TCONS_00021955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021955
Unique NameTCONS_00021955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021955 ID=TCONS_00021955|Name=TCONS_00021955|organism=Clytia hemisphaerica|type=transcript|length=292bp
GTCATAATCAAAATTCGGGACGTTGCCTTCAATGACGTTCCAGGTATAAA
TTATTTGATACCGCTCTCTCCGTCTTTCAAGGCTATACAGttttaatgat
ttgagtttttccCAATAATTGAGATGTCTGAGGGATGGAATTCcatgtaa
aaataatttctgAACTTCTTCCAGTTGCTGGACAAGACCACGCTTCCAGG
GAGACCAGAGTTGAGAGCAGTAGTCCAAATGAGGGATGGCTAGTGCTTTC
CATAAAGTTAACATGGTTTCAATTTCCCTTGATTTGAATATG
Run BLAST on NCBI

transcript from alignment at sc0000400:91340..91631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021955 ID=TCONS_00021955|Name=TCONS_00021955|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000400:91340..91631 (Clytia hemisphaerica)
CATATTCAAATCAAGGGAAATTGAAACCATGTTAACTTTATGGAAAGCAC
TAGCCATCCCTCATTTGGACTACTGCTCTCAACTCTGGTCTCCCTGGAAG
CGTGGTCTTGTCCAGCAACTGGAAGAAGTTcagaaattatttttacatgG
AATTCCATCCCTCAGACATCTCAATTATTGggaaaaactcaaatcattaa
aaCTGTATAGCCTTGAAAGACGGAGAGAGCGGTATCAAATAATTTATACC
TGGAACGTCATTGAAGGCAACGTCCCGAATTTTGATTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012321XLOC_012321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021955-exon-sc0000400-1491911889:91340..91631TCONS_00021955-exon-sc0000400-1491911889:91340..91631Clytia hemisphaericaexon
TCONS_00021955-exon-sc0000400-1510915933:91340..91631TCONS_00021955-exon-sc0000400-1510915933:91340..91631Clytia hemisphaericaexon
TCONS_00021955-exon-sc0000400-1575043694:91340..91631TCONS_00021955-exon-sc0000400-1575043694:91340..91631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:91340..91631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40898	2.75474	8.02709	4.45907	22.7962	20.6583	34.7277	32.4833	16.5493	15.5084	18.3504	27.6162	11.9119	13.0631	4.45264	10.1749	8.60445	5.34109	11.9513	7.96295	4.56727	0	0.151899	2.31241	18.1569	16.4053	2.86396	1.17858	4.52217	1.17425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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