TCONS_00021985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021985
Unique NameTCONS_00021985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021985 ID=TCONS_00021985|Name=TCONS_00021985|organism=Clytia hemisphaerica|type=transcript|length=626bp
CTTCCTTTTGCAGACTCTGTCAAATACCCTTAAGAAACAAAACGCTATGT
CTTGGAACCAATACATTGACAACTTAATTGCACAATCCAGTGATAATTGT
GATAAAGCTTGCATTATTGGTTTCGATGGCAGTCAATGGACGACCAAAGA
TCATCCGAGCAATCTGAATCTATCGGCTCAAGAAATTGCCACCATCACTC
GAATTTTGAAAAACCGAAACGACCCAACTGAATTTCAATCGAATGGTATC
ACGGTAGAGGGAACAAAATACACTTTCTTACGTCAGCAAGAAAACATGAT
ATTAGGGAAGAAGAAAGATCATGGTGCTGTCACTTTCCAACTAGCTGACA
AATGTATTGTTATCGGGCACACCAAAGAGGGCTCCCAACAGGGAAACGTC
AACAAGGGTGTTAGCACTGTCGCGACGTATCTCAAAGAGGCCGGTTATTG
AGTGCCCTAAAGAACATTTTCAATCTAACTTTCATGTTTCGATTTGAAAA
GAACCTTGCGGAATATGCATTGAAGACTTGTATACAATTtagtttatttt
tgaaatgacAACAATCTGTAGGTGACAAAATATGAGAAAATATGGAgctt
aaaataatttatgatgacaataaatt
Run BLAST on NCBI

protein sequence of TCONS_00021985-protein

>TCONS_00021985-protein ID=TCONS_00021985-protein|Name=TCONS_00021985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
FLLQTLSNTLKKQNAMSWNQYIDNLIAQSSDNCDKACIIGFDGSQWTTKD
HPSNLNLSAQEIATITRILKNRNDPTEFQSNGITVEGTKYTFLRQQENMI
LGKKKDHGAVTFQLADKCIVIGHTKEGSQQGNVNKGVSTVATYLKEAGY
Run BLAST on NCBI

transcript from alignment at sc0000401:106541..108559-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021985 ID=TCONS_00021985|Name=TCONS_00021985|organism=Clytia hemisphaerica|type=transcript|length=2019bp|location=Sequence derived from alignment at sc0000401:106541..108559- (Clytia hemisphaerica)
CTTCCTTTTGCAGACTCTGTCAAATACCCTTAAGAAACAAAACGCTATGT
CTTGGAACCAATACATTGACAACTTAATTGCACAATCCAGTGATAATTGT
GATAAAGCTTGCATTATTGGTTTCGATGGCAGTCAATGGACGACCAAAGA
TCATCCGAGCAATCTGAATCTATCGGCTCAAGAAATTGCCACCATCACTC
GAATTTTGAGTAAGATTTTGTTATTTATTTAAAAAAAAATTTACAAGGCG
TCAGTACAATGCCTATAATAAACCTTATTCAATATCTCGAACTTTAATGC
AAACAAATTTGTATTACCCCTGAGTTTTCCAGTTATGGGGAATACATGAT
AGAGGGTATGCAGCGTTGGCTGCAATGGGAATTTATGACCAAAAAGGGGA
AAATCTGCGATAGCTGAACATGACCCAACCACCACCTGCGGAGTTCATAT
CATCGACCAAAATTGCTTATTCCCAACGCGACATTGCATATAAAATTCTT
CCTTCAAATATAAAATGAAAATTTATCTACTTTTCAGAAAACCGAAACGA
CCCAACTGAATTTCAATCGAATGGTATCACGGTAGAGGGAACAAAATACA
CTTTCTTACGTCAGCAAGAAAACATGATATTAGGTGAGTATTTTCTTTTA
AAAACACCCCTGTCTCACAGCCCCGGTGAAACTTTTTCCCACTGGACTTT
TCCAGAAAAAAATTGAATATGGGGGGTGTAGGATATAACAGTTTTCAGTG
ATTTATGTCCCGGACAAAGTGACTTTTGACCCCCGGACAACCCAAATTAC
CCCCGGACAGAGCACATTTACCCCCCGGACAAGGCAAATCTTGACGATTT
TTCGCTACCCCCCTGGACAATATATCCTCCACCCCCCGTGTACGAACATT
TTCATTGAAATCTCAATGGGGATGAAAATTATATTCTTCCAAGGTAAAAA
TTTCATCCCCCACTGGGGTGGTTTTGGAGTGCAATTTTTAAACATTGAAT
TTCTAATGGGGATGAAATCTAAGTCAATTTCCCAGTCTGGCTGAAATTTC
AGGGTATTTTTCCAACCGGGGACGAAATTTTTGCTAAATTTTTCAGTGGG
GCTGGGGCTCCAGCGGGTGTATGACACAGGGGTGTTTTTAAACACGCATA
CACGTCACAGACCTCCCCCCACACATACCCTATAATTTCAGCTCCACTGC
CAAATTCACTTTGAAATTTATCACCGTTTCAAAAACGATTCCTATTGGAT
TTTGAGCTTGAAACAATAGAATTTCTTTGCCTATTGGGATTTCAAGAGAA
TTCTTTATCCCCACTGTGTGAAAAATCTCCACCGGGGCTGTGAGACGGGA
GTTTATAAGAATCGGTAAATTGTCGAAACATAAGTTCAAGTTACTCTTGA
CCTTATAGAAAGTTGTTCTATTAGAAAAACTGAATCTTTTCCCAATTAAG
TATCCAATTTGAAATTTCGAACCTAAATTGTGGATTTAAATTGGGTTTCA
TACAAAAGCTTTGGCACCGTTTGAAAACTCAGTTTTCTCGAGACTTCGGG
TGTCTTATCATAAAGAAATGATGTGGCTCCGAGCATTGAGTCTACTAGGA
GTTTCATCTGTAGCCCCCTTGGGACACTTTAAGCTCAATGGTTCCGAACT
ATGGTTAGCTTACGGATGGTTAACCTGTTTGTATTATTTTAATATCAGGG
AAGAAGAAAGATCATGGTGCTGTCACTTTCCAACTAGCTGACAAATGTAT
TGTTATCGGGCACACCAAAGAGGGCTCCCAACAGGGAAACGTCAACAAGG
GTGTTAGCACTGTCGCGACGTATCTCAAAGAGGCCGGTTATTGAGTGCCC
TAAAGAACATTTTCAATCTAACTTTCATGTTTCGATTTGAAAAGAACCTT
GCGGAATATGCATTGAAGACTTGTATACAATTTAGTTTATTTTTGAAATG
ACAACAATCTGTAGGTGACAAAATATGAGAAAATATGGAGCTTAAAATAA
TTTATGATGACAATAAATT

