TCONS_00022006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022006
Unique NameTCONS_00022006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022006 ID=TCONS_00022006|Name=TCONS_00022006|organism=Clytia hemisphaerica|type=transcript|length=844bp
NNATGATGATTTTCACCTATATTTGAAGCGTGATTCAAATGCGTGTTTTG
TAAACAATTATTTTACTGAGGGTCTGAAAGCTTGGCAAGCAAATCTGGAT
ATTCAACCTGTATTTAATTATCACAAGGCTGTTACTTACATGTGTGCATA
TCTGTCGAAAACTGAAGATGGAGTGTCTCATGCTATGAAGTGTCTCATGC
TATGAACCAAGCTGTTCAAGAAGCATTCGAAAACGATTTAGATAAATATC
AGCAAATGAAATCTATTGCGCATTCTTATGTTTCAAAACGGGAAGTATCG
GTGCAAGAAGCTGTATATCTTAGCATGCCTGAATTATGGCTAAGAAATGT
ATTTCCAGGTGCAACTTTTGCAAACACCAATGTACcagagaaaagattta
gaatgTGCCTTAGTGAAAATGAAATAAGTGAGCTTCCTGAAGATAGTACC
TCGATATTCAAAAAGGATATGCTAGACCGATATTGTGATAGACCAACCAA
CAACTATGCTAATGAAATTTAGGTGTCTGTTTCAAACATGTGTTATGCTA
AATTTTTGAGGTTTTATAGTATCATGTATGTAGAGAGTAAAGAAAATGAT
TGCCAGCCCAATGAACTTGTAGATGATCTAGTTGAATCAAATCATCCAAC
AAATAGGTACCCAAATATTGTTCCACTCTTGTCCAGTCGAGATAAACTAA
AATGTCGTAAAGTTCCATTAGTACTCCGTTTTCATGAGCCAAACAGAAAC
AGGCACCCTGAAGATTATGCTCATCATCTGTTAATGcccggggggcactc
gatctgaaaacaaccatacgttcggcccaaaatttggcttctaa
Run BLAST on NCBI

protein sequence of TCONS_00022006-protein

>TCONS_00022006-protein ID=TCONS_00022006-protein|Name=TCONS_00022006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MNQAVQEAFENDLDKYQQMKSIAHSYVSKREVSVQEAVYLSMPELWLRNV
FPGATFANTNVPEKRFRMCLSENEISELPEDSTSIFKKDMLDRYCDRPTN
NYANEI
Run BLAST on NCBI

transcript from alignment at sc0000401:20395..21238

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022006 ID=TCONS_00022006|Name=TCONS_00022006|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000401:20395..21238 (Clytia hemisphaerica)
ttagaagccaaattttgggccgaacgtatggttgttttcagatcgagtgc
cccccgggCATTAACAGATGATGAGCATAATCTTCAGGGTGCCTGTTTCT
GTTTGGCTCATGAAAACGGAGTACTAATGGAACTTTACGACATTTTAGTT
TATCTCGACTGGACAAGAGTGGAACAATATTTGGGTACCTATTTGTTGGA
TGATTTGATTCAACTAGATCATCTACAAGTTCATTGGGCTGGCAATCATT
TTCTTTACTCTCTACATACATGATACTATAAAACCTCAAAAATTTAGCAT
AACACATGTTTGAAACAGACACCTAAATTTCATTAGCATAGTTGTTGGTT
GGTCTATCACAATATCGGTCTAGCATATCCTTTTTGAATATCGAGGTACT
ATCTTCAGGAAGCTCACTTATTTCATTTTCACTAAGGCAcattctaaatc
ttttctctgGTACATTGGTGTTTGCAAAAGTTGCACCTGGAAATACATTT
CTTAGCCATAATTCAGGCATGCTAAGATATACAGCTTCTTGCACCGATAC
TTCCCGTTTTGAAACATAAGAATGCGCAATAGATTTCATTTGCTGATATT
TATCTAAATCGTTTTCGAATGCTTCTTGAACAGCTTGGTTCATAGCATGA
GACACTTCATAGCATGAGACACTCCATCTTCAGTTTTCGACAGATATGCA
CACATGTAAGTAACAGCCTTGTGATAATTAAATACAGGTTGAATATCCAG
ATTTGCTTGCCAAGCTTTCAGACCCTCAGTAAAATAATTGTTTACAAAAC
ACGCATTTGAATCACGCTTCAAATATAGGTGAAAATCATCATNN

Coding sequence (CDS) from alignment at sc0000401:20395..21238

>TCONS_00022006 ID=TCONS_00022006|Name=TCONS_00022006|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000401:20395..21238 (Clytia hemisphaerica)
CTAAATTTCATTAGCATAGTTGTTGGTTGGTCTATCACAATATCGGTCTA
GCATATCCTTTTTGAATATCGAGGTACTATCTTCAGGAAGCTCACTTATT
TCATTTTCACTAAGGCAcattctaaatcttttctctgGTACATTGGTGTT
TGCAAAAGTTGCACCTGGAAATACATTTCTTAGCCATAATTCAGGCATGC
TAAGATATACAGCTTCTTGCACCGATACTTCCCGTTTTGAAACATAAGAA
TGCGCAATAGATTTCATTTGCTGATATTTATCTAAATCGTTTTCGAATGC
TTCTTGAACAGCTTGGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012353XLOC_012353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022006-proteinTCONS_00022006-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022006-exon-sc0000401-1491911889:20395..21238TCONS_00022006-exon-sc0000401-1491911889:20395..21238Clytia hemisphaericaexon
TCONS_00022006-exon-sc0000401-1510915933:20395..21238TCONS_00022006-exon-sc0000401-1510915933:20395..21238Clytia hemisphaericaexon
TCONS_00022006-exon-sc0000401-1575043694:20395..21238TCONS_00022006-exon-sc0000401-1575043694:20395..21238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:20395..21238 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76875	2.8844	2.15183	2.37531	1.75302	1.03729	1.29403	1.5046	1.15659	1.4411	1.33003	1.48785	1.02945	1.03156	1.01723	1.08299	0.79646	1.12495	1.49747	1.02968	2.76315	2.67718	1.27	1.05443	0.719828	1.50315	1.96508	2.00647	1.4944	2.01973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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