TCONS_00021900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021900
Unique NameTCONS_00021900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021900 ID=TCONS_00021900|Name=TCONS_00021900|organism=Clytia hemisphaerica|type=transcript|length=1763bp
GCGTAATTTGCTTACAACAGTATTCAGTGTAAAATTTACTGAACCTGAAA
AATCACCGAAATGGTCTGGATGCCAATGTTGGCTGCCCGGAATGCCAGGG
CCAATCTGATGAGGAAGAAAGAGTTAAAAGGACCAGTACACAGTCAACAG
AGTTTACGAAATGTTTCATCAGCCACGATATCCATGCTCAAGATTCAAGG
CTTACCAGCTGGTCCAGTCAAAGAAGAACAAATAAATGCTGTTCAAAATC
TATTCAAAAATTTAGGTGAAGCACCATCCATCATTGATGGTCGACTAGAA
GTTGGAGACGATATTTGGGATGAATTTGAAGattccgaaaaattgaaaaa
taatctgGAAATGTTATTGGTGTGCAAGAAAATGAACCTGCATTTTGAAG
TTGCCAGGAGTCACAACCTACCGGGCTTCTTGGTAATTCCGAAATTCCAT
TGTATGAAATGTTATGAGTCATGGCTTACTAATCATCAAGTACCAACACA
CTGCGAAAACCCTGAAGAACCAATACGAGGTGCCCCAATTGCTTTGGATG
AAAGAGCACAGATATTTCTAAAAGATCAAAATGTCAGCTATATTGAAATA
CAAGGGAATCAGGCTTTGATGAATCGAAAATTTCGTAAACCGACTTTAAC
ATCAAGTGCTTTACGAGCTAGAATATTGCTCTCAAATCGGGACTCAAGGA
CCCGGCACGTCGACTCCATAACAGGAGTTGAGACAGTACCGACAAGACCT
ACGACAGGGAAACAAACGACAACACCAAAGCGACCTGACAGTGAGGCTAG
TGCAATTGAAATTGCAAGCGATGAAAAAAGTCATCGTCCGTCACCCTTAC
TGCTAGCACGATCTCACGATGAAGATTCAACTCACGGCATaacggatgtt
cttataaagtccAGTTACAGTGGCCCTAATGATGGGATGAGGAAATATGG
TGGTTTAACTAACAGCCAGGCTAAGATCTTTGTCGATAAGAACAGTTTGA
CAAAAGTTGAAGAAGCAGAACAGAGACAAAAACATTATAATAGTGCTAGT
AGAAATACAACATCACCTTTAGctaaaaaatcaagtaaagATGGTCTCTT
TGGAAAACGAGCCTCCAACAAAAAGAATAAGAGGCAGCGTGGTAGCAAGG
GCCAAGCGCGGAAGAATGGATCCAAGACACGTCTGGTGGATAAAACAGGC
GCCACTGAAGAAACCTTGGTGAATGTGAGCGATGAAGCCATGCCAAAAGG
GGAATACAGTTATCGAAGAATGCTTATGGGTGGCGCTTCTAAAGGTCAAA
TGGGCGCAGGGGAGAGACGCCCATCAGGTGTCAGCAACAACTTGATGACT
CTCGATCTCGGTGATGAAGCAAAAGATCCACGAGCGTCCACCAATAAAGC
CAATGCCAACATAAGAGAAAGAAAGACTCGAAAGAATTCGACCAATACAG
CACCCGGTGCAAGGCGGGATTCCTTAGACAGTGCAGCAAGTCGTTCAAGT
CAACATGGTGGATCTCGAAGAGGTAGTCTCCCTGACAACGAGAAACAGCA
GTATAAAGTACAAGGTCAAGGGCGAAATATTCAGCGTCAAGATGGGAAGC
GAGGTGTAGGTTTTACTTACAATACATCCAGTAATGCACTTGGTTTAGGG
TTTTCTCAAACACCTAGTTCTCAAGCCGCGTCACATGGCAATGAGGGGTC
TGGATCTGAGGGTGAGGAAAATGACGAGGATGCTGACTCGTCAAAAACTC
AATCACGTGCACG
Run BLAST on NCBI

transcript from alignment at sc0000396:105345..108816-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021900 ID=TCONS_00021900|Name=TCONS_00021900|organism=Clytia hemisphaerica|type=transcript|length=3472bp|location=Sequence derived from alignment at sc0000396:105345..108816- (Clytia hemisphaerica)
GCGTAATTTGCTTACAACAGTATTCAGTGTAAAATTTACTGAACCTGAAA
AATCACCGAAATGGTCTGGATGCCAATGTTGGCTGCCCGGAATGCCAGGG
CCAATCTGATGAGGAAGAAAGTAAGGGAGTATAATTTTCCTGGCAAATTT
TTACAAGAAAGCCGGTAAAACCATTCAAATAGAACCGTTAAAATTCTTTA
CCAGCTGAGTTTTATAAAGAGGATATATCTTGCAGGTTCAATTTTCATCC
AAAGTTTGGGGAATGGGAGAATTCGAATTTGAATTTTGGGTCCCAGATAC
AGTCGCATTCAGATCAAGTGCCCCTCGGTACGAAGATCTATTGTGTCAAT
