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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021896 ID=TCONS_00021896|Name=TCONS_00021896|organism=Clytia hemisphaerica|type=transcript|length=1287bp
TGAGAATAAAATTTATCcggaattttctttaaaatatattttaagtttta
ttttaaatattctttgAGATTAAAAGTTAAAACTTTGTAACCAAAACAAA
CTGGTTGGAAGCTCCTAGTTGTTGGTGATCTGTTTGGAAACTTTGGTGGT
TCTAACCAAGTCCTTGAAAGCTGTTCAATAGAGAAATCTTAAAATTCATT
GCTATAAAGGGCCATATAGTATTATTCAAGAGTTTGGTTGAGACAGTTTG
AAGGGTATACCCAATCAAGAAATGGATATTTGGTCGCTGATGTTCATTCT
CTGTTCAACGCTTTCCAGCTTACCAGGTTATACGTTTTCCAAGTCTACAA
ATTCAATTGATAATCTGATCGACCAATTATATAAACGGAGCAAAGATGAg
gttttgctgagtcagcaaaaagtGGAAGTGGAAACAACAAAGGACATCAA
AGAAAGTCATCAATCAATACAACAAATTAACAAACGAAAAGTGTTTGGAA
AGATCATTCAATATATGGATTTGGGGAGCAGTAATACCAACACAAAAATG
ATTGACGATGAGAGCAAAGAGAGGGACCAAAAGCCCGGCCGAAATTTACG
AGCTATGTTTACATGTGGTATTTGGGGCTGTGGAAGAAGTACAGCTCTTA
GAGGGAAAAAACAAGTGAAAGAAAATGTCGAAGAAAAGAAGAGCTTGAAA
AATGATGTGATGAATGAAATTAATGAATTGATTCAGAAATTATTTTAGAA
GAACTGTGAAAAACGGAGGAGTGTGAAAAAAAGTGTGGCTTAGTATGTGG
TATCCCAGTTTATTTTGTCTAGAAATAAACCACAATACTTTATATTCCTT
ACCGCAGGTTCTCCGTAATTAATGATTAGATTCAATACGAATAACAAAAT
TCCAccgtctctcaaaggggtacgaaaaccattaaaaagcaatttgagtc
tctgtaagggtccaaaattcacgaaaatcaacAATCGACAACAATCGagt
gaaaatcaacaaaacgtTTGGCAAAAGTgtctctaagggtcccaaaaacg
taaatttttcttctctctctaagggtcgaatttcgatttttggttcggac
atacccgtcagcttGCAAACAATAGTACCCCCGGGTAAAATTCTCATTTG
GACCCTAAATCAACGTCAAACTATCTTGAGAGTTTTTGTtatttaacgtt
tttcaaaatgtaaagAAGTATAATATAAAAGTACTGAAATCGACTACgga
tgaatattttttgaaagtttattcatatactctcagg Run BLAST on NCBI protein sequence of TCONS_00021896-protein >TCONS_00021896-protein ID=TCONS_00021896-protein|Name=TCONS_00021896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MDIWSLMFILCSTLSSLPGYTFSKSTNSIDNLIDQLYKRSKDEVLLSQQK
VEVETTKDIKESHQSIQQINKRKVFGKIIQYMDLGSSNTNTKMIDDESKE
RDQKPGRNLRAMFTCGIWGCGRSTALRGKKQVKENVEEKKSLKNDVMNEI
NELIQKLF Run BLAST on NCBI transcript from alignment at sc0000396:99736..101349- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021896 ID=TCONS_00021896|Name=TCONS_00021896|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0000396:99736..101349- (Clytia hemisphaerica)
TGAGAATAAAATTTATCCGGAATTTTCTTTAAAATATATTTTAAGTTTTA
TTTTAAATATTCTTTGAGATTAAAAGTTAAAACTTTGTAACCAAAACAAA
CTGGTTGGAAGCTCCTAGTTGTTGGTGATCTGTTTGGAAACTTTGGTGGT
TCTAACCAAGTCCTTGAAAGCTGTTCAATAGAGAAATCTTAAAATTCATT
GCTATAAAGGGCCATATAGTATTATTCAAGAGTTTGGTTGAGACAGTTTG
AAGGGTATACCCAATCAAGAAATGGATATTTGGTCGCTGATGTTCATTCT
CTGTTCAACGCTTTCCAGCTTACCAGGTAACAAGTTATCCTTCTGAAGTT
ATTGATCGAAACAAAGTCGAAGAAAAGCATCATTTAATCATTTTGAGAAT
CTCTGGAAGTAAAGCCCTATCTTAAAAAAATCTTTAGGAAGACTCAAGAA
TAGCAACTTTAACGCTTTTAGCGTCAGAGCTTTTTGAAACAAAATCCGAA
TTTTCAAAGCAGCATCTTTTTTCTAATTTCATGCTCTTTACAACAATGGC
TACTGAAGTTGTCCAAGAATCTCTTTGGGACTCTGATGGGATTGAAAAGA
GTTTTATGAAATACTGAAATAAAATAAGCATTTATTACTTTTATAATCTC
TAGGTTATACGTTTTCCAAGTCTACAAATTCAATTGATAATCTGATCGAC
CAATTATATAAACGGAGCAAAGATGAGGTTTTGCTGAGTCAGCAAAAAGT
GGAAGTGGAAACAACAAAGGACATCAAAGAAAGTCATCAATCAATACAAC
AAATTAACAAACGAAAAGTGTTTGGAAAGATCATTCAATATATGGATTTG