Coding sequence (CDS) from alignment at sc0000401:106541..108559-

>TCONS_00021985 ID=TCONS_00021985|Name=TCONS_00021985|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000401:106541..108559- (Clytia hemisphaerica)
GGAAGAAGAAAGATCATGGTGCTGTCACTTTCCAACTAGCTGACAAATGT
ATTGTTATCGGGCACACCAAAGAGGGCTCCCAACAGGGAAACGTCAACAA
GGGTGTTAGCACTGTCGCGACGTATCTCAAAGAGGCCGGTTATTGAAAAA
CCGAAACGACCCAACTGAATTTCAATCGAATGGTATCACGGTAGAGGGAA
CAAAATACACTTTCTTACGTCAGCAAGAAAACATGATATTAGTTCCTTTT
GCAGACTCTGTCAAATACCCTTAAGAAACAAAACGCTATGTCTTGGAACC
AATACATTGACAACTTAATTGCACAATCCAGTGATAATTGTGATAAAGCT
TGCATTATTGGTTTCGATGGCAGTCAATGGACGACCAAAGATCATCCGAG
CAATCTGAATCTATCGGCTCAAGAAATTGCCACCATCACTCGAATTTTGA
GGAAGAAGAAAGATCATGGTGCTGTCACTTTCCAACTAGCTGACAAATGT
ATTGTTATCGGGCACACCAAAGAGGGCTCCCAACAGGGAAACGTCAACAA
GGGTGTTAGCACTGTCGCGACGTATCTCAAAGAGGCCGGTTATTGAAAAA
CCGAAACGACCCAACTGAATTTCAATCGAATGGTATCACGGTAGAGGGAA
CAAAATACACTTTCTTACGTCAGCAAGAAAACATGATATTAGTTCCTTTT
GCAGACTCTGTCAAATACCCTTAAGAAACAAAACGCTATGTCTTGGAACC
AATACATTGACAACTTAATTGCACAATCCAGTGATAATTGTGATAAAGCT
TGCATTATTGGTTTCGATGGCAGTCAATGGACGACCAAAGATCATCCGAG
CAATCTGAATCTATCGGCTCAAGAAATTGCCACCATCACTCGAATTTTGA
GGAAGAAGAAAGATCATGGTGCTGTCACTTTCCAACTAGCTGACAAATGT
ATTGTTATCGGGCACACCAAAGAGGGCTCCCAACAGGGAAACGTCAACAA
GGGTGTTAGCACTGTCGCGACGTATCTCAAAGAGGCCGGTTATTGAAAAA
CCGAAACGACCCAACTGAATTTCAATCGAATGGTATCACGGTAGAGGGAA
CAAAATACACTTTCTTACGTCAGCAAGAAAACATGATATTAGTTCCTTTT
GCAGACTCTGTCAAATACCCTTAAGAAACAAAACGCTATGTCTTGGAACC
AATACATTGACAACTTAATTGCACAATCCAGTGATAATTGTGATAAAGCT
TGCATTATTGGTTTCGATGGCAGTCAATGGACGACCAAAGATCATCCGAG
CAATCTGAATCTATCGGCTCAAGAAATTGCCACCATCACTCGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012339XLOC_012339Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021985-proteinTCONS_00021985-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021985-exon-sc0000401-1575043694:108351..108559TCONS_00021985-exon-sc0000401-1575043694:108351..108559Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1575043694:107927..108022TCONS_00021985-exon-sc0000401-1575043694:107927..108022Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1575043694:106541..106861TCONS_00021985-exon-sc0000401-1575043694:106541..106861Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1510915933:108351..108559TCONS_00021985-exon-sc0000401-1510915933:108351..108559Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1510915933:107927..108022TCONS_00021985-exon-sc0000401-1510915933:107927..108022Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1510915933:106541..106861TCONS_00021985-exon-sc0000401-1510915933:106541..106861Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1491911889:108351..108559TCONS_00021985-exon-sc0000401-1491911889:108351..108559Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1491911889:107927..108022TCONS_00021985-exon-sc0000401-1491911889:107927..108022Clytia hemisphaericaexon
TCONS_00021985-exon-sc0000401-1491911889:106541..106861TCONS_00021985-exon-sc0000401-1491911889:106541..106861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:106541..108559 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44633	1.82523	0.770642	0.753953	3.09779	2.53858	3.71898	2.35525	2.58099	2.48653	4.56838	2.94641	127.821	95.5471	102.949	148.171	48.0288	48.7043	4.34114	5.20516	50.5069	48.0271	55.7982	61.1937	130.623	137.937	13.7658	6.97212	1.41646	1.9242
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005455PFN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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