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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021977 ID=TCONS_00021977|Name=TCONS_00021977|organism=Clytia hemisphaerica|type=transcript|length=4371bpRun BLAST on NCBI transcript from alignment at sc0000401:251543..262751+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021977 ID=TCONS_00021977|Name=TCONS_00021977|organism=Clytia hemisphaerica|type=transcript|length=11209bp|location=Sequence derived from alignment at sc0000401:251543..262751+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021977 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 278.87 bits (712), Expect = 1.447e-80 Identity = 194/580 (33.45%), Postives = 299/580 (51.55%), Query Frame = 1
Query: 508 YKNAAVAADHEICSTMGQKILKENNKATAADALVTTHCCVEIVQSHSTGLGGGGFVVYYDKSSGNSHAYDFRETLPY----GYQESTNQTQ--GETVLVPGVLKGLHEVWKDFGEVSWEKLWEPCVNLARNGFTIHDSLANAIEAKEDYIMKNENLKILYAPNGVLLRKGDNFKRPILANTFEKIAKDGGADIFYEGEIAEQIVADIKAAGGRMELSDLKGFKVEKRD-PLKTTVNKLQMLSTPPPGSGALISLALKIMEKFKWSPEN--QYKEQDLLYHNMIEALKFAYAPQTFMGDPNFTKNTDEVAKYMLDDDTAKEMYKRI-DKESHRVEYYKP-FSTAEDVAKTGTTHISILDKSGNGCGATTSINXEDVAKTGTTHISILDKSGNGCGATTSINAYFGSKLRSKELGFIYNNELADFS------EFWQRVYNLTSDKKVPGKKPMSKASPTIFLDKNNDXXXXXXXXXXXXIPTALIQTIANWLFFRNNIAVAVAKPRIHCQLFPPTVVYEPTFPKDLLGPISKYKHEYVTNSTYDVSGQMDAIMGVVQAIVRLPGGKLNAYCDYRKGGKPAGF 2196
Y AAVAAD + CS +G+ L++ +A DA + CV ++ +HS G+GGG F+ Y+ ++ + + RE P S+ Q+Q G +V VPG ++G + G + W +L++P + LAR GF + LA A+E K I + L ++ + +LR+G+ P LA+T+E +A + GA FY G + QIV DI+AAGG + DL ++ E + PL ++ + + P SG +++L L I++ + +S E+ +++ L YH ++EA +FAYA +T +GDP F T EV + M + A ++ +I D +H + YYKP F T +D GT H+S++ + G+ AT++IN YFGSK+RS G ++NNE+ DFS EF V ++ PGK+P+S PTI + ++ V V GAAGG I TA I L+F ++ AV +PR+H QL P E + + + H ST+ + VVQAIVR GG A D RKGG+PAG+
Sbjct: 38 YTRAAVAADAKQCSKIGRDALRDGG--SAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFNSSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQPVLCEVFCRDRKVLREGERLTLPQLADTYETLAIE-GAQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLYMPSAPLSGPVLALILNILKGYNFSRESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVDVT-EVVRNMTSEFFAAQLRAQISDDTTHPISYYKPEFYTPDD---GGTAHLSVVAEDGSAVSATSTINL-----------------------------YFGSKVRSPVSGILFNNEMDDFSSPSITNEFG--VPPSPANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPNVTTVERNIDQAVTAALETRHHHTQIASTF---------IAVVQAIVRTAGG-WAAASDSRKGGEPAGY 569 The following BLAST results are available for this feature:
BLAST of TCONS_00021977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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