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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021921 ID=TCONS_00021921|Name=TCONS_00021921|organism=Clytia hemisphaerica|type=transcript|length=361bp
CTTTCCTTGCTTGATGCTGTTTTTTTCGACTGTGAGGAAGAAGTATCGGA
GCAGATTAACTCTATGGAGTCAGATCTTGCAGAAACATCACAAGTGGCAA
CATTTGATTGTGAAATATGCGGAAAGATTTGCAAGACAAAGGGTGGAATA
AAGAGACATAAAGCAGCAAAACATCCACATGAAGTGtatttggaaaaagt
taaagagaaggaggaaaaaacaaaaattgcaagTGACAAATTGGGATCGA
TGGATATTATGAGACTAATCAAagaggggggcgtacgggatatcggtaca
tcggtattggcctttttttagatcggtaaatcggtattagaGGAAAAAAT
TGATCGGTAAT Run BLAST on NCBI protein sequence of TCONS_00021921-protein >TCONS_00021921-protein ID=TCONS_00021921-protein|Name=TCONS_00021921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
LSLLDAVFFDCEEEVSEQINSMESDLAETSQVATFDCEICGKICKTKGGI
KRHKAAKHPHEVYLEKVKEKEEKTKIASDKLGSMDIMRLIKEGGVRDIGT
SVLAFF Run BLAST on NCBI transcript from alignment at sc0000400:261450..262797+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021921 ID=TCONS_00021921|Name=TCONS_00021921|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at sc0000400:261450..262797+ (Clytia hemisphaerica)
CTTTCCTTGCTTGATGCTGTTTTTTTCGACTGTGAGGAAGAAGTATCGGA
GCAGATTAACTCTATGGAGTCAGATGTAAGTACCAAATCTTTGTTCTTTT
TCACACGCacaccaacgatgtaaaaataatagataaccaactacctctag
aaggcacttctcccaagagaacaaccattgttttcctattgaaatgagca
ctctattaaaaagctcagtttgcagtgcgtgttatgcttttagctagatt
ttgacacacttttagacatccactgaattgatagaaaatttgaattgtta
tttactgcaaattgtggaattatttccaaaagataaaggtaccaatcttt
agacaaattgactacggattggcctgataccacttaggGGCCctccactt
aatcttcatctggataaataaacgctcataaaatgctgttatctgaaaaa
tatatgtgtgatttgaaatgcgatatctcacgtatgaaaagtgcatgaag
gttgcaggatacaaaataaacagatgaatgtttatagaacaataatatct
aattaaaaaattccttctgtgaggctgcctataagaaaatacactttttc
taacgaaaattttggaaaaatatacatcacgtgatcgatgtccaatagaa
ggttgcaaatgaagcaagtttttatttaattgcactttttacaatgcaaa
atgtcattaatatttttacaaccgcgtaacacggatgtttcttgagaatc
aaggcaagttggttatctattatttttacatcgctGCGCACACCTTCTCT
TTATTATTCAAATAATATTTGCTTTACTTTTGACTGCTTTTTAAGTGTAA
GGGTGCAGTAGTTTCTTTACTTATGTTTGGTTAGGATGTAGGATACCCAA
ATCAAGAATAGAGCAACATAATCCAGACCTTTCAAAAACCTTTTCTTTCA
ATCACTTTAACAATCAAGTTTTCTTGATTCTTTCAGTTTCAATGATGGAA
AATACTTGGAAAATTAACTAATTGAAAGTTAATAATtcaacttttgtttt
ctttgtctACAGCTTGCAGAAACATCACAAGTGGCAACATTTGATTGTGA
AATATGCGGAAAGATTTGCAAGACAAAGGGTGGAATAAAGAGACATAAAG
CAGCAAAACATCCACATGAAGTGtatttggaaaaagttaaagagaaggag
gaaaaaacaaaaattgcaagTGACAAATTGGGATCGATGGATATTATGAG
ACTAATCAAagaggggggcgtacgggatatcggtacatcggtattggcct
ttttttagatcggtaaatcggtattagaGGAAAAAATTGATCGGTAAT Coding sequence (CDS) from alignment at sc0000400:261450..262797+ >TCONS_00021921 ID=TCONS_00021921|Name=TCONS_00021921|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000400:261450..262797+ (Clytia hemisphaerica)
CTTTCCTTGCTTGATGCTGTTTTTTTCGACTGTGAGGAAGAAGTATCGGA
GCAGATTAACTCTATGGAGTCAGATCTTGCAGAAACATCACAAGTGGCAA
CATTTGATTGTGAAATATGCGGAAAGATTTGCAAGACAAAGGGTGGAATA
AAGAGACATAAAGCAGCAAAACATCCACATGAAGTGtatttggaaaaagt
taaagagaaggaggaaaaaacaaaaattgcaagTGACAAATTGGGATCGA
TGGATATTATGAGACTAATCAAagaggggggcgtacgggatatcggtaca
tcggtattggcctttttttagCTTTCCTTGCTTGATGCTGTTTTTTTCGA
CTGTGAGGAAGAAGTATCGGAGCAGATTAACTCTATGGAGTCAGATCTTG
CAGAAACATCACAAGTGGCAACATTTGATTGTGAAATATGCGGAAAGATT
TGCAAGACAAAGGGTGGAATAAAGAGACATAAAGCAGCAAAACATCCACA
TGAAGTGtatttggaaaaagttaaagagaaggaggaaaaaacaaaaattg
caagTGACAAATTGGGATCGATGGATATTATGAGACTAATCAAagagggg
ggcgtacgggatatcggtacatcggtattggcctttttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021921-exon-sc0000400-1491911889:261450..261524 | TCONS_00021921-exon-sc0000400-1491911889:261450..261524 | Clytia hemisphaerica | exon |
| TCONS_00021921-exon-sc0000400-1510915933:261450..261524 | TCONS_00021921-exon-sc0000400-1510915933:261450..261524 | Clytia hemisphaerica | exon |
| TCONS_00021921-exon-sc0000400-1575043694:261450..261524 | TCONS_00021921-exon-sc0000400-1575043694:261450..261524 | Clytia hemisphaerica | exon |
| TCONS_00021921-exon-sc0000400-1491911889:262512..262797 | TCONS_00021921-exon-sc0000400-1491911889:262512..262797 | Clytia hemisphaerica | exon |
| TCONS_00021921-exon-sc0000400-1510915933:262512..262797 | TCONS_00021921-exon-sc0000400-1510915933:262512..262797 | Clytia hemisphaerica | exon |
| TCONS_00021921-exon-sc0000400-1575043694:262512..262797 | TCONS_00021921-exon-sc0000400-1575043694:262512..262797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:261450..262797 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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