
TTCACTTAAAGGTGCCAATACACGAAAAATGCAATCAAACTGTGAAAACA
AATAACGGATATTTGATTCAAAGAGAACTTCAAAAAATGCCTCAAACAGG
TGCCTCCAAATCCAAACCCAATCTTCAACAAGTTTTCTATAGGAATCTCA
TTATTTGAAATAAAAAATTGCAAGCTCTTTCCGTCGAAGAGTTATATTGA
GGCGAGGAAAGTAAGTCGAACATAATTACGTCTATTCTAGTCTACAAATA
TAATTTTACATTCTTATAAAAAACAGGGGCTCAGAAATATAAAATCCCCT
TCATGGAGAAGAATAGACTGCAGTTCTCCGATAAGCTTGGAACAAGGAAC
CGCATTCTGTATTTCACGTGGATCATGGCGTTACGTGTATTAGCTGTTCT
TTTGGCCGTAACTCTATCTTGCGCTTACGCTAGAAAAGGTACTTTATCAT
TTTGCCCTCTCTTAAGATATATCAGCTCACTATCGTAAGTGTGACCACAG
AACAAACGTATTCTAAAAAGTTCGCCTTAGTTTCTAAGTTTTTAAAAACA
CGAAGACAAATTTGTACGATTAGTAAAAAAATTGATTTTTATCATTTCAG
TTGAGATTTGTGGTGGAGAGAGTGAGACCTTGAGATGTCCTCAAGGCGGG
GAAATTCACATTCATTCGGCACGCTGGGGCCGACGAGCCAGTTCAACATG
CCACACCTACAGTTGGGTTAAACCATGCAAAATGGCGGATTATACAGATC
GTATTCAATCTTTCTGCAATGGGCACGCCTCTTGTAAAGTCAAAGCTAAT
GGATATATGTTCGGATATTTCTCTTGCTACTGGAACGAGCCTTACGCTGA
AGTCGTTTACACTTGCAATAAAAAAGGTATATTTATATATCTCACGACAT
CTCACAAAGCTTTTTTCAGGCTTCAATGTTGTCTTCTCCCATGTGACTCG
ATAAGCTGCATATTTAAGACCATTTAAATCATAAAGCTGAGGCGGCGCAC
TGTACCAACGGTTTTCCCTTGCGAATATAAAATCAAATGAGCTTTTTCAA
GCCTTTGGATTTAAGTCTAAAATTTTCTCAAAATGCTCTAATTTTCAGCA
TTTTGTGGGGTTTTGTGTAATTTTCTAAGAAGATTTCCTAAAATATTGAG
CGCTTTAGAGTCTGCGAATTCTTATAATATTCTCAACTTGTTGTTGATCA
TCAAAGCCTTATGATGTTCTTATATAGTGTGAAAAAGTGTACCAGTTTAT
AAACCATCTACAATTACTGTTCTTTGATTTCTCACTCAGCCACAACCGCC
GCTCCGACAACTGTCGCACCAACTGAGCCAGCAATCAGACAAGGTAACAA
ACGGGTGAAAATATAATCATTTTTTTTGAAAACGGAGAATACAAAAACTA
GAAGATTAATATAACACCCACTCCAGACATACAAGGGGTCCGGGAACAAC
AGGACGAAATTTTTGGACACACAGTAAAGGGGATACACTCACGATAACAC
TTTCTAATAATTTTCTCTTTAACAAGCTTGCGTTGCTGGCAAAGATATGA
AATTACTTCATTGTCCAAGTGGTTCAAAAGTGTTGATCACAGACAGTTAT
ATCTCAACAACTCAACCTTGCGAACAAGAAGGAAGTGGAGAAGAACCAGA
GGTCAGCTATTCTTTTTGAGTTCTTTAACTTTTGTTCAATATTTGAATGC
TAATATTTTAAAGGAAGGAACTTTCGCGGAGAGAAGCTTTCGCGATTTTC
ACAAATTTCGGGCAAATTTACAAAAGTTAATTCCGCGAAATATTCTGAAA
ACTTAATTCGCGAGAGTTTATTCTCGTGAAAAAAAAATACTTTTCCTAAA
AATCTGTCTTTCATTATGAAATTTTCTTTAAAGCAATTTAAACATTAATT
TTGAAACCCACTTTAGATTGAAGAAAGTGAGGTGAAATTCAGCATGGAGG
TGCCACCCTTTCTGTCGCTTCCTTTTACTCCCAAATATTATCTTTAAAGT
TTGCCAATTTGCTTATTGAAAACGTCTAAAATTATTGAAAATTTGTTTTT
ACTCTATTTAGTTTAGGGATTTAATCGGGTTTATTAAGGGTGTTTGAAAA
CTCAAGGGCGAATATTCTAAATAACAATGAATATCTTTTTTAGGCTGTTG
ATTGCGAATCAGAGATTTACGTGCAGCAATATTTCAATGTCATCTGCAAC
ATGAGACGATCTCCGACATGCGTACTGGCCATCAACCAAGCTATGTTCGC
CAAAGAAGGCTTGGAATGCCGTGGATATCATCACTATCTCCATGCTCAAT
ACCAATGTCGCTATTAGCATAATAGATGTTTAAAGAATAACGATTTTTTC
TATACTTTAATCCTTATAGTTATGTTTTTGTTCTCAGAGTTACGCTCCTA
CCATATTGATTGTTATAATATCAGAGATTAATTTACAACAATTTGTGTTT
CATTTTTCTTGGGGGTAAAATATATCTCTGGTGAGAGGGAAATACTATTA
AATGAATACAGGCTCGCTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012283XLOC_012283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021891-exon-sc0000396-1575043694:25942..26198TCONS_00021891-exon-sc0000396-1575043694:25942..26198Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1575043694:25504..25779TCONS_00021891-exon-sc0000396-1575043694:25504..25779Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1575043694:23556..23609TCONS_00021891-exon-sc0000396-1575043694:23556..23609Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1575043694:23248..23372TCONS_00021891-exon-sc0000396-1575043694:23248..23372Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1575043694:22374..22755TCONS_00021891-exon-sc0000396-1575043694:22374..22755Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1510915933:25942..26198TCONS_00021891-exon-sc0000396-1510915933:25942..26198Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1510915933:25504..25779TCONS_00021891-exon-sc0000396-1510915933:25504..25779Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1510915933:23556..23609TCONS_00021891-exon-sc0000396-1510915933:23556..23609Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1510915933:23248..23372TCONS_00021891-exon-sc0000396-1510915933:23248..23372Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1510915933:22374..22755TCONS_00021891-exon-sc0000396-1510915933:22374..22755Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1491911889:25942..26198TCONS_00021891-exon-sc0000396-1491911889:25942..26198Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1491911889:25504..25779TCONS_00021891-exon-sc0000396-1491911889:25504..25779Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1491911889:23556..23609TCONS_00021891-exon-sc0000396-1491911889:23556..23609Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1491911889:23248..23372TCONS_00021891-exon-sc0000396-1491911889:23248..23372Clytia hemisphaericaexon
TCONS_00021891-exon-sc0000396-1491911889:22374..22755TCONS_00021891-exon-sc0000396-1491911889:22374..22755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:22374..26198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.171005	0	0	0	0	0	0	0	0	0	1.86277	0.644836	0	0.0720638	0	0	4.96232	4.15417	0	0	0	0	3.00717	5.36766	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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