TCONS_00022102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022102
Unique NameTCONS_00022102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022102 ID=TCONS_00022102|Name=TCONS_00022102|organism=Clytia hemisphaerica|type=transcript|length=1233bp
aaaaagaTTGACAAAAGCTGACATATCACTTATACACAAGTTGCAAATTA
TTTGGTGGTTTATGATATTCTCTCAAACAGCTTAAATGGAAACTGAAAAT
TTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGCT
TGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAGATT
TTAAGAAAGGGTTAACAGAGGACGATCACATGACTTCAACACATGCAATA
AACAGTTGTCCAATAGAACCAGAAAATGACGATGACACAGTCGAGACTCC
ATTAAAgcagaaaatcattaaaaatcggattttatCGGATTCAGAAAGCG
ACGAAAATGAATCTGATCGGGAAAATGCTGATGACATCAAAGATTCATCT
AACCAGaatctaaacaaaaataaaaaccgGATTTTGTCGGATTCAGAAAA
CGGGGAAAATGAATCCGATCGGGATGAACAAGAAGTTCCAGCGATGTCCG
ATAAAAAATCATCAGATgataagattgaagaattcggATCACAAAAAGAA
TTGGAGAAGTCATTGGCTGAATGTTCACAATCTGATGAATcgaagaaaga
aaaatcatcTTCCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTC
AATGTGATACTTGTGAAAAATGGCGATGTGTGGATACAGTTGATGACATT
CATTCGTTGGCTAACGGCAAATGGGTTTGTGCTATGAATGATGACGATAG
ACGTAACAAGTGCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAG
AAGTTGATGAATCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTC
GGAAAAATGGCCGGATACCCATGgtggCCAGGGATTATCGAAGACGATCC
AGACTTTGAAAGTTTCTTTTACTTGGAgaacaaaaatgataaaattgctG
CTAGTTATCACGTGACATTTTTCGACAAAGATGTTTCACGAGCTTGGTTA
ACTGATTATTGCGTCCGACCTTTCACTGGGAAAGAGGATCTCAAAGATCT
CGGCACCATGTCGTTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAAAGG
CTATTGAAGATGCTAAGAAAGCGCTTGGATATTCACCAGAGAAGCGAGTT
GACAAATATGGCTTTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAA
AGACAGTGACAAAGGTTTGGAGGAAGATTGGAC
Run BLAST on NCBI

protein sequence of TCONS_00022102-protein

>TCONS_00022102-protein ID=TCONS_00022102-protein|Name=TCONS_00022102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
METENLEEFVDLEFCSALSDKLEKLSDSLVEGETLEKDFKKGLTEDDHMT
STHAINSCPIEPENDDDTVETPLKQKIIKNRILSDSESDENESDRENADD
IKDSSNQNLNKNKNRILSDSENGENESDRDEQEVPAMSDKKSSDDKIEEF
GSQKELEKSLAECSQSDESKKEKSSSKKSGKRSSSSWVQCDTCEKWRCVD
TVDDIHSLANGKWVCAMNDDDRRNKCELSQESIPESDEEVDESSYVTYKP
GNLVLGKMAGYPWWPGIIEDDPDFESFFYLENKNDKIAASYHVTFFDKDV
SRAWLTDYCVRPFTGKEDLKDLGTMSFSGKNYARGVSKAIEDAKKALGYS
PEKRVDKYGFLKRFKNKRGSKKDSDKGLEEDW
Run BLAST on NCBI

transcript from alignment at sc0000405:211104..215851+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022102 ID=TCONS_00022102|Name=TCONS_00022102|organism=Clytia hemisphaerica|type=transcript|length=4748bp|location=Sequence derived from alignment at sc0000405:211104..215851+ (Clytia hemisphaerica)
aaaaagaTTGACAAAAGCTGACATATCACTTATACACAAGTTGCAAATTA
