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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021917 ID=TCONS_00021917|Name=TCONS_00021917|organism=Clytia hemisphaerica|type=transcript|length=1602bp
cgaattttgaatttgataacTATTTTCATAATATTGTCTATCATTGCTgC
AAGGGGAGGGAATGACAGGCCCATATTTCCAACACAACATATACAATATG
AGCAGCGAACCACATTTCCGGTCTGAAAGTCCAATTCCTCGTAGTCCACG
ATTCGGTAGTTTACGACGACGAAAACGCATCGACCGAGAATATTTTGATG
ATACGAGTGAAGGCTCGGATGGGAGGACGAGTTCCGACGAATATGAATCT
TCATCAAATCAAACATCGAAAAAAATGGACGATAATAACAACACAAATCA
AAAGAATCGAAAAAACAGTCATTTTGCTTTTAGTAATGTTaagaaaaaga
ttacgtcaaCTTTTCAGCGTCGGCATTCTGTGTCAATGCACCCTCCCTCA
GCGACAGTTCAAGGTAAACAATTACCGATTCGACGATCGTCAACGACCGG
AAATCAATCACCAAGACTTTTACGTCAATCTTCGTTTGATGAGAGCCATA
CCGCCGTACATAAACGTAAAACGTCGCTACGACGACAAGTTACCATGGCA
GCTGTACGTTTACACGAACAAAGTCAAGTCAGCGGTAGTAACCCAATGTT
AGAcagaattttacaaaaaagcCAATTTCAACTTGAATCAAGTTCCTCTA
CACCGGATATTAAATCACATTTATCTTTGAAAAAGAcacatttaaaaaca
tttaaaattcaTATACTTGGAAGCAAGTCCGTCGGAAAAACAGCTCTGAC
GGTGCGTTTTCTAACGGGAAGATACATTCACGAATATAAATCAGCAGCAG
AAGAAACATACACACGTGTGATGAAatatgaagatgaagaagtcaATGTT
AAAATACTCATCAATGATATTGAATCTATGGAAAATGACATTGAACTTGG
TCAAAATTCTGGCATCATGATTTTATACTCCATCGTTGACCGCACCTCAT
ATGATTATgcgaaatttgttttaaattatTTATCAGAGAACAATATAACT
GGTTACTACCCTGTCATGCTAATGGGTACTAAACGAGATCTATCACGCAT
GCGTCAGGTGGACCGCAAGGAATCATTCAAGGTTGCTACACAATACAATT
GTACACCTTTTGACGTTTCGTCGGCAAGTAATCGACGTGTGACGGAAAGT
TTTCATGCAATGTTCCGACAAATTGAAATTCGAAATTTATTGAATCAAAA
TGAAGGTATTGACGCACCTACCATCGTTAATCCACCTATTGTTGCAAGGT
CAGGTAAACTCCGGTATGGAACTGCATAGGAAAATTCAATCACAAAATAA
GAGTCGAATGAATTTTAACATAACACGGATTTTTAAATGAAGCCGCTGGA
TTAGAGACAAGATAAGAGAGAATAACAAATTTATTGAATTATTAATATTA
TATTGTAACTCTCTCCTCAAAATCGGCTGTCACAATAATAATTCgatatc
atttttattttaaacttgTCGATATGTATATATAAGATTTGTAATttcat
ttcgaaaaataaagcTGTGCTTTCTAATGAAACGAACCAAAAGAAGTGAC
ATAGAAGTGATAAAAACCCATACTCTAAAACCCCATTGGGGCTTAGAGAA
TG Run BLAST on NCBI transcript from alignment at sc0000400:67916..75844+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021917 ID=TCONS_00021917|Name=TCONS_00021917|organism=Clytia hemisphaerica|type=transcript|length=7929bp|location=Sequence derived from alignment at sc0000400:67916..75844+ (Clytia hemisphaerica)
cgaattttgaatttgataacTATTTTCATAATATTGTCTATCATTGCTGT
GAGTTTTTCAtcatctgtctgtctgtgtctCAAATTTTCTTGAACGAATG
GATCTTTTCAAAGGTATGACAGATCGATAAAAATAGGCTGGAATTTGAAC
TTTGTTGcaattgttttaaagtttgaaaCTTTAGAATAATAAATCTATTA
TTTGGAAGGAGTGAGAATATTGCTTTTTGGTTTCACCAACTCTAACTTCA
