|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021931 ID=TCONS_00021931|Name=TCONS_00021931|organism=Clytia hemisphaerica|type=transcript|length=2799bpRun BLAST on NCBI transcript from alignment at sc0000400:111363..129809- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021931 ID=TCONS_00021931|Name=TCONS_00021931|organism=Clytia hemisphaerica|type=transcript|length=18447bp|location=Sequence derived from alignment at sc0000400:111363..129809- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021931 vs. Swiss-Prot (Human)
Match: CTNA1 (Catenin alpha-1 OS=Homo sapiens GN=CTNNA1 PE=1 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 1.860e-101 Identity = 174/348 (50.00%), Postives = 249/348 (71.55%), Query Frame = 3
Query: 84 LDDIVAQLEREPEDFHDKENQNDLHLLVDDIVTGASNLAESVCTREKTRQKIFNESRHVKVAIKGLIDE-CDNHAHRDKSD-VDGAKRKVGKKAKDLTKQLTRSVVDHVSDSFLETNVPILLLIKAAESGNGREVEDCSNLFMGHADKLQKVADLACSMSTNVEGIKMVKIAAHQLKLLCPQVVNAAHTLTDRPKSKHARENMSVFKEAWLQQVAILTEAVDDITTIDDFLTVSEAHILEDINHCIEAMQSNDPETLDRTAGAVRGRVKRVDHVVMSEMLNYEPGQYTDSVYRAVGTMKNRIMVEFAECVEMVVDALSKGNVGDVDEALFIDVAGLVHEGMRDIRKAV 1121
L++ Q+ +P F ++ + L ++ I++GA+ +A+S CTR+ R++I E V+ A++ L+ E N +++SD ++ A K+ KK +DL +QL ++V+DHVSDSFLETNVP+L+LI+AA++GN +EV++ + +F HA+KL +VA+LACS+S N EG+K+V+++A QL+ LCPQV+NAA L +P+SK A+ENM +FKE W +QV +LT+AVDDIT+IDDFL VSE HILED+N C+ A+Q D + LDRTAGA+RGR RV HVV SEM NYEPG YT+ V A + N +M F E VE V+ALS +DE FID + LV++G+RDIRKAV
Sbjct: 282 LNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAV 629 HSP 2 Score: 89.3521 bits (220), Expect = 4.836e-18 Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 3
Query: 2304 HSASSIMRSLPDEEKAKISKLNEGFLLEKNRLISEVSRWDDSGNEIIVLAKRMCMIMMDMSDFTR 2498
SA +IM LP E+KAKI++ F EK++L +EVS+WDDSGN+IIVLAK+MCMIMM+M+DFTR
Sbjct: 667 QSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTR 731 The following BLAST results are available for this feature:
BLAST of TCONS_00021931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.