TTTGGTGGTTTATGATATTCTCTCAAACAGCTTAAATGGAAACTGAAAAT
TTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGGT
ACAAGAATCTCGTATTATTCATTATGCTCCAAGTTCAAGTCATGTAGAGT
TTACCCAGACTTTCCAAAAGTCCAGTAACTATTACGTATAGAAGGGTCGA
TTCTTTAGGGGTAGCTTTGAAAATAGTAACTAAAGTATTCAATTCCTCCT
TTTGAAGTCCTTTTCTTTTGAAGCTGTTTGaaggccttttcataaaatgA
GTTATTTTTAGTGGAACGACTGCCTCTTTTTAAAACCATTACCatggtga
ttttttaaatagaGTGAACTCcttatgaaatatattttgaaaattaggta
AGCGTTGCTGatgacgtaatttataaaaaggtgTATTGCCTGAGAGATAT
TCCACGTTGTTCGATTTTATACCCCTAATCATTTTCCTACTTCTTTTCTA
GCTTGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAG
ATTTTAAGAAAGGTATGAAGCTTATTGAATCATTCTGAAGTTCTTACTAG
CTTTTGATATGTTCATTATATGTTTAGCTAGTCCTTCTATGTCTANACTG
AAGTTCTTACTAGCTTTTAATATGTTCATATTATTATATGTTTAGCTAGT
CCTTCTATGTCTACAGTTTCTCTAAGTCAGAATCaggttttttaagaaat
ttaggAAATTTGTGATAATTTTGATGATCGCTCATTTTTTATATAATGAT
CCAAAATTTACTAACTTCATCCCTGTCCTCAACAATCCGTCCGTTTCTAC
TTAATAACAATATGTTATTAAATTTAGGCCCGCCATGTTATCGGTGTTTA
ACTTATAGGAATCTTGCTTTTGTACACTGGATATCCCTTTCCTCCTACTA
TGAATGTaaaggtttttcatgttttattaaGTTACgtcattatggaagca
aacttCGAATCTGTAGGGGCGGTCCTTTACGTTAATCGAACGTTCGCTTC
CAAAATGGCGGAAATGACTTAACAAAACGTGAAAAACTTCTACAGTGTgg
tctttttaaccaatcatgAACTTGTATTGTTAAGGGTTAACAGAGGACGA
TCACATGACTTCAACACATGCAATAAACAGTTGTCCAATAGAACCAGAAA
ATGACGATGACACAGTCGAGACTCCATTAAAgcagaaaatcattaaaaat
cggattttatCGGATTCAGAAAGCGACGAAAATGAATCTGATCGGGAAAA
TGCTGATGACATCAAAGATTCATCTAACCAGaatctaaacaaaaataaaa
accgGATTTTGTCGGATTCAGAAAACGGGGAAAATGAATCCGATCGGGAT
GAACAAGAAGTTCCAGCGATGTCCGATAAAAAATCATCAGATgataagat
tgaagaattcggATCACAAAAAGAATTGGAGAAGTCATTGGCTGAATGTT
CACAAGTGAGAGACGTTCTTAAAACTACTGAAAGTTTAAAGCCTGCCCAA
AATATTCTGATTAGTGGTTGGTTATACTTATATAAATTACTCAAAGCTTA
TTATTTTAGAAGGAGAAAAATCAATAATTTCACTCCAATATGACGTCtct
tgagaacggaccgagttCAAAACATGtcgagaaaaatcaaaatataatag
ctgCATTCTTTTTCACTGTTCAACACACTCCAATATGATATAACGAATGG
TACTTTTATCGACTTTTTGGGAAACGACTTTTATAAATTTAGAGGGGTCA
GTGAATTAAaacacttgaaaaaaattttcattatttaaaaGCGATGGAAA
CTTAGTGGGAATTTGTAATTAGTTTTTAAAAGTCTGTAAAAAGTCTTAAG
CTTCAGAGGTTCTTACTTCTTCAGATGTAAAATTATACTAAAACTTATCT
CGTAGTCTGATGAATcgaagaaagaaaaatcatcTTCCAAAAAGTCAGGA
AAGCGCTCCTCCAGCTCTTGGGTTCAATGTGATACTTGTGAAAAATGGCG
ATGTGTGGATACAGTTGATGACATTCATTCGTTGGCTAACGGCAAATGGG
TTTGTGCTATGAATGATGGTGAGAATTGTTCTTCGAATATTTGACGAATT
CTCGCCATTTCGTAGTTTTTGGTTTTAGAAAACTAGATCTTTTTGCCCAA
CTTTTCTACTTTATTTTAACCAGTTTCGATTAAAGTATATTTGCTTTAAG
TTTGAACTCTTTTTTTGCTATCATATGGAAAACACTTTCTAGGGAATTCT
TTCAACCACGCTGAGATGGTTGTAGCAAGAGATTGCAGCAAAAGAGAGTG
GACACTGAAAGTGAATTGACTTTAATTTCTAAGTCTTTAAGTAAGTAAGA
AAGCTCATTTTTTGGCTTTCTATAGAGCCGGGAGTAaggtaggctacgtc
atatcttccttcgtttcaaGCGTAAAACGCCTACTCTGCGTAAgacctaa
aagcctggagctgtctattgtgtagactagggGTAAGGGAGCCCTTCCCC
