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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021918 ID=TCONS_00021918|Name=TCONS_00021918|organism=Clytia hemisphaerica|type=transcript|length=1619bp
GTGAGTTTTTCAtcatctgtctgtctgtgtctCAAATTTTCTTGAACGAA
TGGATCTTTTCAAAGgCAAGGGGAGGGAATGACAGGCCCATATTTCCAAC
ACAACATATACAATATGAGCAGCGAACCACATTTCCGGTCTGAAAGTCCA
ATTCCTCGTAGTCCACGATTCGGTAGTTTACGACGACGAAAACGCATCGA
CCGAGAATATTTTGATGATACGAGTGAAGGCTCGGATGGGAGGACGAGTT
CCGACGAATATGAATCTTCATCAAATCAAACATCGAAAAAAATGGACGAT
AATAACAACACAAATCAAAAGAATCGAAAAAACAGTCATTTTGCTTTTAG
TAATGTTaagaaaaagattacgtcaaCTTTTCAGCGTCGGCATTCTGTGT
CAATGCACCCTCCCTCAGCGACAGTTCAAGGTAAACAATTACCGATTCGA
CGATCGTCAACGACCGGAAATCAATCACCAAGACTTTTACGTCAATCTTC
GTTTGATGAGAGCCATACCGCCGTACATAAACGTAAAACGTCGCTACGAC
GACAAGTTACCATGGCAGCTGTACGTTTACACGAACAAAGTCAAGTCAGC
GGTAGTAACCCAATGTTAGAcagaattttacaaaaaagcCAATTTCAACT
TGAATCAAGTTCCTCTACACCGGATATTAAATCACATTTATCTTTGAAAA
AGAcacatttaaaaacatttaaaattcaTATACTTGGAAGCAAGTCCGTC
GGAAAAACAGCTCTGACGGTGCGTTTTCTAACGGGAAGATACATTCACGA
ATATAAATCAGCAGCAGAAGAAACATACACACGTGTGATGAAatatgaag
atgaagaagtcaATGTTAAAATACTCATCAATGATATTGAATCTATGGAA
AATGACATTGAACTTGGTCAAAATTCTGGCATCATGATTTTATACTCCAT
CGTTGACCGCACCTCATATGATTATgcgaaatttgttttaaattatTTAT
CAGAGAACAATATAACTGGTTACTACCCTGTCATGCTAATGGGTACTAAA
CGAGATCTATCACGCATGCGTCAGGTGGACCGCAAGGAATCATTCAAGGT
TGCTACACAATACAATTGTACACCTTTTGACGTTTCGTCGGCAAGTAATC
GACGTGTGACGGAAAGTTTTCATGCAATGTTCCGACAAATTGAAATTCGA
AATTTATTGAATCAAAATGAAGGTATTGACGCACCTACCATCGTTAATCC
ACCTATTGTTGCAAGGTCAGGTAAACTCCGGTATGGAACTGCATAGGAAA
ATTCAATCACAAAATAAGAGTCGAATGAATTTTAACATAACACGGATTTT
TAAATGAAGCCGCTGGATTAGAGACAAGATAAGAGAGAATAACAAATTTA
TTGAATTATTAATATTATATTGTAACTCTCTCCTCAAAATCGGCTGTCAC
AATAATAATTCgatatcatttttattttaaacttgTCGATATGTATATAT
AAGATTTGTAATttcatttcgaaaaataaagcTGTGCTTTCTAATGAAAC
GAACCAAAAGAAGTGACATAGAAGTGATAAAAACCCATACTCTAAAACCC
CATTGGGGCTTAGAGAATG Run BLAST on NCBI transcript from alignment at sc0000400:67964..75844+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021918 ID=TCONS_00021918|Name=TCONS_00021918|organism=Clytia hemisphaerica|type=transcript|length=7881bp|location=Sequence derived from alignment at sc0000400:67964..75844+ (Clytia hemisphaerica)
GTGAGTTTTTCAtcatctgtctgtctgtgtctCAAATTTTCTTGAACGAA
TGGATCTTTTCAAAGGTATGACAGATCGATAAAAATAGGCTGGAATTTGA
ACTTTGTTGcaattgttttaaagtttgaaaCTTTAGAATAATAAATCTAT
TATTTGGAAGGAGTGAGAATATTGCTTTTTGGTTTCACCAACTCTAACTT
CAACAAAAAGATATCCTAGACATAGACAGGATCATTATTTTGctaaaaca
