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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022020 ID=TCONS_00022020|Name=TCONS_00022020|organism=Clytia hemisphaerica|type=transcript|length=1315bp
GATCAAACCAAAAATAAATGGACTCTGCACATTGCGATGAATGCAACTTG
GCACACAGTGCTACAGGTAGGAATGTCACCAACAAAGTTGACAATAGCGC
cgttgaaatttcaaaactcaAGGAAGACCATGACAAGCAGATTCAAAAAT
TGACATTCGAAAATCGCATCAAAATTCTTGAATTGGAGAAAGAAATGTCC
AAACAAGACAACGAacaaaagatgaagattttaaagctTGAAAAAGACAA
TCAATCTTTAAGTCATGAATTTGAATTCATGAAGTTGAAAACCTCACACG
AGATGGAGGGTAAGAAAGTTGTGCTTGATTGTGAAATGGAAAAAGAAATG
CTGAAAcagcaaaaagaatttcagaACAGACTGTCAGAAAAAGACAAGGC
ACTGTTagaaaaagacaatgaaattactgCCAAGGAAAACGAATGCAAAG
CGAAAATAAATGAAATGGAGAAATCATTACTTGTGAAAGAGTATGAGTAC
CAAACAAAAATAGCTGCCAAGGAAAACGAATTGACATCGAAAATGAAACA
TATAGAACATACCAATACAgttaaatttttggaaatggaaaaagaaaaag
agtttgTCATCCAATCTCTTCGTCACAAAATTGAGATGTTAGAAGCTAGC
AAAATTTTAGAGCTGCATAAAGAATTCAAGCCGGAAGTTTTACCATCATC
GGAAAGTGAAGATGGTCCAGTTTTGAAAAAGGAACACTTATCGATTCTGC
AACCAGTAAACTTAAAACAAACAAGCAAGTCAATCGCTACCACGGAAGAT
AAACTTCTCTGGGGTGTTAAGAAACACTTCCTTGGTATGGAAACAGAACC
AAATCTTTTCACATCATATGAGGATTGGTACGAAGCTATGTCGTCATTAT
TGGAAAATGAAGTACAAAAATTTGTGAAACAAGGAAAAAGAagatattat
tttatcagaaaagaaATGCCTGGTTATTGCTCTCCTTTGTTCCTTCTTAC
CAAAAGAAAGCACGACGGAGAGATGGACGGACCTCAGACTCTCAGTGTAG
AATACCCAAATAGAGCAGACCTGAAAAATGCAAGATCATTTTTATTGCAC
CCTGAACAAagaaaccagtgtattcatacCACAACGTTTGATTGTTACCT
TAAAGATTGTGAAGACTGGTTGTTCTCTAACGTTTCAGAAAACCATTACT
TCGGTGAAAAGAAATCTgttattgttttcttttatctttaaagaataaac
attttttaatggTTTAATTGGTAAAGCTGGTAAAAAAGTATCACGTATAA
GATTTCGCAGAGAAA Run BLAST on NCBI protein sequence of TCONS_00022020-protein >TCONS_00022020-protein ID=TCONS_00022020-protein|Name=TCONS_00022020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MDSAHCDECNLAHSATGRNVTNKVDNSAVEISKLKEDHDKQIQKLTFENR
IKILELEKEMSKQDNEQKMKILKLEKDNQSLSHEFEFMKLKTSHEMEGKK
VVLDCEMEKEMLKQQKEFQNRLSEKDKALLEKDNEITAKENECKAKINEM
EKSLLVKEYEYQTKIAAKENELTSKMKHIEHTNTVKFLEMEKEKEFVIQS
LRHKIEMLEASKILELHKEFKPEVLPSSESEDGPVLKKEHLSILQPVNLK
QTSKSIATTEDKLLWGVKKHFLGMETEPNLFTSYEDWYEAMSSLLENEVQ
KFVKQGKRRYYFIRKEMPGYCSPLFLLTKRKHDGEMDGPQTLSVEYPNRA
DLKNARSFLLHPEQRNQCIHTTTFDCYLKDCEDWLFSNVSENHYFGEKKS
VIVFFYL Run BLAST on NCBI transcript from alignment at sc0000401:247999..249313 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022020 ID=TCONS_00022020|Name=TCONS_00022020|organism=Clytia hemisphaerica|type=transcript|length=1315bp|location=Sequence derived from alignment at sc0000401:247999..249313 (Clytia hemisphaerica)
TTTCTCTGCGAAATCTTATACGTGATACTTTTTTACCAGCTTTACCAATT
AAAccattaaaaaatgtttattctttaaagataaaagaaaacaataacAG
ATTTCTTTTCACCGAAGTAATGGTTTTCTGAAACGTTAGAGAACAACCAG
TCTTCACAATCTTTAAGGTAACAATCAAACGTTGTGgtatgaatacactg
gtttctTTGTTCAGGGTGCAATAAAAATGATCTTGCATTTTTCAGGTCTG
CTCTATTTGGGTATTCTACACTGAGAGTCTGAGGTCCGTCCATCTCTCCG
TCGTGCTTTCTTTTGGTAAGAAGGAACAAAGGAGAGCAATAACCAGGCAT
ttcttttctgataaaataatatctTCTTTTTCCTTGTTTCACAAATTTTT
GTACTTCATTTTCCAATAATGACGACATAGCTTCGTACCAATCCTCATAT
GATGTGAAAAGATTTGGTTCTGTTTCCATACCAAGGAAGTGTTTCTTAAC