ATATTTTGATAACCCATCTTTGCCTTTTATAGACGATAGACGTAACAAGT
GCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTTGATGAA
TCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAAAATGGC
CGGATACCCATGGTGAGTTTTAAAAAACATTATAGAAAATCGATCATCGA
GATTTTCCCTTAAAAATCTCGATGATATACATTGCAGTGACTATTACTCA
AAAATGACTATGTTTATTTCCTGTAGAATTTCCGTTAGtagaatttttat
aaaaaaagttcaagTCGTGTCCATGGTCAAAAACGTCAACAGTCTCGATA
AaacgtctttttttatttctgatattttttacCCTTAACAAGACTTGGAC
AACTTTTAATTAACTAAttctactttaatcggattaaatttcgcgtgatt
aaatttcgcgagcgaaaaaaatcgcgaaattttcgcgagtcagagctttg
aaaaatttcgcatGGATTTAGTTTCGCGAATATgcctgaaaacagctgaa
aatagccatttttttgCCACAAATGGAGACTTTGGACTGCTTTCTCCTCC
Aaaattttgtggtggatttaatttaatttcgcgagtcaggaatctcacgc
gttttcgcgagttttaatggcaaaaattcgcgaaatcgcgaaattcaatC
TCGCGAAAGTTAACCCGATTAAAGtattcgttctttttttttcaggtggC
CAGGGATTATCGAAGACGATCCAGACTTTGAAAGTTTCTTTTACTTGGAg
aacaaaaatgataaaattgctGTAAGAATGTCTTGAACAAATTAGGGTGC
TGGTATTCCACTAATGTGTTGGTTTTTAATACTACCTGGAGTTTTGGAGA
GCCCTAAGAGACTATGACCAAataattttggtcaaaaaattgatcaGGTC
TTAATTGAATAACACAATATATCCAACAACGCGTTTCAATCAATTTCTTT
GGTCTTGAAAAAAGCTCTTTTATACTTTCGCACATTACTTTTCCTAACCG
TAATAAATTAAACTTCTTGTTATAGAATTTGGTATTACCTTATCAGTCCT
CATTTAGTGCGGGCCTCTCTTACCCCGGCTCTAACCACGCTAGCGACGTA
AAACTATCACCAATAAGGACTTAAGAACCGATGTGTTATAGAATTCGGTA
CTATATGTATTATTCACGATTTCCAGGCTAGTTATCACGTGACATTTTTC
GACAAAGATGTTTCACGAGCTTGGTTAACTGATTATTGCGTCCGACCTTT
CACTGGGAAAGAGGATCTCAAAGATCTCGGCACCGTAAGTatagtatttt
tattttttaatacttGATAATAGGAAAACATAAGCATGAGTCAATAACTT
TTGCAACGATGTACGTGGAAAAGGTTTGGAAGCAAACAAACAATTCGTAG
TACTTTTTTACttattgattttttgtttactaTACATAGATGTCGTCTTC
CGGGGAAAAAAATATGAACGAAAACAAGCAagatacaaaaataaatttgg
aaCGCACACCATTTTACAGAGCAGACAGCACCAAGGCCCTGTTTTAGTAA
TCaattgtttctctttttttgatACATAGATGTCGTTTTCCGGAAAGAAT
TATGCCCGTGGTGTTTCAAAGGCTATTGAAGATGCTAAGAAAGCGCTTGG
ATATTCACCAGAGGTTTGTGtacattttaaagatttcttttgtagtGTGA
TAGAACCAAGTTACGTTTTAAGTGAAGctgaaaatttggctgaatcttTT
TGCATCTTGTTGTGGAACCTCCAGAAATATTCTACACCAATCAACTActt
tgatgatgttttttttttcagtagaATCTCTTATAAAGTATGGTTGATTG
AAACAGGAATTTAGATTCGATATAAgctttttctttaaagttaaGTTAAA
GCTTTGTTTTGCTATAAGCATAGACTTTTTTGGGTTGTTGGTTTGGGCAT
CATTGAAAGATTATCTTCAAGATCTcttgattttaaatttcaatttcaca
TTTTAGAAGCGAGTTGACAAATATGGCTTTTTGAAGAGGTTCAAGAACAA
AAGAGGTTCTAAGAAAGACAGTGACAAAGGTTTGGAGGAAGATTGGAC

Coding sequence (CDS) from alignment at sc0000405:211104..215851+

>TCONS_00022102 ID=TCONS_00022102|Name=TCONS_00022102|organism=Clytia hemisphaerica|type=CDS|length=10314bp|location=Sequence derived from alignment at sc0000405:211104..215851+ (Clytia hemisphaerica)
ATGGAAACTGAAAATTTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGC
ATTGAGTGACAAGCTTGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAA
CACTCGAGAAAGATTTTAAGAAAGGGTTAACAGAGGACGATCACATGACT
TCAACACATGCAATAAACAGTTGTCCAATAGAACCAGAAAATGACGATGA
CACAGTCGAGACTCCATTAAAgcagaaaatcattaaaaatcggattttat
CGGATTCAGAAAGCGACGAAAATGAATCTGATCGGGAAAATGCTGATGAC
ATCAAAGATTCATCTAACCAGaatctaaacaaaaataaaaaccgGATTTT
GTCGGATTCAGAAAACGGGGAAAATGAATCCGATCGGGATGAACAAGAAG
TTCCAGCGATGTCCGATAAAAAATCATCAGATgataagattgaagaattc
ggATCACAAAAAGAATTGGAGAAGTCATTGGCTGAATGTTCACAATCTGA
TGAATcgaagaaagaaaaatcatcTTCCAAAAAGTCAGGAAAGCGCTCCT
CCAGCTCTTGGGTTCAATGTGATACTTGTGAAAAATGGCGATGTGTGGAT
ACAGTTGATGACATTCATTCGTTGGCTAACGGCAAATGGGTTTGTGCTAT
GAATGATGACGATAGACGTAACAAGTGCGAGCTGTCACAAGAAAGCATCC
CGGAAAGTGACGAAGAAGTTGATGAATCCTCATACGTCACTTATAAACCG
GGAAATCTCGTCCTCGGAAAAATGGCCGGATACCCATGgtggCCAGGGAT
TATCGAAGACGATCCAGACTTTGAAAGTTTCTTTTACTTGGAgaacaaaa
atgataaaattgctGCTAGTTATCACGTGACATTTTTCGACAAAGATGTT
TCACGAGCTTGGTTAACTGATTATTGCGTCCGACCTTTCACTGGGAAAGA
GGATCTCAAAGATCTCGGCACCATGTCGTTTTCCGGAAAGAATTATGCCC
GTGGTGTTTCAAAGGCTATTGAAGATGCTAAGAAAGCGCTTGGATATTCA
CCAGAGAAGCGAGTTGACAAATATGGCTTTTTGAAGAGGTTCAAGAACAA
AAGAGGTTCTAAGAAAGACAGTGACAAAGGTTTGGAGGAAGATTGGATGG
AAACTGAAAATTTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTG
AGTGACAAGCTTGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACT
CGAGAAAGATTTTAAGAAAGGGTTAACAGAGGACGATCACATGACTTCAA
CACATGCAATAAACAGTTGTCCAATAGAACCAGAAAATGACGATGACACA
GTCGAGACTCCATTAAAgcagaaaatcattaaaaatcggattttatCGGA
TTCAGAAAGCGACGAAAATGAATCTGATCGGGAAAATGCTGATGACATCA
AAGATTCATCTAACCAGaatctaaacaaaaataaaaaccgGATTTTGTCG
GATTCAGAAAACGGGGAAAATGAATCCGATCGGGATGAACAAGAAGTTCC
AGCGATGTCCGATAAAAAATCATCAGATgataagattgaagaattcggAT
CACAAAAAGAATTGGAGAAGTCATTGGCTGAATGTTCACAATCTGATGAA
TcgaagaaagaaaaatcatcTTCCAAAAAGTCAGGAAAGCGCTCCTCCAG
CTCTTGGGTTCAATGTGATACTTGTGAAAAATGGCGATGTGTGGATACAG
TTGATGACATTCATTCGTTGGCTAACGGCAAATGGGTTTGTGCTATGAAT
GATGACGATAGACGTAACAAGTGCGAGCTGTCACAAGAAAGCATCCCGGA
AAGTGACGAAGAAGTTGATGAATCCTCATACGTCACTTATAAACCGGGAA
ATCTCGTCCTCGGAAAAATGGCCGGATACCCATGgtggCCAGGGATTATC
GAAGACGATCCAGACTTTGAAAGTTTCTTTTACTTGGAgaacaaaaatga
taaaattgctGCTAGTTATCACGTGACATTTTTCGACAAAGATGTTTCAC
GAGCTTGGTTAACTGATTATTGCGTCCGACCTTTCACTGGGAAAGAGGAT
CTCAAAGATCTCGGCACCATGTCGTTTTCCGGAAAGAATTATGCCCGTGG
TGTTTCAAAGGCTATTGAAGATGCTAAGAAAGCGCTTGGATATTCACCAG
AGAAGCGAGTTGACAAATATGGCTTTTTGAAGAGGTTCAAGAACAAAAGA
GGTTCTAAGAAAGACAGTGACAAAGGTTTGGAGGAAGATTGGATGGAAAC
TGAAAATTTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTG
ACAAGCTTGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAG
AAAGATTTTAAGAAAGGGTTAACAGAGGACGATCACATGACTTCAACACA
TGCAATAAACAGTTGTCCAATAGAACCAGAAAATGACGATGACACAGTCG
AGACTCCATTAAAgcagaaaatcattaaaaatcggattttatCGGATTCA