cttttaaaagCAAGAACATTTATTTCTGTATGAAGAGTTTGACGCAATGG
CGTatttaagcccgaagggctaatagcgaatctccttggtagaaTTTGAa
accaacaaatcctaccaaagctgCGTGGCTTAGAGCGGCCCGCCTGATTT
TAACACATATGGcagattgaaacaaaaatttaccactgaatttcgaaaaa
aatatcactcggAAACAAAGGAATTGAAAGATTCAATCCGTCGACAATAA
CACGTGGCATATCTTAGGGCTTccctttttcttgcctgagaaaggttaga
gatttgcttctagccctttgggcttatacttcattgcttTGACGGGCGGC
AATGCTTGTTAAAGTTTACCATACATATATTTTGAAGACCTTATTGGACA
GTTTGCTAATTAcgtttatattttcttttaattttaggCAAGGGGAGGGA
ATGACAGGCCCATATTTCCAACACAACATATACAATATGAGCAGCGAACC
ACATTTCCGGTCTGAAAGTCCAATTCCTCGTAGTCCACGATTCGGTAGTT
TACGACGACGAAAACGCATCGACCGAGAATATTTTGATGATACGAGTGAA
GGCTCGGATGGGAGGACGAGTTCCGACGAATATGAATCTTCATCAAATCA
AACATCGAAAAAAATGGACGATAATAACAACACAAATCAAAAGAATCGAA
AAAACAGTCATTTTGCTTTTAGTAATGTTaagaaaaagattacgtcaaCT
TTTCAGCGTCGGCATTCTGTGTCAATGCACCCTCCCTCAGCGACAGTTCA
AGGTAAACAATTACCGATTCGACGATCGTCAACGACCGGAAATCAATCAC
CAAGACTTTTACGTCAATCTTCGTTTGATGAGAGCCATACCGCCGTACAT
AAACGTAAAACGTCGCTACGACGACAAGTTACCATGGCAGCTGTACGTTT
ACACGAACAAAGTCAAGTCAGCGGTAGTAACCCAATGTTAGAcagaattt
tacaaaaaagcCAATTTCAACTTGAATCAAGTTCCTCTACACCGGATATT
AAATCACATTTATCTTTGAAAAAGAcacatttaaaaacatttaaaattca
TATACTTGGAAGCAAGTCCGTCGGAAAAACAGGTTGGTATCGCCTTCTTA
TGTTCTTTGGAAGTAACACTCgctaatttatcaatttttctgattttacg
GTTCCACACGAAGCTTAGAAATGATGTAGCAGCACATTCCTCATTTTATT
GGATTTGCTTGATTAATTTTTGCCAATcgcataaaataaattttagtcat
ttttaatcaattatagaaatatttcatgtttttcagCTCTGACGGTGCGT
TTTCTAACGGGAAGATACATTCACGAATATAAATCAGCAGCAGGTAAGCA
ACGACGTCATTAAGACGTTATTGAGTGTTTAGCAAAGGACCTAAGTAAAA
TACTTGATAAGACTCTCATGGATCGGTCCACTCCAAATCTAATATTTGAG
TCATAAAAAGGATCACGCCATTACACCAAAAAATAGGCCCACTCACACTA
TCGCGCAAGCGACTGAGGAGGCGTGGTAATAAAAGGCTAAGATTAAGATC
ATAGTCATGATGTCTCTCTTTAACTTTAATCCCTGCTAGCTAGAGGACTA
TGAGCTGGTAAGATTCGATAAACTGAGGTTAAAGGTGAACTTTGCAATAA
TCTATATTTTTCCGACGTTTTATTTTGTAGAAGAAACATACACACGTGTG
ATGAAatatgaagatgaagaagtcaATGTTAAAATACTCATCAATGATAT
TGAATCTATGGTGAGTTAAATatggtttttatgaaattttttgaacaGCA
GGATGTAAACAATACCTCTTGTCTTATAAATCCTTTGGTACAAATGCATT
TTCAACAAATGCTAGGATTCGTatcttattttttgacaaaaattagcACT
TTGGTTGACGCTACAATGCATTCTAAAACGGATCGAAAtcaacttttgtt
tttattttcatatgaCTTTTTCTTGTTCAAGCTTTTTCTGAACACTTTTA
ACAATACCtttttctcacagacccggtggggtTTTACCAgctagtgggga
taaaattaacggaccaaaactcgatgagATTGacattcccatgtttttta
tggctggggatttgaattcctttgttttccAGCCAGAAAAGGGGATGACA
TTCTAGGtaatttttccagtgagaagggttcccagtgggtctgtgagaag
agggtgtttgACAATGTCATGTAAATTTACAAATGTAATAAAATTGGGTA
AATTGTATGATTCAGATACAGATGGGTAGaagatttaaaacaaaaatacg