ACAAAAAGATATCCTAGACATAGACAGGATCATTATTTTGctaaaacact
tttaaaagCAAGAACATTTATTTCTGTATGAAGAGTTTGACGCAATGGCG
TatttaagcccgaagggctaatagcgaatctccttggtagaaTTTGAaac
caacaaatcctaccaaagctgCGTGGCTTAGAGCGGCCCGCCTGATTTTA
ACACATATGGcagattgaaacaaaaatttaccactgaatttcgaaaaaaa
tatcactcggAAACAAAGGAATTGAAAGATTCAATCCGTCGACAATAACA
CGTGGCATATCTTAGGGCTTccctttttcttgcctgagaaaggttagaga
tttgcttctagccctttgggcttatacttcattgcttTGACGGGCGGCAA
TGCTTGTTAAAGTTTACCATACATATATTTTGAAGACCTTATTGGACAGT
TTGCTAATTAcgtttatattttcttttaattttaggCAAGGGGAGGGAAT
GACAGGCCCATATTTCCAACACAACATATACAATATGAGCAGCGAACCAC
ATTTCCGGTCTGAAAGTCCAATTCCTCGTAGTCCACGATTCGGTAGTTTA
CGACGACGAAAACGCATCGACCGAGAATATTTTGATGATACGAGTGAAGG
CTCGGATGGGAGGACGAGTTCCGACGAATATGAATCTTCATCAAATCAAA
CATCGAAAAAAATGGACGATAATAACAACACAAATCAAAAGAATCGAAAA
AACAGTCATTTTGCTTTTAGTAATGTTaagaaaaagattacgtcaaCTTT
TCAGCGTCGGCATTCTGTGTCAATGCACCCTCCCTCAGCGACAGTTCAAG
GTAAACAATTACCGATTCGACGATCGTCAACGACCGGAAATCAATCACCA
AGACTTTTACGTCAATCTTCGTTTGATGAGAGCCATACCGCCGTACATAA
ACGTAAAACGTCGCTACGACGACAAGTTACCATGGCAGCTGTACGTTTAC
ACGAACAAAGTCAAGTCAGCGGTAGTAACCCAATGTTAGAcagaatttta
caaaaaagcCAATTTCAACTTGAATCAAGTTCCTCTACACCGGATATTAA
ATCACATTTATCTTTGAAAAAGAcacatttaaaaacatttaaaattcaTA
TACTTGGAAGCAAGTCCGTCGGAAAAACAGGTTGGTATCGCCTTCTTATG
TTCTTTGGAAGTAACACTCgctaatttatcaatttttctgattttacgGT
TCCACACGAAGCTTAGAAATGATGTAGCAGCACATTCCTCATTTTATTGG
ATTTGCTTGATTAATTTTTGCCAATcgcataaaataaattttagtcattt
ttaatcaattatagaaatatttcatgtttttcagCTCTGACGGTGCGTTT
TCTAACGGGAAGATACATTCACGAATATAAATCAGCAGCAGGTAAGCAAC
GACGTCATTAAGACGTTATTGAGTGTTTAGCAAAGGACCTAAGTAAAATA
CTTGATAAGACTCTCATGGATCGGTCCACTCCAAATCTAATATTTGAGTC
ATAAAAAGGATCACGCCATTACACCAAAAAATAGGCCCACTCACACTATC
GCGCAAGCGACTGAGGAGGCGTGGTAATAAAAGGCTAAGATTAAGATCAT
AGTCATGATGTCTCTCTTTAACTTTAATCCCTGCTAGCTAGAGGACTATG
AGCTGGTAAGATTCGATAAACTGAGGTTAAAGGTGAACTTTGCAATAATC
TATATTTTTCCGACGTTTTATTTTGTAGAAGAAACATACACACGTGTGAT
GAAatatgaagatgaagaagtcaATGTTAAAATACTCATCAATGATATTG
AATCTATGGTGAGTTAAATatggtttttatgaaattttttgaacaGCAGG
ATGTAAACAATACCTCTTGTCTTATAAATCCTTTGGTACAAATGCATTTT
CAACAAATGCTAGGATTCGTatcttattttttgacaaaaattagcACTTT
GGTTGACGCTACAATGCATTCTAAAACGGATCGAAAtcaacttttgtttt
tattttcatatgaCTTTTTCTTGTTCAAGCTTTTTCTGAACACTTTTAAC
AATACCtttttctcacagacccggtggggtTTTACCAgctagtggggata
aaattaacggaccaaaactcgatgagATTGacattcccatgttttttatg
gctggggatttgaattcctttgttttccAGCCAGAAAAGGGGATGACATT
CTAGGtaatttttccagtgagaagggttcccagtgggtctgtgagaagag
ggtgtttgACAATGTCATGTAAATTTACAAATGTAATAAAATTGGGTAAA
TTGTATGATTCAGATACAGATGGGTAGaagatttaaaacaaaaatacgaa