GAAAGCGACGAAAATGAATCTGATCGGGAAAATGCTGATGACATCAAAGA
TTCATCTAACCAGaatctaaacaaaaataaaaaccgGATTTTGTCGGATT
CAGAAAACGGGGAAAATGAATCCGATCGGGATGAACAAGAAGTTCCAGCG
ATGTCCGATAAAAAATCATCAGATgataagattgaagaattcggATCACA
AAAAGAATTGGAGAAGTCATTGGCTGAATGTTCACAATCTGATGAATcga
agaaagaaaaatcatcTTCCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCT
TGGGTTCAATGTGATACTTGTGAAAAATGGCGATGTGTGGATACAGTTGA
TGACATTCATTCGTTGGCTAACGGCAAATGGGTTTGTGCTATGAATGATG
ACGATAGACGTAACAAGTGCGAGCTGTCACAAGAAAGCATCCCGGAAAGT
GACGAAGAAGTTGATGAATCCTCATACGTCACTTATAAACCGGGAAATCT
CGTCCTCGGAAAAATGGCCGGATACCCATGgtggCCAGGGATTATCGAAG
ACGATCCAGACTTTGAAAGTTTCTTTTACTTGGAgaacaaaaatgataaa
attgctGCTAGTTATCACGTGACATTTTTCGACAAAGATGTTTCACGAGC
TTGGTTAACTGATTATTGCGTCCGACCTTTCACTGGGAAAGAGGATCTCA
AAGATCTCGGCACCATGTCGTTTTCCGGAAAGAATTATGCCCGTGGTGTT
TCAAAGGCTATTGAAGATGCTAAGAAAGCGCTTGGATATTCACCAGAGAA
GCGAGTTGACAAATATGGCTTTTTGAAGAGGTTCAAGAACAAAAGAGGTT
CTAAGAAAGACAGTGACAAAGGTTTGGAGGAAGATTGGATGGAAACTGAA
AATTTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAA
GCTTGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAG
ATTTTAAGAAAGGGTTAACAGAGGACGATCACATGACTTCAACACATGCA
ATAAACAGTTGTCCAATAGAACCAGAAAATGACGATGACACAGTCGAGAC
TCCATTAAAgcagaaaatcattaaaaatcggattttatCGGATTCAGAAA
GCGACGAAAATGAATCTGATCGGGAAAATGCTGATGACATCAAAGATTCA
TCTAACCAGaatctaaacaaaaataaaaaccgGATTTTGTCGGATTCAGA
AAACGGGGAAAATGAATCCGATCGGGATGAACAAGAAGTTCCAGCGATGT
CCGATAAAAAATCATCAGATgataagattgaagaattcggATCACAAAAA
GAATTGGAGAAGTCATTGGCTGAATGTTCACAATCTGATGAATcgaagaa
agaaaaatcatcTTCCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGG
TTCAATGTGATACTTGTGAAAAATGGCGATGTGTGGATACAGTTGATGAC
ATTCATTCGTTGGCTAACGGCAAATGGGTTTGTGCTATGAATGATGACGA
TAGACGTAACAAGTGCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACG
AAGAAGTTGATGAATCCTCATACGTCACTTATAAACCGGGAAATCTCGTC
CTCGGAAAAATGGCCGGATACCCATGgtggCCAGGGATTATCGAAGACGA
TCCAGACTTTGAAAGTTTCTTTTACTTGGAgaacaaaaatgataaaattg
ctGCTAGTTATCACGTGACATTTTTCGACAAAGATGTTTCACGAGCTTGG
TTAACTGATTATTGCGTCCGACCTTTCACTGGGAAAGAGGATCTCAAAGA
TCTCGGCACCATGTCGTTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAA
AGGCTATTGAAGATGCTAAGAAAGCGCTTGGATATTCACCAGAGAAGCGA
GTTGACAAATATGGCTTTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAA
GAAAGACAGTGACAAAGGTTTGGAGGAAGATTGGATGGAAACTGAAAATT
TGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGCTT
GAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAGATTT
TAAGAAAGGGTTAACAGAGGACGATCACATGACTTCAACACATGCAATAA
ACAGTTGTCCAATAGAACCAGAAAATGACGATGACACAGTCGAGACTCCA
TTAAAgcagaaaatcattaaaaatcggattttatCGGATTCAGAAAGCGA
CGAAAATGAATCTGATCGGGAAAATGCTGATGACATCAAAGATTCATCTA
ACCAGaatctaaacaaaaataaaaaccgGATTTTGTCGGATTCAGAAAAC
