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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021907 ID=TCONS_00021907|Name=TCONS_00021907|organism=Clytia hemisphaerica|type=transcript|length=1460bp
GCAGTAAGGAAAATCATGAAATgccaaaaaatcttttcttgGAGCAAAAA
CTATACATTTCGAATGACATCTTAAATAACATTATGGGTattatatatga
aaaaaataaatataattttaaaataaataatgaATAAAGTACAAAAAATA
TTCCCTTATGTCGGGAGGCTAGGTTTGGCAGATGAGAGGTATGTGgacgg
acgggacctccgagcgaaaaccgacccttagagagaccaaattatTAGTG
GAAAAGTGCCCCTTAGGCAGGAGGACATTTCTTGAATATTTTTCTTCCAT
TTGACGAGTCCATAATTTGACTGACATTAATAACAAGTTTACGTATTGGC
ACTTTTGAGAACGGTAGTGTGACTGAAGTGATTttgaataacccgcagtt
ttgacccgcaaaatagAGGACGGTAAAAGCTGATTTGCCAGGATTTGCTG
TTGTTCTCAGCCAGCCAGGAAAACACAGATACACTAACACCATGCATACA
GTAAACTCACATTTAGCTGAATTGAGTTCCCATTTGAAGAGCCTAAAAAT
ACATTTTGCTAAAATCCAATTTCGCTATATACTATTGAACAGTTATCGTC
ACTGTCTTCTTGGGCGGCTGTGAGACGAGAAAGACTTTATCATTCGCGTA
CCACAGAGAGTGTGTCTTTTCTGAAAAGCTTGGGATAGCGTCTCTATCTT
TTAATTGATCAAATATCTGTTGATCAAACCAACTTAATTTATTTGTCAAA
TCtgcaatatcttttttcaagtctttattttcagtttgaagtttaTGTAA
GTTCGATTCTAACGATTCTAAACCTGTATCGAGATGATCTATTTGTTGTA
TTTTACGTTTACGACAGTTGCGAGCTGCTATTTTATTCTTGAATTTACGC
CGTATATCACGAGCTACGTGGACTCTCATTTCGTCTAGCTGAAGAATAAG
ATCGTTGAATTTAGAAACAGGCATACGTCCAATTTGATCACGCGTGTATG
GGAAATCTCTCCAAAGAATATTTTGATTCTTCGCTTTCTCGTGTTCATTC
TCATAAACGTTTCCCGGTTTACAGTCTGAATCAGAGCCCTCTGGTAAAGA
TCTTTTGATTATCACAACATCTTTTTTACCTATGTTATAAAGACTTTCTG
GTGTGATTGTGAAGCAATCATCCGATGGTGATATATAGACTCTTCTGATC
GGCTGTTGTACGATACTCGATACGTTTTGTCGATAATTGATATTTTCTGG
ACAAGGTTGACTAAGAGAGCATCTTTTTGGAGAGAAGTTTTCTTGTCTGT
TAGGACAACACGTGGGAATAAACGAAAGAGGATCTTTCATTGGTATGTGA
GTGTTTGTTTGTGAAAGGTCGTTATTTCTGTTCTTTGTGTTGGTGTTATG
TTCAATTGAACTTTCGTTACCAGATTCATTGTGGTTCCTCTTTAACGTAT
TCGTTTGATC Run BLAST on NCBI protein sequence of TCONS_00021907-protein >TCONS_00021907-protein ID=TCONS_00021907-protein|Name=TCONS_00021907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
DQTNTLKRNHNESGNESSIEHNTNTKNRNNDLSQTNTHIPMKDPLSFIPT
CCPNRQENFSPKRCSLSQPCPENINYRQNVSSIVQQPIRRVYISPSDDCF
TITPESLYNIGKKDVVIIKRSLPEGSDSDCKPGNVYENEHEKAKNQNILW
RDFPYTRDQIGRMPVSKFNDLILQLDEMRVHVARDIRRKFKNKIAARNCR
KRKIQQIDHLDTGLESLESNLHKLQTENKDLKKDIADLTNKLSWFDQQIF
DQLKDRDAIPSFSEKTHSLWYANDKVFLVSQPPKKTVTITVQ Run BLAST on NCBI transcript from alignment at sc0000396:143816..145275 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021907 ID=TCONS_00021907|Name=TCONS_00021907|organism=Clytia hemisphaerica|type=transcript|length=1460bp|location=Sequence derived from alignment at sc0000396:143816..145275 (Clytia hemisphaerica)
GATCAAACGAATACGTTAAAGAGGAACCACAATGAATCTGGTAACGAAAG
TTCAATTGAACATAACACCAACACAAAGAACAGAAATAACGACCTTTCAC
AAACAAACACTCACATACCAATGAAAGATCCTCTTTCGTTTATTCCCACG
TGTTGTCCTAACAGACAAGAAAACTTCTCTCCAAAAAGATGCTCTCTTAG
TCAACCTTGTCCAGAAAATATCAATTATCGACAAAACGTATCGAGTATCG
TACAACAGCCGATCAGAAGAGTCTATATATCACCATCGGATGATTGCTTC
ACAATCACACCAGAAAGTCTTTATAACATAGGTAAAAAAGATGTTGTGAT
AATCAAAAGATCTTTACCAGAGGGCTCTGATTCAGACTGTAAACCGGGAA
ACGTTTATGAGAATGAACACGAGAAAGCGAAGAATCAAAATATTCTTTGG
AGAGATTTCCCATACACGCGTGATCAAATTGGACGTATGCCTGTTTCTAA
ATTCAACGATCTTATTCTTCAGCTAGACGAAATGAGAGTCCACGTAGCTC
GTGATATACGGCGTAAATTCAAGAATAAAATAGCAGCTCGCAACTGTCGT
AAACGTAAAATACAACAAATAGATCATCTCGATACAGGTTTAGAATCGTT
AGAATCGAACTTACAtaaacttcaaactgaaaataaagacttgaaaaaag
atattgcaGATTTGACAAATAAATTAAGTTGGTTTGATCAACAGATATTT