aaaaaatACTCTAAAACTCTTGGACAAATATTTCATCCTGTTCTGGAGGA
GTCACAGAAAGTGAGCCACAAGTCAAAAATACACATGAATTGAAATGATA
AAGGATGATATCAATATTTTAGTGGCAATGCTCTTTGTTATACGTTTTAG
AGAATTAAATTGATGCTAAgtagattaaaaataatttgaagataATTTCT
TGCATGTAATAATGCTGCGGGAGTCAATCGGAAATAATAAAGTATGTCTT
CCAAATCAGATAGACAATGGATTTAATGTTTCCTAATCAGCGGAAGTGAG
AATTACAAAGAAATCGTCAGCCAACAccaaaccaaaccaaacgcCCACGA
TTCATTCTGctcttcaaaaaaccttttcgTGTGTCTCTACAATAAGAGTC
TGGTAATTGCTACCAAATTCAGTTGTTTTGTAGACTTTAGAGACAAGTGC
GTAACGTTTGTGAGGTTCATGTAACGATAAAAAATACAACACAATATTTC
AAGATTATGCGATACTTTCCGGCACCCGAGACCAGGGCTAAAACTCatca
aataaaatataaataaaaatatcctTGATGTTCACCCTGGGAACGAAGGT
GGCTACACAGTACAGCGTATTTGATTAGCATCTATGGCAAATCTTTACCG
CGATGTATTTTCGATAAAATAGAGTGCATTTTAGTTTGTGAACTGCGCAG
CAGGACGGCTCTGTGGAAAATATATGTAAACAAAGTGTAAGGAGGTTTAA
GCATTGAACATATAACTTTGTACTTCAAGAAGAGGCAAAAAACGAGCCTT
GAAAGTAAGAAATTAGAAACCTGTCGGTAAATTATTAAAACCTCGTATTT
TATGTTAAGTGTATGGTTAGTAAAATCAACAAATAACTTTCAGGTACGGA
AATACCAAAgtaacctcaaatcaaaacaaaacattaggTAATTTTACTCA
CGACCATCACAAAAGTCCTTTAGGGGAttacaatgtttttattttttggt
gtATTTTGTATTCTCTCGTGTTTTCATTGCAACATCTCTACATTCCAGGA
GTATCAAATTAAATCTTGGCGTCAAGACTTATCTTTAGGAGCCATAGAGC
CTCTCACATCAGTACTGTTACTGCATAGTCTAGCATACTAGAGACGAAGG
GAAAAATTGTAGTCTATTCAAACTGATATTATTCCGTTAcgattatcgta
ttatcatctaacacccatattactgtattacataGATTGTGAATGACTCC
AGTCTATTACTTCAAAGAAAACAATCTACATGGGGTTGCAACCGTTTCTT
AAACCTCGAATCAAGTCTCAAaacacccctatctcacagcccctgtgtaa
ctttttttctcagtggggataaaaattcttattgaaatcataacggggat
agaaattcctttgttctaaggttaaaaaattcagtggcaaTGGATTTGAA
GCGcagtttttaaatattgaatttcgaatgtggatgaaataaaagttaat
ttccaAGTGGAACTGAAACTCTAAGGTATTTTCCAACCgggaaaaacttt
ttgtcaatctttccagtggggctgggctcccagcgggtctgtgacagaGG
GATACCTCAAAGGAatttaaaaagatttcaaagttaaAAATACATCATTT
TCGAGTTTCAAAAATGAGTAATTCTGGGAATCTTAGTCATCATCATTTAA
TTGACtttaaaatatcactttttgCGGTTATTTTCAATATCCTGTTATTA
TTTCTCATAAATTACATAGAGAGGTACAATCTCATTTgaagtgtttttca
aaataaaagccaTACCTAACGACCATAACACTGACTCAATTTGTATTACG
TAGTGCTTAGTCTTTTATTgggcttattatatgcttaattTAGAAAGTAA
AGTTTGATTTACTCAAATCTCTCTGAGCATCTGATAATAATTCAAGAAGA
TCAACAATAAAAAGACTTCACCAAGGTTTTGGTGTTGGTAAACTAAATTG
TTTCAAACTTCTCATTTATTGctttatggacgttgtgaatgttagGCGGA
CGTTCAAACAACATATCATCTGTCAGCTATGTGACCAGTATTGATGACAA
ATTAAAAGCATGAGTTTTGAAAAGCCGGTCACATAGATTCTAGATATGAA
TTCTTTTACCACGTTCGAGCGTGGGTTGAACTTCCTGATGTGATCTACAA
TTTCTTAATTCAATATgtcatttataaaaatattcataaatTGTAATAGA
TTTGCGGCAGGCAAAATCCTATCGGGAAATGTTCTTTGATAGATTtcctt
aaaatataaatatttgatACTTTAATCTTGGAATGACGAAATTCGGTTGA
TGTTTACTTTAAGTAAATACGCCTACTCCTTATCTCATTCGTTATATCCG