GGGGAAAATGAATCCGATCGGGATGAACAAGAAGTTCCAGCGATGTCCGA
TAAAAAATCATCAGATgataagattgaagaattcggATCACAAAAAGAAT
TGGAGAAGTCATTGGCTGAATGTTCACAATCTGATGAATcgaagaaagaa
aaatcatcTTCCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTCA
ATGTGATACTTGTGAAAAATGGCGATGTGTGGATACAGTTGATGACATTC
ATTCGTTGGCTAACGGCAAATGGGTTTGTGCTATGAATGATGACGATAGA
CGTAACAAGTGCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGA
AGTTGATGAATCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCG
GAAAAATGGCCGGATACCCATGgtggCCAGGGATTATCGAAGACGATCCA
GACTTTGAAAGTTTCTTTTACTTGGAgaacaaaaatgataaaattgctGC
TAGTTATCACGTGACATTTTTCGACAAAGATGTTTCACGAGCTTGGTTAA
CTGATTATTGCGTCCGACCTTTCACTGGGAAAGAGGATCTCAAAGATCTC
GGCACCATGTCGTTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAAAGGC
TATTGAAGATGCTAAGAAAGCGCTTGGATATTCACCAGAGAAGCGAGTTG
ACAAATATGGCTTTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAAA
GACAGTGACAAAGGTTTGGAGGAAGATTGGATGGAAACTGAAAATTTGGA
AGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGCTTGAAA
AACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAGATTTTAAG
AAAGGGTTAACAGAGGACGATCACATGACTTCAACACATGCAATAAACAG
TTGTCCAATAGAACCAGAAAATGACGATGACACAGTCGAGACTCCATTAA
AgcagaaaatcattaaaaatcggattttatCGGATTCAGAAAGCGACGAA
AATGAATCTGATCGGGAAAATGCTGATGACATCAAAGATTCATCTAACCA
GaatctaaacaaaaataaaaaccgGATTTTGTCGGATTCAGAAAACGGGG
AAAATGAATCCGATCGGGATGAACAAGAAGTTCCAGCGATGTCCGATAAA
AAATCATCAGATgataagattgaagaattcggATCACAAAAAGAATTGGA
GAAGTCATTGGCTGAATGTTCACAATCTGATGAATcgaagaaagaaaaat
catcTTCCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTCAATGT
GATACTTGTGAAAAATGGCGATGTGTGGATACAGTTGATGACATTCATTC
GTTGGCTAACGGCAAATGGGTTTGTGCTATGAATGATGACGATAGACGTA
ACAAGTGCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTT
GATGAATCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAA
AATGGCCGGATACCCATGgtggCCAGGGATTATCGAAGACGATCCAGACT
TTGAAAGTTTCTTTTACTTGGAgaacaaaaatgataaaattgctGCTAGT
TATCACGTGACATTTTTCGACAAAGATGTTTCACGAGCTTGGTTAACTGA
TTATTGCGTCCGACCTTTCACTGGGAAAGAGGATCTCAAAGATCTCGGCA
CCATGTCGTTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAAAGGCTATT
GAAGATGCTAAGAAAGCGCTTGGATATTCACCAGAGAAGCGAGTTGACAA
ATATGGCTTTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAAAGACA
GTGACAAAGGTTTGGAGGAAGATTGGATGGAAACTGAAAATTTGGAAGAG
TTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGCTTGAAAAACT
TAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAGATTTTAAGAAAG
GGTTAACAGAGGACGATCACATGACTTCAACACATGCAATAAACAGTTGT
CCAATAGAACCAGAAAATGACGATGACACAGTCGAGACTCCATTAAAgca
gaaaatcattaaaaatcggattttatCGGATTCAGAAAGCGACGAAAATG
AATCTGATCGGGAAAATGCTGATGACATCAAAGATTCATCTAACCAGaat
ctaaacaaaaataaaaaccgGATTTTGTCGGATTCAGAAAACGGGGAAAA