GATCAATTAAAAGATAGAGACGCTATCCCAAGCTTTTCAGAAAAGACACA
CTCTCTGTGGTACGCGAATGATAAAGTCTTTCTCGTCTCACAGCCGCCCA
AGAAGACAGTGACGATAACTGTTCAATAGTATATAGCGAAATTGGATTTT
AGCAAAATGTATTTTTAGGCTCTTCAAATGGGAACTCAATTCAGCTAAAT
GTGAGTTTACTGTATGCATGGTGTTAGTGTATCTGTGTTTTCCTGGCTGG
CTGAGAACAACAGCAAATCCTGGCAAATCAGCTTTTACCGTCCTctattt
tgcgggtcaaaactgcgggttattcaaAATCACTTCAGTCACACTACCGT
TCTCAAAAGTGCCAATACGTAAACTTGTTATTAATGTCAGTCAAATTATG
GACTCGTCAAATGGAAGAAAAATATTCAAGAAATGTCCTCCTGCCTAAGG
GGCACTTTTCCACTAataatttggtctctctaagggtcggttttcgctcg
gaggtcccgtccgtcCACATACCTCTCATCTGCCAAACCTAGCCTCCCGA
CATAAGGGAATATTTTTTGTACTTTATtcattatttattttaaaattata
tttatttttttcatatataatACCCATAATGTTATTTAAGATGTCATTCG
AAATGTATAGTTTTTGCTCcaagaaaagattttttggcATTTCATGATTT
TCCTTACTGC Coding sequence (CDS) from alignment at sc0000396:143816..145275 >TCONS_00021907 ID=TCONS_00021907|Name=TCONS_00021907|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at sc0000396:143816..145275 (Clytia hemisphaerica)
GATCAAACGAATACGTTAAAGAGGAACCACAATGAATCTGGTAACGAAAG
TTCAATTGAACATAACACCAACACAAAGAACAGAAATAACGACCTTTCAC
AAACAAACACTCACATACCAATGAAAGATCCTCTTTCGTTTATTCCCACG
TGTTGTCCTAACAGACAAGAAAACTTCTCTCCAAAAAGATGCTCTCTTAG
TCAACCTTGTCCAGAAAATATCAATTATCGACAAAACGTATCGAGTATCG
TACAACAGCCGATCAGAAGAGTCTATATATCACCATCGGATGATTGCTTC
ACAATCACACCAGAAAGTCTTTATAACATAGGTAAAAAAGATGTTGTGAT
AATCAAAAGATCTTTACCAGAGGGCTCTGATTCAGACTGTAAACCGGGAA
ACGTTTATGAGAATGAACACGAGAAAGCGAAGAATCAAAATATTCTTTGG
AGAGATTTCCCATACACGCGTGATCAAATTGGACGTATGCCTGTTTCTAA
ATTCAACGATCTTATTCTTCAGCTAGACGAAATGAGAGTCCACGTAGCTC
GTGATATACGGCGTAAATTCAAGAATAAAATAGCAGCTCGCAACTGTCGT
AAACGTAAAATACAACAAATAGATCATCTCGATACAGGTTTAGAATCGTT
AGAATCGAACTTACAtaaacttcaaactgaaaataaagacttgaaaaaag
atattgcaGATTTGACAAATAAATTAAGTTGGTTTGATCAACAGATATTT
GATCAATTAAAAGATAGAGACGCTATCCCAAGCTTTTCAGAAAAGACACA
CTCTCTGTGGTACGCGAATGATAAAGTCTTTCTCGTCTCACAGCCGCCCA
AGAAGACAGTGACGATAACTGTTCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021907-exon-sc0000396-1491911889:143816..145275 | TCONS_00021907-exon-sc0000396-1491911889:143816..145275 | Clytia hemisphaerica | exon |
| TCONS_00021907-exon-sc0000396-1510915933:143816..145275 | TCONS_00021907-exon-sc0000396-1510915933:143816..145275 | Clytia hemisphaerica | exon |
| TCONS_00021907-exon-sc0000396-1575043694:143816..145275 | TCONS_00021907-exon-sc0000396-1575043694:143816..145275 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:143816..145275 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | DNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00021907 vs. Swiss-Prot (Human)
Match: NF2L1 (Nuclear factor erythroid 2-related factor 1 OS=Homo sapiens GN=NFE2L1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 5.702e-18 Identity = 46/129 (35.66%), Postives = 79/129 (61.24%), Query Frame = -1
Query: 624 FPYTRDQIGRMPVSKFNDLI--LQLDEMRVHVARDIRRKFKNKIAARNCRKRKIQQIDHLDTGLESLESNLHKLQTENKDLKKDIADLTNKLSWFDQQIFDQLKDRDAIPSFSEKTHSLWYANDKVFLV 1004
P+T D+I +PV +FN+L+ QL E ++ + RDIRR+ KNK+AA+NCRKRK+ I +L+ +E L+ + +L E + + + + K+ Q++F +L+D + P +S ++L YA D L+
Sbjct: 623 IPFTNDKIINLPVEEFNELLSKYQLSEAQLSLIRDIRRRGKNKMAAQNCRKRKLDTILNLERDVEDLQRDKARLLREKVEFLRSLRQMKQKVQSLYQEVFGRLRDENGRP-YSPSQYALQYAGDGSVLL 750
The following BLAST results are available for this feature:
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