TCONS_00022088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022088
Unique NameTCONS_00022088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022088 ID=TCONS_00022088|Name=TCONS_00022088|organism=Clytia hemisphaerica|type=transcript|length=382bp
GACTCTCTCGTGATATTGTTGCCCTAATTTGACCATAGAGTCTTCAAGAC
GATGCTATCGCACCTTACAATTCAATAAATAGCAAGAAATACTGTTTCTA
GCGCGAATCCAAAAGAAGAGTGAATGCTCATGCTATGAACGTGTCTGCTC
TTCCTCCATCTCCAGTGTCTTTTATACAATGTCTAAATAGATCGTTACGA
CGTTCTAAAAACGTTCACCCCTCTGAAGAAGGGAGCTTGCTTTACTAAAC
CATATGGTTATAAACTGCACATGACAAATCGACCAGACCGTTTTGAGGTT
GTTCTAGAAGTCTTCTTGGCAGTTATAGAGGcagattgtttttttattaa
ctTAATGTTTTTTCATGAAACTTTTCTTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000403:234173..234554

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022088 ID=TCONS_00022088|Name=TCONS_00022088|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0000403:234173..234554 (Clytia hemisphaerica)
GTTGAAGAAAAGTTTCATGAAAAAACATTAagttaataaaaaaacaatct
gCCTCTATAACTGCCAAGAAGACTTCTAGAACAACCTCAAAACGGTCTGG
TCGATTTGTCATGTGCAGTTTATAACCATATGGTTTAGTAAAGCAAGCTC
CCTTCTTCAGAGGGGTGAACGTTTTTAGAACGTCGTAACGATCTATTTAG
ACATTGTATAAAAGACACTGGAGATGGAGGAAGAGCAGACACGTTCATAG
CATGAGCATTCACTCTTCTTTTGGATTCGCGCTAGAAACAGTATTTCTTG
CTATTTATTGAATTGTAAGGTGCGATAGCATCGTCTTGAAGACTCTATGG
TCAAATTAGGGCAACAATATCACGAGAGAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012387XLOC_012387Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022088-exon-sc0000403-1491911889:234173..234554TCONS_00022088-exon-sc0000403-1491911889:234173..234554Clytia hemisphaericaexon
TCONS_00022088-exon-sc0000403-1510915933:234173..234554TCONS_00022088-exon-sc0000403-1510915933:234173..234554Clytia hemisphaericaexon
TCONS_00022088-exon-sc0000403-1575043694:234173..234554TCONS_00022088-exon-sc0000403-1575043694:234173..234554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:234173..234554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820295	0.199979	0	0	0	0.218536	0	0.24683	1.03687	0	0.623301	0.273156	0.272776	0.849842	0.46579	0.249932	0	0.315584	0.871991	0.912476	0.198277	0	0	0	0.220179	0.393008	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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