TCONS_00022034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022034
Unique NameTCONS_00022034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022034 ID=TCONS_00022034|Name=TCONS_00022034|organism=Clytia hemisphaerica|type=transcript|length=1270bp
tagttaccatgataaatttttttctcataaaattCATACTGTACACATAA
ATTTATAACTTCTCAAACATACGAAAAAAACTGAACAAATTTACGTAGAT
GCGTtataaaaatctaatttttagtTCCATTAAATTAATTAACATCAGCG
CTTTGAATTTCTAGCAAGGTAAAACATgcgcaaaaaaaataattcccaAA
TAAAGAATTAATTAATCAATTAATAAGATTAACTGCTGTACATAGGTACA
TGTCATACGAAAACAAGAATTCTGGATTCCTTGAAAGCGCAAAATTAGGG
CTCAAAATGGCTATACATATGTTATTGTATCCTTGAATTAGAGCCAAGTT
TGAAGATATGTTATGTGATTGTTGGACTTTACGGCTGAGTGCTTACTGGA
AAACGTAGGTTTGTCCCAAATTTATTCATCGCTTATTTTGGACATTAAAT
TTACGAAATACAAAAATTTCGCCTTGAAAAAGGCTGAGaacaaaaggtga
aaaatgTTCAacgtttaaaaattgaaatagtTGAACGATCACTCTATAAA
GCTACCATGTGAAGACGGTTACGTACCCAGTTTTGTCGTAAAAATCTTAA
TCTAAATTACAAGAGAAGaatAGACATCTGTCGCCCAATAAAAATGTCCT
TCTCTTTATATTAACGATTGATAAATTAAACCTTATATCGATCTCCCGAC
TCCACACTCAGTCGAGGTCAGTTGAGCTGACAATGGTTGGCAGACTGTTA
CTGGTCGATGATTGGTTCTCCATACCGTACACGTGGTATAATACGNTTAT
TTTGGACATTAAATTTACGAAATACAAAAATTTCGCCTTGAAAAAGGCTG
AGaacaaaaggtgaaaaatgTTCAacgtttaaaaattgaaatagtTGAAC
GATCACTCTATAAAGCTACCATGTGAAGACGGTTACGTACCCAGTTTTGT
CGTAAAAATCTTAATCTAAATTACAAGAgaagaatagacgatATCTGTCG
CCCAATAAAAATGTCCTTCTCTTTATATTAACGATTGATAAATTAAACCT
TTTATCGATCTACCGACTCCGCACTCAGTCGAGGTCAGTTGAGCTGACAA
TGGTTGGCAGACTGTTACTGGTCGATGATTGGTTCTCCATACCGTACACG
TGGTATAATACGAATTTCGCCAGATCGAGGCTATGCCAATATGCCTGGTG
AGAAGTGATAGCAGAGAAATATTCGACCATCGATTGCTCTAACACGTAAT
CTAGTCGATTGTCCAGAACT
Run BLAST on NCBI

transcript from alignment at sc0000403:4742..6343-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022034 ID=TCONS_00022034|Name=TCONS_00022034|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at sc0000403:4742..6343- (Clytia hemisphaerica)
TAGTTACCATGATAAATTTTTTTCTCATAAAATTCATACTGTACACATAA
ATTTATAACTTCTCAAACATACGAAAAAAACTGAACAAATTTACGTAGAT
GCGTTATAAAAATCTAATTTTTAGTTCCATTAAATTAATTAACATCAGCG
CTTTGAATTTCTAGCAAGGTAAAACATGCGCAAAAAAAATAATTCCCAAA
TAAAGAATTAATTAATCAATTAATAAGATTAACTGCTGTACATAGGTACA
TGTCATACGAAAACAAGAATTCTGGATTCCTTGAAAGCGCAAAATTAGGG
CTCAAAATGGCTATACATATGTTATTGTATCCTTGAATTAGAGCCAAGTT
TGAAGATATGTTATGTGATTGTTGGACTTTACGGCTGAGTGCTTACTGGA
AAACGTAGGTTTGTCCCAAATTTATTCATCGCTTATTTTGGACATTAAAT
TTACGAAATACAAAAATTTCGCCTTGAAAAAGGCTGAGAACAAAAGGTGA
AAAATGTTCAACGTTTAAAAATTGAAATAGTTGAACGATCACTCTATAAA
GCTACCATGTGAAGACGGTTACGTACCCAGTTTTGTCGTAAAAATCTTAA
TCTAAATTACAAGAGAAGAATATCGCGTTTAGATAAATGCAATGCATTCT
GGTTTCTCGGGGACTCTCAAAGGAATTATAATGTCGATTATATAATGATC