TGAATCCGATCGGGATGAACAAGAAGTTCCAGCGATGTCCGATAAAAAAT
CATCAGATgataagattgaagaattcggATCACAAAAAGAATTGGAGAAG
TCATTGGCTGAATGTTCACAATCTGATGAATcgaagaaagaaaaatcatc
TTCCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTCAATGTGATA
CTTGTGAAAAATGGCGATGTGTGGATACAGTTGATGACATTCATTCGTTG
GCTAACGGCAAATGGGTTTGTGCTATGAATGATGACGATAGACGTAACAA
GTGCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTTGATG
AATCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAAAATG
GCCGGATACCCATGgtggCCAGGGATTATCGAAGACGATCCAGACTTTGA
AAGTTTCTTTTACTTGGAgaacaaaaatgataaaattgctGCTAGTTATC
ACGTGACATTTTTCGACAAAGATGTTTCACGAGCTTGGTTAACTGATTAT
TGCGTCCGACCTTTCACTGGGAAAGAGGATCTCAAAGATCTCGGCACCAT
GTCGTTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAAAGGCTATTGAAG
ATGCTAAGAAAGCGCTTGGATATTCACCAGAGAAGCGAGTTGACAAATAT
GGCTTTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAAAGACAGTGA
CAAAGGTTTGGAGGAAGATTGGATGGAAACTGAAAATTTGGAAGAGTTCG
TTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGCTTGAAAAACTTAGT
GATAGTTTAGTCGAAGGAGAAACACTCGAGAAAGATTTTAAGAAAGGGTT
AACAGAGGACGATCACATGACTTCAACACATGCAATAAACAGTTGTCCAA
TAGAACCAGAAAATGACGATGACACAGTCGAGACTCCATTAAAgcagaaa
atcattaaaaatcggattttatCGGATTCAGAAAGCGACGAAAATGAATC
TGATCGGGAAAATGCTGATGACATCAAAGATTCATCTAACCAGaatctaa
acaaaaataaaaaccgGATTTTGTCGGATTCAGAAAACGGGGAAAATGAA
TCCGATCGGGATGAACAAGAAGTTCCAGCGATGTCCGATAAAAAATCATC
AGATgataagattgaagaattcggATCACAAAAAGAATTGGAGAAGTCAT
TGGCTGAATGTTCACAATCTGATGAATcgaagaaagaaaaatcatcTTCC
AAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTCAATGTGATACTTG
TGAAAAATGGCGATGTGTGGATACAGTTGATGACATTCATTCGTTGGCTA
ACGGCAAATGGGTTTGTGCTATGAATGATGACGATAGACGTAACAAGTGC
GAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTTGATGAATC
CTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAAAATGGCCG
GATACCCATGgtggCCAGGGATTATCGAAGACGATCCAGACTTTGAAAGT
TTCTTTTACTTGGAgaacaaaaatgataaaattgctGCTAGTTATCACGT
GACATTTTTCGACAAAGATGTTTCACGAGCTTGGTTAACTGATTATTGCG
TCCGACCTTTCACTGGGAAAGAGGATCTCAAAGATCTCGGCACCATGTCG
TTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAAAGGCTATTGAAGATGC
TAAGAAAGCGCTTGGATATTCACCAGAGAAGCGAGTTGACAAATATGGCT
TTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAAAGACAGTGACAAA
GGTTTGGAGGAAGATTGGATGGAAACTGAAAATTTGGAAGAGTTCGTTGA
TCTTGAATTTTGCAGTGCATTGAGTGACAAGCTTGAAAAACTTAGTGATA
GTTTAGTCGAAGGAGAAACACTCGAGAAAGATTTTAAGAAAGGGTTAACA
GAGGACGATCACATGACTTCAACACATGCAATAAACAGTTGTCCAATAGA
ACCAGAAAATGACGATGACACAGTCGAGACTCCATTAAAgcagaaaatca
ttaaaaatcggattttatCGGATTCAGAAAGCGACGAAAATGAATCTGAT
CGGGAAAATGCTGATGACATCAAAGATTCATCTAACCAGaatctaaacaa
aaataaaaaccgGATTTTGTCGGATTCAGAAAACGGGGAAAATGAATCCG
ATCGGGATGAACAAGAAGTTCCAGCGATGTCCGATAAAAAATCATCAGAT