GGGAGCAGTAATACCAACACAAAAATGATTGACGATGAGAGCAAAGAGAG
GGACCAAAAGCCCGGCCGAAATTTACGAGCTATGTTTACATGTGGTATTT
GGGGCTGTGGAAGAAGTACAGCTCTTAGAGGGAAAAAACAAGTGAAAGAA
AATGTCGAAGAAAAGAAGAGCTTGAAAAATGATGTGATGAATGAAATTAA
TGAATTGATTCAGAAATTATTTTAGAAGAACTGTGAAAAACGGAGGAGTG
TGAAAAAAAGTGTGGCTTAGTATGTGGTATCCCAGTTTATTTTGTCTAGA
AATAAACCACAATACTTTATATTCCTTACCGCAGGTTCTCCGTAATTAAT
GATTAGATTCAATACGAATAACAAAATTCCACCGTCTCTCAAAGGGGTAC
GAAAACCATTAAAAAGCAATTTGAGTCTCTGTAAGGGTCCAAAATTCACG
AAAATCAACAATCGACAACAATCGAGTGAAAATCAACAAAACGTTTGGCA
AAAGTGTCTCTAAGGGTCCCAAAAACGTAAATTTTTCTTCTCTCTCTAAG
GGTCGAATTTCGATTTTTGGTTCGGACATACCCGTCAGCTTGCAAACAAT
AGTACCCCCGGGTAAAATTCTCATTTGGACCCTAAATCAACGTCAAACTA
TCTTGAGAGTTTTTGTTATTTAACGTTTTTCAAAATGTAAAGAAGTATAA
TATAAAAGTACTGAAATCGACTACGGATGAATATTTTTTGAAAGTTTATT
CATATACTCTCAGG Coding sequence (CDS) from alignment at sc0000396:99736..101349- >TCONS_00021896 ID=TCONS_00021896|Name=TCONS_00021896|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000396:99736..101349- (Clytia hemisphaerica)
GTTATACGTTTTCCAAGTCTACAAATTCAATTGATAATCTGATCGACCAA
TTATATAAACGGAGCAAAGATGAGGTTTTGCTGAGTCAGCAAAAAGTGGA
AGTGGAAACAACAAAGGACATCAAAGAAAGTCATCAATCAATACAACAAA
TTAACAAACGAAAAGTGTTTGGAAAGATCATTCAATATATGGATTTGGGG
AGCAGTAATACCAACACAAAAATGATTGACGATGAGAGCAAAGAGAGGGA
CCAAAAGCCCGGCCGAAATTTACGAGCTATGTTTACATGTGGTATTTGGG
GCTGTGGAAGAAGTACAGCTCTTAGAGGGAAAAAACAAGTGAAAGAAAAT
GTCGAAGAAAAGAAGAGCTTGAAAAATGATGTGATGAATGAAATTAATGA
ATTGATTCAGAAATTATTTTAGATGGATATTTGGTCGCTGATGTTCATTC
TCTGTTCAACGCTTTCCAGCTTACCAGGTTATACGTTTTCCAAGTCTACA
AATTCAATTGATAATCTGATCGACCAATTATATAAACGGAGCAAAGATGA
GGTTTTGCTGAGTCAGCAAAAAGTGGAAGTGGAAACAACAAAGGACATCA
AAGAAAGTCATCAATCAATACAACAAATTAACAAACGAAAAGTGTTTGGA
AAGATCATTCAATATATGGATTTGGGGAGCAGTAATACCAACACAAAAAT
GATTGACGATGAGAGCAAAGAGAGGGACCAAAAGCCCGGCCGAAATTTAC
GAGCTATGTTTACATGTGGTATTTGGGGCTGTGGAAGAAGTACAGCTCTT
AGAGGGAAAAAACAAGTGAAAGAAAATGTCGAAGAAAAGAAGAGCTTGAA
AAATGATGTGATGAATGAAATTAATGAATTGATTCAGAAATTATTTTAGA
TGGATATTTGGTCGCTGATGTTCATTCTCTGTTCAACGCTTTCCAGCTTA
CCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021896-exon-sc0000396-1575043694:101024..101349 | TCONS_00021896-exon-sc0000396-1575043694:101024..101349 | Clytia hemisphaerica | exon |
| TCONS_00021896-exon-sc0000396-1575043694:99736..100696 | TCONS_00021896-exon-sc0000396-1575043694:99736..100696 | Clytia hemisphaerica | exon |
| TCONS_00021896-exon-sc0000396-1510915933:101024..101349 | TCONS_00021896-exon-sc0000396-1510915933:101024..101349 | Clytia hemisphaerica | exon |
| TCONS_00021896-exon-sc0000396-1510915933:99736..100696 | TCONS_00021896-exon-sc0000396-1510915933:99736..100696 | Clytia hemisphaerica | exon |
| TCONS_00021896-exon-sc0000396-1491911889:101024..101349 | TCONS_00021896-exon-sc0000396-1491911889:101024..101349 | Clytia hemisphaerica | exon |
| TCONS_00021896-exon-sc0000396-1491911889:99736..100696 | TCONS_00021896-exon-sc0000396-1491911889:99736..100696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:99736..101349 - |
Blast
The following BLAST results are available for this feature:
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