aaaaaaaatACTCTAAAACTCTTGGACAAATATTTCATCCTGTTCTGGAG
GAGTCACAGAAAGTGAGCCACAAGTCAAAAATACACATGAATTGAAATGA
TAAAGGATGATATCAATATTTTAGTGGCAATGCTCTTTGTTATACGTTTT
AGAGAATTAAATTGATGCTAAgtagattaaaaataatttgaagataATTT
CTTGCATGTAATAATGCTGCGGGAGTCAATCGGAAATAATAAAGTATGTC
TTCCAAATCAGATAGACAATGGATTTAATGTTTCCTAATCAGCGGAAGTG
AGAATTACAAAGAAATCGTCAGCCAACAccaaaccaaaccaaacgcCCAC
GATTCATTCTGctcttcaaaaaaccttttcgTGTGTCTCTACAATAAGAG
TCTGGTAATTGCTACCAAATTCAGTTGTTTTGTAGACTTTAGAGACAAGT
GCGTAACGTTTGTGAGGTTCATGTAACGATAAAAAATACAACACAATATT
TCAAGATTATGCGATACTTTCCGGCACCCGAGACCAGGGCTAAAACTCat
caaataaaatataaataaaaatatcctTGATGTTCACCCTGGGAACGAAG
GTGGCTACACAGTACAGCGTATTTGATTAGCATCTATGGCAAATCTTTAC
CGCGATGTATTTTCGATAAAATAGAGTGCATTTTAGTTTGTGAACTGCGC
AGCAGGACGGCTCTGTGGAAAATATATGTAAACAAAGTGTAAGGAGGTTT
AAGCATTGAACATATAACTTTGTACTTCAAGAAGAGGCAAAAAACGAGCC
TTGAAAGTAAGAAATTAGAAACCTGTCGGTAAATTATTAAAACCTCGTAT
TTTATGTTAAGTGTATGGTTAGTAAAATCAACAAATAACTTTCAGGTACG
GAAATACCAAAgtaacctcaaatcaaaacaaaacattaggTAATTTTACT
CACGACCATCACAAAAGTCCTTTAGGGGAttacaatgtttttattttttg
gtgtATTTTGTATTCTCTCGTGTTTTCATTGCAACATCTCTACATTCCAG
GAGTATCAAATTAAATCTTGGCGTCAAGACTTATCTTTAGGAGCCATAGA
GCCTCTCACATCAGTACTGTTACTGCATAGTCTAGCATACTAGAGACGAA
GGGAAAAATTGTAGTCTATTCAAACTGATATTATTCCGTTAcgattatcg
tattatcatctaacacccatattactgtattacataGATTGTGAATGACT
CCAGTCTATTACTTCAAAGAAAACAATCTACATGGGGTTGCAACCGTTTC
TTAAACCTCGAATCAAGTCTCAAaacacccctatctcacagcccctgtgt
aactttttttctcagtggggataaaaattcttattgaaatcataacgggg
atagaaattcctttgttctaaggttaaaaaattcagtggcaaTGGATTTG
AAGCGcagtttttaaatattgaatttcgaatgtggatgaaataaaagtta
atttccaAGTGGAACTGAAACTCTAAGGTATTTTCCAACCgggaaaaact
ttttgtcaatctttccagtggggctgggctcccagcgggtctgtgacaga
GGGATACCTCAAAGGAatttaaaaagatttcaaagttaaAAATACATCAT
TTTCGAGTTTCAAAAATGAGTAATTCTGGGAATCTTAGTCATCATCATTT
AATTGACtttaaaatatcactttttgCGGTTATTTTCAATATCCTGTTAT
TATTTCTCATAAATTACATAGAGAGGTACAATCTCATTTgaagtgttttt
caaaataaaagccaTACCTAACGACCATAACACTGACTCAATTTGTATTA
CGTAGTGCTTAGTCTTTTATTgggcttattatatgcttaattTAGAAAGT
AAAGTTTGATTTACTCAAATCTCTCTGAGCATCTGATAATAATTCAAGAA
GATCAACAATAAAAAGACTTCACCAAGGTTTTGGTGTTGGTAAACTAAAT
TGTTTCAAACTTCTCATTTATTGctttatggacgttgtgaatgttagGCG
GACGTTCAAACAACATATCATCTGTCAGCTATGTGACCAGTATTGATGAC
AAATTAAAAGCATGAGTTTTGAAAAGCCGGTCACATAGATTCTAGATATG
AATTCTTTTACCACGTTCGAGCGTGGGTTGAACTTCCTGATGTGATCTAC
AATTTCTTAATTCAATATgtcatttataaaaatattcataaatTGTAATA
GATTTGCGGCAGGCAAAATCCTATCGGGAAATGTTCTTTGATAGATTtcc
ttaaaatataaatatttgatACTTTAATCTTGGAATGACGAAATTCGGTT
GATGTTTACTTTAAGTAAATACGCCTACTCCTTATCTCATTCGTTATATC
