Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021982 ID=TCONS_00021982|Name=TCONS_00021982|organism=Clytia hemisphaerica|type=transcript|length=1395bpRun BLAST on NCBI transcript from alignment at sc0000401:76444..80436- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021982 ID=TCONS_00021982|Name=TCONS_00021982|organism=Clytia hemisphaerica|type=transcript|length=3993bp|location=Sequence derived from alignment at sc0000401:76444..80436- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021982 vs. Swiss-Prot (Human)
Match: ZN568 (Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 PE=2 SV=2) HSP 1 Score: 225.713 bits (574), Expect = 9.388e-66 Identity = 132/329 (40.12%), Postives = 185/329 (56.23%), Query Frame = -1 Query: 16 KPFHCTLCGKRFQFFNNLIAHSRFHTKN----------SFEKNVNDI---KIHKQDVPKK-----KSVDTQETSDIKQIILNNTESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQ 942 KP+ C CGK F +NLI H R HT +F + N I +IH + P + KS +Q+ + I+ ++ E Y+ GR + V + RS G+ KC+ CGK++ Q HM +H+ + + C+ CGK F H+++ EKPYEC CG+ FS + +L H +H E + C+ CGK F +SNL +H R+HTG KP+ C VC KAF Q SNL H +IHTGE+P+ C CGKAF Q +L H +IHTGEKPFKC+ CGKAF++ ++L +H+R HTGE+P++C CGKAF Q Sbjct: 276 KPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSF-SQKQNLIEHEKIHTGEKPYACNECGRAFSRM-----SSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHT-GEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQ 597 HSP 2 Score: 212.231 bits (539), Expect = 7.966e-61 Identity = 126/332 (37.95%), Postives = 179/332 (53.92%), Query Frame = -1 Query: 4 KPFHCTLCGKRFQFFNNLIAHSRFHTKN----------SFEKNVNDIKIHKQDVPKKK-------SVDTQETSDIKQIILNNTESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNL 942 KP+ C CGK F NLI H + HT +F + N I+ H+ +K +Q+++ I+ ++ E Y G+ K + ++ G+ C+ CG+++ ++ S+ HM +H+ + ++C CGK F +F H++S EKPY C+ CG+ FS SSL+ H H E + C CGK F NL H ++HTG KP++C C KAF Q SNL H RIHTGE+P+ CTVCGKAF Q +L H +IHTGEKP+ C+ CGKAF+Q L H +IHTGE+P KC CGKAF + +L Sbjct: 248 KPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQ-----KQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHT-GEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSL 573 HSP 3 Score: 211.075 bits (536), Expect = 2.317e-60 Identity = 127/328 (38.72%), Postives = 173/328 (52.74%), Query Frame = -1 Query: 4 KPFHCTLCGKRFQFFNNLIAHSRFHTKN----------SFEKNVNDI---KIHKQDVPKKKSVDTQETSDIKQIILNNTESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNL 942 KP+ C C K F +NLI H R HT SF + N I KIH + P + + S + + L+ + F +C + RS G+ C CGK++ Q SL HM H+ ++ ++C CGK F + H K EKPYEC+ CG+ F S+L +H +H E + C +CGK F SNL +H ++HTG KP+ C+ C KAF Q NL H +IHTGE+P KC CGKAF + L H R HTGEKP++C+ CGKAF+Q + L +H+R HTGE+P +C CGKAF Q +L Sbjct: 304 KPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQC-SVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHT-AEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASL 629 HSP 4 Score: 188.348 bits (477), Expect = 2.622e-52 Identity = 87/179 (48.60%), Postives = 119/179 (66.48%), Query Frame = -1 Query: 16 QCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQ 552 +C CG+ F ++ H + EKPYEC CG+ FS + +L H +H E + CN CGK F +SNL +H R+HTG KP+ C C KAF Q SNL H RIHTGE+P++C CGK+F Q +L H +IHTGEKP+ C+ CG+AF++ +++ +H+R HTGE+P+KC CGKAF Q Sbjct: 223 KCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQ 401 HSP 5 Score: 160.999 bits (406), Expect = 7.330e-43 Identity = 76/151 (50.33%), Postives = 98/151 (64.90%), Query Frame = -1 Query: 22 PYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAF 474 P++C CG+ FS + L +H +H E + C CGK F NL H ++HTG KP+KC+ C KAF Q SNL H RIHTGE+P+ C C KAF Q +L H RIHTGEKP++C CGK+F+Q L H +IHTGE+P+ C CG+AF Sbjct: 221 PFKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAF 371 HSP 6 Score: 151.369 bits (381), Expect = 1.420e-39 Identity = 70/128 (54.69%), Postives = 88/128 (68.75%), Query Frame = -1 Query: 4 FNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNL 387 F CN CG+ F +L +H R+H G KP++C C KAF + NL H +IHTGE+P+KC CGKAF Q +L RHHRIHTGEKP+ C C KAF+Q + L H RIHTGE+P++C CGK+F Q NL Sbjct: 222 FKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNL 349 HSP 7 Score: 149.828 bits (377), Expect = 4.209e-39 Identity = 96/271 (35.42%), Postives = 135/271 (49.82%), Query Frame = -1 Query: 139 KPFHCTLCGKRFQFFNNLIAHSRFHTKNSFEKNVNDIKIHKQDVPKKKSVDTQETSDIKQIILNNT-ESKYSNINQGRHVQSLFMKCKDQVFVDKRSSQGQ--LKCDICGKSYLQLLSLQKHMLTHSESQHHHQCANCGKKFDNRRLFKDHLKSGGCEKPYECTVCGRRFSVESSLSKHSAVHLEENSFNCNLCGKGFKVISNLRKHFRVHTGNKPFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEK 942 KP+ C CGK F + I H R HT K V + ++S + + N+T E Y G+ K+ + ++ G+ +C CGK+++Q+ +L +H H+ + + C CGK F + +H K EKPY C CG+ FS +L +H +H E F CN CGK F IS+L H R HTG KP++C+ C KAF Q S L +H+R HTGE+P +C CGKAF Q L H R HTGE+ Sbjct: 388 KPYKCNKCGKAFSQCSVFIIHMRSHTGE------------KPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSR-----KENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHT-GEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGHTGER 640 HSP 8 Score: 114.005 bits (284), Expect = 6.775e-27 Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = -1 Query: 4 PFKCHVCAKAFEQSSNLQVHLRIHTGERPHKCTVCGKAFKQAHHLKRHHRIHTGEKPFKCHVCGKAFNQSTTLQVHLRIHTGERPHKCTVCGKAFKQAHNL 306 PFKC+ C + F +L H RIH GE+P++C CGKAF + +L H +IHTGEKP+KC+ CGKAF Q + L H RIHTGE+P+ C C KAF Q NL Sbjct: 221 PFKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNL 321 The following BLAST results are available for this feature:
BLAST of TCONS_00021982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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