TTTTGTATGTTTCACAAAAACAGTTTATTCAAATTTTTTACTTCAATAGG
AGTTAAAAGGACCAGTACACAGTCAACAGAGTTTACGAAATGTTTCATCA
GCCACGATATCCATGCTCAAGATTCAAGGCTTACCAGCTGGTCCAGTCAA
AGAAGAACAAATAAATGCTGTTCAAAATCTATTCAAAAATTTAGTAAGTT
TCGTTTAGTCACTGCCCAGATGGCACACAACGTCCAAACAACGTCCATCT
GACATTCANTGTCACTGCCCAGACGGCACCCAACATCCAAACAACGTCCA
TGTAACATTCATAACGTCCAAATGAAGTTATTTGAACGTTAAAACAACGT
TGTGTGTCAGCTGGGTGTATTATCCATTTTTATTTTGAGCTATCTTTGGG
AGGAAAAGTATCTGCCTCAAATAAATCACCCAAACTGAGTAGGGGAGGGG
TTGCACTCTTACGGTGTGACGGAATTGGCCCTTTTTAATACGGTGTTACG
GGAGGGATTTGACGAAAAAAGTGACGTGGGAAAACGGTATTTTAAAATCA
GACGGTGACGGTATTTAGCGTTATTTTTTGTCATTATGGCGGTGTTTTAA
CCTCTATAAACCGGTGTAACGTTTTTATCATTTTTTTCAATTTTTGGGAT
TCCGGGATTCAGCAAAGATTTTGACGGGAAAACAAACCCCTACGAACCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCTGAGTA
AAGGGAGAATGAAAAATTCCTACCATTAAAAAGAAATACACTGGTATTTT
TATTTATTATATCTATCTAATTGCATTTTGGATGATCGATTTTCTATCGA
AACTGGCAAATCACCAGTTTATAACCAACTTAATATTTGGTCCATTTGAC
TTACCCCACTTTGAAATTCTCACCAATTCAATGACAGTGAGACAGGGGTG
TTTTTTGAATATCACAACATTATATGCAGGGTGAAGCACCATCCATCATT
GATGGTCGACTAGAAGTTGGAGACGATATTTGGGATGAATTTGAAGATTC
CGAAAAATTGAAAAATAATCTGGAAATGTTATTGGTGTGCAAGAAAATGA
ACCTGCATTTTGAAGTAAGCATTTTATTCAACAGTATTAGTTAGGCTTGT
GGACATTCGCACAAAATTCTCTTTCTAACCACTGCATTTTAAATTGAATA
CCATGTTTTATTGGATAAATTATGCAAAGGCTACATTACTGGTCTAAACG
CCCAAGGATATGTGGCACCAAGCCAAGAAGACTAATCCCAGTCGTTCTGG
TGTAAAGTGTCAACAACATTAAGTGGGGTTTAAAACACATAATCTAATAT
TTTTTAGGTTGCCAGGAGTCACAACCTACCGGGCTTCTTGGTAATTCCGA
AATTCCATTGTATGAAATGTTATGAGTCATGGCTTACTAATCATCAAGTA
CCAACACACTGCGAAAACCCTGAAGAACCAATACGAGGTGCCCCAATTGC
TTTGGATGAAAGAGCACAGATATTTCTAAAAGATCAAAATGTCAGCTATA
TTGAAATACAAGGGAATCAGGCTTTGATGAATCGAAAATTTCGTAAACCG
ACTTTAACATCAAGTGCTTTACGAGCTAGAATATTGCTCTCAAATCGGGA
CTCAAGGACCCGGCACGTCGACTCCATAACAGGAGTTGAGACAGTACCGA
CAAGACCTACGACAGGGAAACAAACGACAACACCAAAGCGACCTGACAGT
GAGGCTAGTGCAATTGAAATTGCAAGCGATGAAAAAAGTCATCGTCCGTC
ACCCTTACTGCTAGCACGATCTCACGATGAAGATTCAACTCACGGCATAA
CGGATGTTCTTATAAAGTCCAGTTACAGTGGCCCTAATGATGGGATGAGG
AAATATGGTGGTTTAACTAACAGCCAGGCTAAGATCTTTGTCGATAAGAA
CAGTTTGACAAAAGTTGAAGAAGCAGAACAGAGACAAAAACATTATAATA
GTGCTAGTAGAAATACAACATCACCTTTAGCTAAAAAATCAAGTAAAGAT
GGTCTCTTTGGAAAACGAGCCTCCAACAAAAAGAATAAGAGGCAGCGTGG
TAGCAAGGGCCAAGCGCGGAAGAATGGATCCAAGACACGTCTGGTGGATA
AAACAGGCGCCACTGAAGAAACCTTGGTGAATGTGAGCGATGAAGCCATG
CCAAAAGGGGAATACAGTTATCGAAGAATGCTTATGGGTGGCGCTTCTAA
AGGTAAGTTTCGTTGAAGATTCGTTCAGTATGCAATAATTTCCTTCCAAT
ACTAAAATGATAGGATTATCACCGTCTTTGTTGTCTTTTTAACCCGGTAT
ATGAGAAACATGAGGAGAATTTGAGCTACTGGAGGGTGCAATATTCATGA
AATCATAGCCAGTCTCTTTATTCACTTTTTAAAGATTTCTACAGTAAAAT
GTATCAGTGAAATGGAAGATTTTTGCACATTGGCCAACATTGTTCCTACG
TAGTGCAGTTAACAGAAATACAGATCACTTCAACGGATCTTTACTTCTTT
TAGGTCAAATGGGCGCAGGGGAGAGACGCCCATCAGGTGTCAGCAACAAC
TTGATGACTCTCGATCTCGGTGATGAAGCAAAAGATCCACGAGCGTCCAC
CAATAAAGCCAATGCCAACATAAGAGAAAGAAAGACTCGAAAGAATTCGA
