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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021928 ID=TCONS_00021928|Name=TCONS_00021928|organism=Clytia hemisphaerica|type=transcript|length=3709bpRun BLAST on NCBI protein sequence of TCONS_00021928-protein >TCONS_00021928-protein ID=TCONS_00021928-protein|Name=TCONS_00021928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1126bp MALNSPKENNESAINSLNLAWDPKTIEIRTRSVEKALEPLIIQVTTLVNHRun BLAST on NCBI transcript from alignment at sc0000400:110211..161312- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021928 ID=TCONS_00021928|Name=TCONS_00021928|organism=Clytia hemisphaerica|type=transcript|length=51102bp|location=Sequence derived from alignment at sc0000400:110211..161312- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000400:110211..161312- >TCONS_00021928 ID=TCONS_00021928|Name=TCONS_00021928|organism=Clytia hemisphaerica|type=CDS|length=71001bp|location=Sequence derived from alignment at sc0000400:110211..161312- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021928 vs. Swiss-Prot (Human)
Match: CTNA2 (Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5) HSP 1 Score: 537.724 bits (1384), Expect = 1.166e-171 Identity = 294/625 (47.04%), Postives = 428/625 (68.48%), Query Frame = 1
Query: 163 SAINSLNLAWDPKTIEIRTRSVEKALEPLIIQVTTLVNHSKKNQKLKRGRSKKAVQ-LVKDIDQATARLVDVGQDIAEDYQEVKIPMLEACTEAEEAGKVMHDAATEFALDPCTPSKRGTMVKSARILLSSVTRLLCIADMADVHRXXXXXXXXXXXXXXXXXMDTADDLLSAFKHYGNDLMQFAKLTGLRQADLKDARRKDEMAAARATLKRTSKMLLTTSKAYVSHPDLQSTKQNRDYVVDQVSSAVATISGVAQAVGES-QRHPYEEVGYLARALDELMAQLEREPEDFHDKENQNDLHLLVDDIVTGASNLAESVCTREKTRQKIFNESRHVKVAIKGLIDE-CDNHAHRDKSD-VDGAKRKVGKKAKDLTKQLTRSVVDHVSDSFLETNVPILLLIKAAESGNGREVEDCSNLFMGHADKLQKVADLACSMSTNVEGIKMVKIAAHQLKLLCPQVVNAAHTLTDRPKSKHARENMSVFKEAWLQQVAILTEAVDDITTIDDFLTVSEAHILEDINHCIEAMQSNDPETLDRTAGAVRGRVKRVDHVVMSEMLNYEPGQYTDSVYRAVGTMKNRIMVEFAECVEMVVDALSKGNVGDVDEALFIDVAGLVHEGMRDIRKAV 2025
SA + + L WDPK++EIRT +VE+ LEPL+ QVTTLVN S K K+ K L ++QAT ++ G+ IA++ Q++K ++ A + + G+ M A++EFA DPC+ KRGTMV++AR LLS+VTRLL +ADMADV RLL+ LK VEE L+ ++ DL + FK +G ++++ + RQ +LKD +DEMAAAR LK+ + ML T S+A++ HPD+ +T+ NRDYV QV A+A IS AQA + + + +G LA AL+E ++ +P F + + L ++ I++GA+ +A+S CTR+ R++I E V+ A++ L+ E +N ++K D ++ A K+ KK +DL +QL ++V+DH+SDSFLETNVP+L+LI+AA+SGN +EV++ + +F HA+KL +VA+LACS+S N EG+K+V++AA Q+ LCPQV+NAA TL RP+SK A++NM VFK+ W +QV +LTEAVDDIT++DDFL+VSE HILED+N C+ A+Q D +TLDRTAGA+RGR RV H++ +EM NYE G YT+ V A + +M FAE VE+ ++ALS +E FID + LV++G+RDIRKAV
Sbjct: 3 SATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISNAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNTGRKEKGDPLNIAIDKMTKKTRDLRRQLRKAVMDHISDSFLETNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSISNNEEGVKLVRMAATQIDSLCPQVINAALTLAARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDDITSVDDFLSVSENHILEDVNKCVIALQEGDVDTLDRTAGAIRGRAARVIHIINAEMENYEAGVYTEKVLEATKLLSETVMPRFAEQVEVAIEALSANVPQPFEENEFIDASRLVYDGVRDIRKAV 627 HSP 2 Score: 90.1225 bits (222), Expect = 4.123e-18 Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 3208 HSASSIMRSLPDEEKAKISKLNEGFLLEKNRLISEVSRWDDSGNEIIVLAKRMCMIMMDMSDFTR 3402
SA +IM LP EEKAKI++ E F EK++L +EV++WDDSGN+IIVLAK+MCMIMM+M+DFTR
Sbjct: 666 QSARAIMAQLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTR 730 The following BLAST results are available for this feature:
BLAST of TCONS_00021928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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