AACATATTGCCCTATCGAATTATCAAACTTCCAAATTACATTATTTTTGA
CATGTTTTCAATAAACTTCACTCTGCCCTAAAACGGCTTAAAGtatgtcc
agatataattggcagtggagacaagaatgcctgtaacttttgatagtcaa
atataattatgaaaatttttttttgcttgttttagagaatcaaaagcgct
atattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aataccccttggtagcacttttctgtgaaatatcaaatctccaatttatt
actaaaaacgggggttatgttatcttttttgaacagtgcaagtaaaagtt
ggaaagtgtcggtttattggtattattggtatcattgattatttcgaaac
gaagtgaaatcacagtataattgcttttattgaaaagataagcatgaact
tatattgcctttgttatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgctaccaaggggtatttc
gggtcccatatcttccgaaggacttttctgtttgccttgaaatttaaaaa
acttcttaacctaaggtcgAACTatcactggtgtaaaaatgaatgttata
gcataagtggaaaaaagctcaatttttgcaatcgtaaatttaaccgctaa
aagttgcgaatttttcaaccaaaaatacattcaaatatagcgcttttgat
tctctaaaacaaccaaaaaaaaattccataattatatttgactatcaaaa
gttacaggcattcttgtttccactgccaattatatctggacagactttag
ttataTTCTTCAGTTTCCATTCTTGTTTTTTACCCAACGCCCTTCATTTT
ATATCGGATAGTTATTTACACATTGAGCTCCAGGATCTGAGACAGGGTTG
TTCATCTCACAGTTTTGAACATAAAGCCTGGACAAATGTagagttatcgt
ccgttacagtgatagtaaaggcggcaAAGTATGGCGGTagggcgttatgg
cggtatacagAAAAAATCGgtgggagagtttcgaagaaacgactGGCAAA
CTCTAATGGCTATAAACTCTTTTCagcccgtttgcgaattttcttcggct
ttgttcttattttttagataGTGACTTGTcatagactatagcatagtcta
ggaCAATTGGTATTGGTATAAGTTATAGTCTCAGAACAAGTTGAAAATGC
TATTATATCCAAtgtaaaatctaaaatatttcattaaCTTCCTTTCTTCG
TTTTTAGGAAAATGACATTGAACTTGGTCAAAATTCTGGCATCATGATTT
TATACTCCATCGTTGACCGCACCTCATATGATTATgcgaaatttgtttta
aattatTTATCAGAGAACAATATAACTGGTTACTACCCTGTCATGCTAAT
GGGTACTAAACGAGATCTATCACGCATGCGTCAGGTGGACCGCAAGGAAT
CATTCAAGGTTGCTACACAATACAATTGTACACCTTTTGACGTTTCGTCG
GCAAGTAATCGACGTGTGACGGAAAGTTTTCATGCAATGTTCCGACAAAT
TGAAATTCGAAATTTATTGAATCAAAATGAAGGTATTGACGCACCTACCA
TCGTTAATCCACCTATTGTTGCAAGGTCAGGTAAACTCCGGTATGGAACT
GCATAGGAAAATTCAATCACAAAATAAGAGTCGAATGAATTTTAACATAA
CACGGATTTTTAAATGAAGCCGCTGGATTAGAGACAAGATAAGAGAGAAT
AACAAATTTATTGAATTATTAATATTATATTGTAACTCTCTCCTCAAAAT
CGGCTGTCACAATAATAATTCgatatcatttttattttaaacttgTCGAT
ATGTATATATAAGATTTGTAATttcatttcgaaaaataaagcTGTGCTTT
CTAATGAAACGAACCAAAAGAAGTGACATAGAAGTGATAAAAACCCATAC
TCTAAAACCCCATTGGGGCTTAGAGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021917-exon-sc0000400-1491911889:67916..67963 | TCONS_00021917-exon-sc0000400-1491911889:67916..67963 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1510915933:67916..67963 | TCONS_00021917-exon-sc0000400-1510915933:67916..67963 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1575043694:67916..67963 | TCONS_00021917-exon-sc0000400-1575043694:67916..67963 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1491911889:68651..69345 | TCONS_00021917-exon-sc0000400-1491911889:68651..69345 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1510915933:68651..69345 | TCONS_00021917-exon-sc0000400-1510915933:68651..69345 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1575043694:68651..69345 | TCONS_00021917-exon-sc0000400-1575043694:68651..69345 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1491911889:69550..69606 | TCONS_00021917-exon-sc0000400-1491911889:69550..69606 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1510915933:69550..69606 | TCONS_00021917-exon-sc0000400-1510915933:69550..69606 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1575043694:69550..69606 | TCONS_00021917-exon-sc0000400-1575043694:69550..69606 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1491911889:69944..70023 | TCONS_00021917-exon-sc0000400-1491911889:69944..70023 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1510915933:69944..70023 | TCONS_00021917-exon-sc0000400-1510915933:69944..70023 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1575043694:69944..70023 | TCONS_00021917-exon-sc0000400-1575043694:69944..70023 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1491911889:75123..75844 | TCONS_00021917-exon-sc0000400-1491911889:75123..75844 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1510915933:75123..75844 | TCONS_00021917-exon-sc0000400-1510915933:75123..75844 | Clytia hemisphaerica | exon |
| TCONS_00021917-exon-sc0000400-1575043694:75123..75844 | TCONS_00021917-exon-sc0000400-1575043694:75123..75844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:67916..75844 + |
Blast
BLAST of TCONS_00021917 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.545e-20 Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = 2
Query: 704 KIHILGSKSVGKTALTVRFLTGRYIHEYKSAAEETYTRVMKYEDEEVNVKILINDIESMENDIE----LGQNSGIMILYSIVDRTSYDYAKFVLNYLSENNITGYYPVMLMGTKRDLSRMRQVDRKESFKVATQYNCTPFDVSSASNR-RVTESFHAMFRQIEIRNLL 1192
K+ I G VGK+AL VRFLT R+I EY E TY +DE V+++IL D E+ I+ + G +++Y I DR S++ + N L E ++L+G K DL RQV +E K+AT+ C ++ S+ + +TE F+ + R++ R ++
Sbjct: 8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEIL--DTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMV 173
The following BLAST results are available for this feature:
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