CGAACATATTGCCCTATCGAATTATCAAACTTCCAAATTACATTATTTTT
GACATGTTTTCAATAAACTTCACTCTGCCCTAAAACGGCTTAAAGtatgt
ccagatataattggcagtggagacaagaatgcctgtaacttttgatagtc
aaatataattatgaaaatttttttttgcttgttttagagaatcaaaagcg
ctatattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNaataccccttggtagcacttttctgtgaaatatcaaatctccaattta
ttactaaaaacgggggttatgttatcttttttgaacagtgcaagtaaaag
ttggaaagtgtcggtttattggtattattggtatcattgattatttcgaa
acgaagtgaaatcacagtataattgcttttattgaaaagataagcatgaa
cttatattgcctttgttatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgctaccaaggggtatt
tcgggtcccatatcttccgaaggacttttctgtttgccttgaaatttaaa
aaacttcttaacctaaggtcgAACTatcactggtgtaaaaatgaatgtta
tagcataagtggaaaaaagctcaatttttgcaatcgtaaatttaaccgct
aaaagttgcgaatttttcaaccaaaaatacattcaaatatagcgcttttg
attctctaaaacaaccaaaaaaaaattccataattatatttgactatcaa
aagttacaggcattcttgtttccactgccaattatatctggacagacttt
agttataTTCTTCAGTTTCCATTCTTGTTTTTTACCCAACGCCCTTCATT
TTATATCGGATAGTTATTTACACATTGAGCTCCAGGATCTGAGACAGGGT
TGTTCATCTCACAGTTTTGAACATAAAGCCTGGACAAATGTagagttatc
gtccgttacagtgatagtaaaggcggcaAAGTATGGCGGTagggcgttat
ggcggtatacagAAAAAATCGgtgggagagtttcgaagaaacgactGGCA
AACTCTAATGGCTATAAACTCTTTTCagcccgtttgcgaattttcttcgg
ctttgttcttattttttagataGTGACTTGTcatagactatagcatagtc
taggaCAATTGGTATTGGTATAAGTTATAGTCTCAGAACAAGTTGAAAAT
GCTATTATATCCAAtgtaaaatctaaaatatttcattaaCTTCCTTTCTT
CGTTTTTAGGAAAATGACATTGAACTTGGTCAAAATTCTGGCATCATGAT
TTTATACTCCATCGTTGACCGCACCTCATATGATTATgcgaaatttgttt
taaattatTTATCAGAGAACAATATAACTGGTTACTACCCTGTCATGCTA
ATGGGTACTAAACGAGATCTATCACGCATGCGTCAGGTGGACCGCAAGGA
ATCATTCAAGGTTGCTACACAATACAATTGTACACCTTTTGACGTTTCGT
CGGCAAGTAATCGACGTGTGACGGAAAGTTTTCATGCAATGTTCCGACAA
ATTGAAATTCGAAATTTATTGAATCAAAATGAAGGTATTGACGCACCTAC
CATCGTTAATCCACCTATTGTTGCAAGGTCAGGTAAACTCCGGTATGGAA
CTGCATAGGAAAATTCAATCACAAAATAAGAGTCGAATGAATTTTAACAT
AACACGGATTTTTAAATGAAGCCGCTGGATTAGAGACAAGATAAGAGAGA
ATAACAAATTTATTGAATTATTAATATTATATTGTAACTCTCTCCTCAAA
ATCGGCTGTCACAATAATAATTCgatatcatttttattttaaacttgTCG
ATATGTATATATAAGATTTGTAATttcatttcgaaaaataaagcTGTGCT
TTCTAATGAAACGAACCAAAAGAAGTGACATAGAAGTGATAAAAACCCAT
ACTCTAAAACCCCATTGGGGCTTAGAGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021918-exon-sc0000400-1491911889:67964..68028 | TCONS_00021918-exon-sc0000400-1491911889:67964..68028 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1510915933:67964..68028 | TCONS_00021918-exon-sc0000400-1510915933:67964..68028 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1575043694:67964..68028 | TCONS_00021918-exon-sc0000400-1575043694:67964..68028 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1491911889:68651..69345 | TCONS_00021918-exon-sc0000400-1491911889:68651..69345 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1510915933:68651..69345 | TCONS_00021918-exon-sc0000400-1510915933:68651..69345 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1575043694:68651..69345 | TCONS_00021918-exon-sc0000400-1575043694:68651..69345 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1491911889:69550..69606 | TCONS_00021918-exon-sc0000400-1491911889:69550..69606 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1510915933:69550..69606 | TCONS_00021918-exon-sc0000400-1510915933:69550..69606 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1575043694:69550..69606 | TCONS_00021918-exon-sc0000400-1575043694:69550..69606 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1491911889:69944..70023 | TCONS_00021918-exon-sc0000400-1491911889:69944..70023 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1510915933:69944..70023 | TCONS_00021918-exon-sc0000400-1510915933:69944..70023 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1575043694:69944..70023 | TCONS_00021918-exon-sc0000400-1575043694:69944..70023 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1491911889:75123..75844 | TCONS_00021918-exon-sc0000400-1491911889:75123..75844 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1510915933:75123..75844 | TCONS_00021918-exon-sc0000400-1510915933:75123..75844 | Clytia hemisphaerica | exon |
| TCONS_00021918-exon-sc0000400-1575043694:75123..75844 | TCONS_00021918-exon-sc0000400-1575043694:75123..75844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:67964..75844 + |
Blast
BLAST of TCONS_00021918 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.600e-20 Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 721 KIHILGSKSVGKTALTVRFLTGRYIHEYKSAAEETYTRVMKYEDEEVNVKILINDIESMENDIE----LGQNSGIMILYSIVDRTSYDYAKFVLNYLSENNITGYYPVMLMGTKRDLSRMRQVDRKESFKVATQYNCTPFDVSSASNR-RVTESFHAMFRQIEIRNLL 1209
K+ I G VGK+AL VRFLT R+I EY E TY +DE V+++IL D E+ I+ + G +++Y I DR S++ + N L E ++L+G K DL RQV +E K+AT+ C ++ S+ + +TE F+ + R++ R ++
Sbjct: 8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEIL--DTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMV 173
The following BLAST results are available for this feature:
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