TGGAATAGATTATAATTTCCTTGAGGGTCCCCGAGAAACCAGAATGCATT
GCATTTATCTAAACGCGATATCGTCTATTCCCGACAGACATCTGTCGCCC
AATAAAAATGTCCTTCTCTTTATATTAACGATTGATAAATTAAACCTTAT
ATCGATCTCCCGACTCCACACTCAGTCGAGGTCAGTTGAGCTGACAATGG
TTGGCAGACTGTTACTGGTCGATGATTGGTTCTCCATACCGTACACGTGG
TATAATACGNTTATTTTGGACATTAAATTTACGAAATACAAAAATTTCGC
CTTGAAAAAGGCTGAGAACAAAAGGTGAAAAATGTTCAACGTTTAAAAAT
TGAAATAGTTGAACGATCACTCTATAAAGCTACCATGTGAAGACGGTTAC
GTACCCAGTTTTGTCGTAAAAATCTTAATCTAAATTACAAGAGAAGAATA
GACGATATCGCGTTTAGATAAATGCAATGCATTCTGGTTTCTCGGGGACT
CTCAAAGGAATTATAATGTTGATTATATAATGATCTGGAATAGATTATAA
TTTCCTTGAGGGTCCCCGAGAAACCAGAATGCATTGCATTTATCTAAACG
CGATATCGTCTATTCCCGACAGACATCTGTCGCCCAATAAAAATGTCCTT
CTCTTTATATTAACGATTGATAAATTAAACCTTTTATCGATCTACCGACT
CCGCACTCAGTCGAGGTCAGTTGAGCTGACAATGGTTGGCAGACTGTTAC
TGGTCGATGATTGGTTCTCCATACCGTACACGTGGTATAATACGAATTTC
GCCAGATCGAGGCTATGCCAATATGCCTGGTGAGAAGTGATAGCAGAGAA
ATATTCGACCATCGATTGCTCTAACACGTAATCTAGTCGATTGTCCAGAA
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012374XLOC_012374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022034-exon-sc0000403-1575043694:5723..6343TCONS_00022034-exon-sc0000403-1575043694:5723..6343Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1575043694:5188..5558TCONS_00022034-exon-sc0000403-1575043694:5188..5558Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1575043694:4742..5019TCONS_00022034-exon-sc0000403-1575043694:4742..5019Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1510915933:5723..6343TCONS_00022034-exon-sc0000403-1510915933:5723..6343Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1510915933:5188..5558TCONS_00022034-exon-sc0000403-1510915933:5188..5558Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1510915933:4742..5019TCONS_00022034-exon-sc0000403-1510915933:4742..5019Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1491911889:5723..6343TCONS_00022034-exon-sc0000403-1491911889:5723..6343Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1491911889:5188..5558TCONS_00022034-exon-sc0000403-1491911889:5188..5558Clytia hemisphaericaexon
TCONS_00022034-exon-sc0000403-1491911889:4742..5019TCONS_00022034-exon-sc0000403-1491911889:4742..5019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:4742..6343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.101865	0	0	0.129969	0	0.378162	0.167734	0	0	0.455807	0.0732017	0.356945	0.200375	0.100699	0.249535	0	0	0.114561	0	0	0.232407	0.1153	0	0.240488	0.521252	0	0.273932	0	0.105571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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