CCAATACAGCACCCGGTGCAAGGCGGGATTCCTTAGACAGTGCAGCAAGT
CGTTCAAGTCAACATGGTGGATCTCGAAGAGGTAGTCTCCCTGACAACGA
GAAACAGCAGTATAAAGTACAAGGTCAAGGGCGAAATATTCAGCGTCAAG
ATGGGAAGCGAGGTGTAGGTTTTACTTACAATACATCCAGTAATGCACTT
GGTTTAGGGTTTTCTCAAACACCTAGTTCTCAAGCCGCGTCACATGGCAA
TGAGGGGTCTGGATCTGAGGGTGAGGAAAATGACGAGGATGCTGACTCGT
CAAAAACTCAATCACGTGCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012287XLOC_012287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021900-exon-sc0000396-1575043694:108697..108816TCONS_00021900-exon-sc0000396-1575043694:108697..108816Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1575043694:108274..108417TCONS_00021900-exon-sc0000396-1575043694:108274..108417Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1575043694:107253..107387TCONS_00021900-exon-sc0000396-1575043694:107253..107387Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1575043694:106115..107009TCONS_00021900-exon-sc0000396-1575043694:106115..107009Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1575043694:105345..105813TCONS_00021900-exon-sc0000396-1575043694:105345..105813Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1510915933:108697..108816TCONS_00021900-exon-sc0000396-1510915933:108697..108816Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1510915933:108274..108417TCONS_00021900-exon-sc0000396-1510915933:108274..108417Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1510915933:107253..107387TCONS_00021900-exon-sc0000396-1510915933:107253..107387Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1510915933:106115..107009TCONS_00021900-exon-sc0000396-1510915933:106115..107009Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1510915933:105345..105813TCONS_00021900-exon-sc0000396-1510915933:105345..105813Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1491911889:108697..108816TCONS_00021900-exon-sc0000396-1491911889:108697..108816Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1491911889:108274..108417TCONS_00021900-exon-sc0000396-1491911889:108274..108417Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1491911889:107253..107387TCONS_00021900-exon-sc0000396-1491911889:107253..107387Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1491911889:106115..107009TCONS_00021900-exon-sc0000396-1491911889:106115..107009Clytia hemisphaericaexon
TCONS_00021900-exon-sc0000396-1491911889:105345..105813TCONS_00021900-exon-sc0000396-1491911889:105345..105813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:105345..108816 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0880545	0	0	0	0	0.0304092	0.0339029	0	0	0	0	0	0	0.469316	0	0	0	0.0192341	0	0	0	0	0.0321661	0.102086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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