TCONS_00021967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021967
Unique NameTCONS_00021967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021967 ID=TCONS_00021967|Name=TCONS_00021967|organism=Clytia hemisphaerica|type=transcript|length=533bp
cattgaattttctgacttgaaatcGATGAGAATTAAATTacggaatatca
atccccatcgagtttcagtccgttatttatacccccactggctaaaaaaa
tcctaccgcgtctgtgagaaggaggtttTTATCTTTTCTGTAAATTTCTA
TCAATACTATAANGATTTATTTGGGTTCTGTAAATAATCTAATAATTATG
TAATGAATTTATATGTAAATTTGCATGTAAATAAAAGCTCCAATTATTCc
cgaaaataaattaaaaaaagtttatccGATTACTTGTATTACAAAGTAAA
AATGTAACATCCTcggtgaatttcgaaaatttcgaAGGGAAAAGTATCCC
AGCAATACTCGAATTTTGTAATCCCAATTTGGGTTTACTTTTTTCCCCAC
TGACTAGAAATTTCCCACCAGGGCACTGGGGGCGGGGGGATGGTAAATCA
TATATTTTGGTTAATAATAGGAAAATTCATTCCTTCCAagaagatttaaa
aattgttctgtaGACACAAGGTGCGTATCTTTA
Run BLAST on NCBI

transcript from alignment at sc0000401:190669..191256+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021967 ID=TCONS_00021967|Name=TCONS_00021967|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0000401:190669..191256+ (Clytia hemisphaerica)
cattgaattttctgacttgaaatcGATGAGAATTAAATTacggaatatca
atccccatcgagtttcagtccgttatttatacccccactggctaaaaaaa
tcctaccgcgtctgtgagaaggaggtttTTATCTTTTCTGTAAATTTCTA
TCAATACTATAANGGTCTGTAAGAAGGAGGTGTTtatcttttcttaaaat
ttctatcaatactAACAAGATTTATTTGGGTTCTGTAAATAATCTAATAA
TTATGTAATGAATTTATATGTAAATTTGCATGTAAATAAAAGCTCCAATT
ATTCccgaaaataaattaaaaaaagtttatccGATTACTTGTATTACAAA
GTAAAAATGTAACATCCTcggtgaatttcgaaaatttcgaAGGGAAAAGT
ATCCCAGCAATACTCGAATTTTGTAATCCCAATTTGGGTTTACTTTTTTC
CCCACTGACTAGAAATTTCCCACCAGGGCACTGGGGGCGGGGGGATGGTA
AATCATATATTTTGGTTAATAATAGGAAAATTCATTCCTTCCAagaagat
ttaaaaattgttctgtaGACACAAGGTGCGTATCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012332XLOC_012332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021967-exon-sc0000401-1491911889:190669..190832TCONS_00021967-exon-sc0000401-1491911889:190669..190832Clytia hemisphaericaexon
TCONS_00021967-exon-sc0000401-1510915933:190669..190832TCONS_00021967-exon-sc0000401-1510915933:190669..190832Clytia hemisphaericaexon
TCONS_00021967-exon-sc0000401-1575043694:190669..190832TCONS_00021967-exon-sc0000401-1575043694:190669..190832Clytia hemisphaericaexon
TCONS_00021967-exon-sc0000401-1491911889:190888..191256TCONS_00021967-exon-sc0000401-1491911889:190888..191256Clytia hemisphaericaexon
TCONS_00021967-exon-sc0000401-1510915933:190888..191256TCONS_00021967-exon-sc0000401-1510915933:190888..191256Clytia hemisphaericaexon
TCONS_00021967-exon-sc0000401-1575043694:190888..191256TCONS_00021967-exon-sc0000401-1575043694:190888..191256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:190669..191256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.134691	0.123981	0	0	0	1.14515	1.01679	0.46894	0.157288	2.15066	0.356778	1.30362	0.776554	0.588762	3.36632	0.927906	1.05116	0.555794	0.233551	0.303748	0	0.492114	0	1.74436	0.83775	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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