ACCCCAGAGAAGTTTATCTTCCGTGGTAGCGATTGACTTGCTTGTTTGTT
TTAAGTTTACTGGTTGCAGAATCGATAAGTGTTCCTTTTTCAAAACTGGA
CCATCTTCACTTTCCGATGATGGTAAAACTTCCGGCTTGAATTCTTTATG
CAGCTCTAAAATTTTGCTAGCTTCTAACATCTCAATTTTGTGACGAAGAG
ATTGGATGAcaaactctttttctttttccatttccaaaaatttaacTGTA
TTGGTATGTTCTATATGTTTCATTTTCGATGTCAATTCGTTTTCCTTGGC
AGCTATTTTTGTTTGGTACTCATACTCTTTCACAAGTAATGATTTCTCCA
TTTCATTTATTTTCGCTTTGCATTCGTTTTCCTTGGcagtaatttcattg
tctttttctAACAGTGCCTTGTCTTTTTCTGACAGTCTGTtctgaaattc
tttttgctgTTTCAGCATTTCTTTTTCCATTTCACAATCAAGCACAACTT
TCTTACCCTCCATCTCGTGTGAGGTTTTCAACTTCATGAATTCAAATTCA
TGACTTAAAGATTGATTGTCTTTTTCAagctttaaaatcttcatcttttg
tTCGTTGTCTTGTTTGGACATTTCTTTCTCCAATTCAAGAATTTTGATGC
GATTTTCGAATGTCAATTTTTGAATCTGCTTGTCATGGTCTTCCTtgagt
tttgaaatttcaacgGCGCTATTGTCAACTTTGTTGGTGACATTCCTACC
TGTAGCACTGTGTGCCAAGTTGCATTCATCGCAATGTGCAGAGTCCATTT
ATTTTTGGTTTGATC Coding sequence (CDS) from alignment at sc0000401:247999..249313 >TCONS_00022020 ID=TCONS_00022020|Name=TCONS_00022020|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000401:247999..249313 (Clytia hemisphaerica)
ttaaagataaaagaaaacaataacAGATTTCTTTTCACCGAAGTAATGGT
TTTCTGAAACGTTAGAGAACAACCAGTCTTCACAATCTTTAAGGTAACAA
TCAAACGTTGTGgtatgaatacactggtttctTTGTTCAGGGTGCAATAA
AAATGATCTTGCATTTTTCAGGTCTGCTCTATTTGGGTATTCTACACTGA
GAGTCTGAGGTCCGTCCATCTCTCCGTCGTGCTTTCTTTTGGTAAGAAGG
AACAAAGGAGAGCAATAACCAGGCATttcttttctgataaaataatatct
TCTTTTTCCTTGTTTCACAAATTTTTGTACTTCATTTTCCAATAATGACG
ACATAGCTTCGTACCAATCCTCATATGATGTGAAAAGATTTGGTTCTGTT
TCCATACCAAGGAAGTGTTTCTTAACACCCCAGAGAAGTTTATCTTCCGT
GGTAGCGATTGACTTGCTTGTTTGTTTTAAGTTTACTGGTTGCAGAATCG
ATAAGTGTTCCTTTTTCAAAACTGGACCATCTTCACTTTCCGATGATGGT
AAAACTTCCGGCTTGAATTCTTTATGCAGCTCTAAAATTTTGCTAGCTTC
TAACATCTCAATTTTGTGACGAAGAGATTGGATGAcaaactctttttctt
tttccatttccaaaaatttaacTGTATTGGTATGTTCTATATGTTTCATT
TTCGATGTCAATTCGTTTTCCTTGGCAGCTATTTTTGTTTGGTACTCATA
CTCTTTCACAAGTAATGATTTCTCCATTTCATTTATTTTCGCTTTGCATT
CGTTTTCCTTGGcagtaatttcattgtctttttctAACAGTGCCTTGTCT
TTTTCTGACAGTCTGTtctgaaattctttttgctgTTTCAGCATTTCTTT
TTCCATTTCACAATCAAGCACAACTTTCTTACCCTCCATCTCGTGTGAGG
TTTTCAACTTCATGAATTCAAATTCATGACTTAAAGATTGATTGTCTTTT
TCAagctttaaaatcttcatcttttgtTCGTTGTCTTGTTTGGACATTTC
TTTCTCCAATTCAAGAATTTTGATGCGATTTTCGAATGTCAATTTTTGAA
TCTGCTTGTCATGGTCTTCCTtgagttttgaaatttcaacgGCGCTATTG
TCAACTTTGTTGGTGACATTCCTACCTGTAGCACTGTGTGCCAAGTTGCA
TTCATCGCAATGTGCAGAGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022020-exon-sc0000401-1491911889:247999..249313 | TCONS_00022020-exon-sc0000401-1491911889:247999..249313 | Clytia hemisphaerica | exon |
| TCONS_00022020-exon-sc0000401-1510915933:247999..249313 | TCONS_00022020-exon-sc0000401-1510915933:247999..249313 | Clytia hemisphaerica | exon |
| TCONS_00022020-exon-sc0000401-1575043694:247999..249313 | TCONS_00022020-exon-sc0000401-1575043694:247999..249313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:247999..249313 . |
Blast
The following BLAST results are available for this feature:
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