gataagattgaagaattcggATCACAAAAAGAATTGGAGAAGTCATTGGC
TGAATGTTCACAATCTGATGAATcgaagaaagaaaaatcatcTTCCAAAA
AGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTCAATGTGATACTTGTGAA
AAATGGCGATGTGTGGATACAGTTGATGACATTCATTCGTTGGCTAACGG
CAAATGGGTTTGTGCTATGAATGATGACGATAGACGTAACAAGTGCGAGC
TGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTTGATGAATCCTCA
TACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAAAATGGCCGGATA
CCCATGgtggCCAGGGATTATCGAAGACGATCCAGACTTTGAAAGTTTCT
TTTACTTGGAgaacaaaaatgataaaattgctGCTAGTTATCACGTGACA
TTTTTCGACAAAGATGTTTCACGAGCTTGGTTAACTGATTATTGCGTCCG
ACCTTTCACTGGGAAAGAGGATCTCAAAGATCTCGGCACCATGTCGTTTT
CCGGAAAGAATTATGCCCGTGGTGTTTCAAAGGCTATTGAAGATGCTAAG
AAAGCGCTTGGATATTCACCAGAGAAGCGAGTTGACAAATATGGCTTTTT
GAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAAAGACAGTGACAAAGGTT
TGGAGGAAGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012394XLOC_012394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022102-exon-sc0000405-1491911889:211104..211251TCONS_00022102-exon-sc0000405-1491911889:211104..211251Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:211104..211251TCONS_00022102-exon-sc0000405-1510915933:211104..211251Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:211104..211251TCONS_00022102-exon-sc0000405-1575043694:211104..211251Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:211655..211715TCONS_00022102-exon-sc0000405-1491911889:211655..211715Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:211655..211715TCONS_00022102-exon-sc0000405-1510915933:211655..211715Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:211655..211715TCONS_00022102-exon-sc0000405-1575043694:211655..211715Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:212288..212658TCONS_00022102-exon-sc0000405-1491911889:212288..212658Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:212288..212658TCONS_00022102-exon-sc0000405-1510915933:212288..212658Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:212288..212658TCONS_00022102-exon-sc0000405-1575043694:212288..212658Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:213109..213271TCONS_00022102-exon-sc0000405-1491911889:213109..213271Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:213109..213271TCONS_00022102-exon-sc0000405-1510915933:213109..213271Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:213109..213271TCONS_00022102-exon-sc0000405-1575043694:213109..213271Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:213736..213865TCONS_00022102-exon-sc0000405-1491911889:213736..213865Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:213736..213865TCONS_00022102-exon-sc0000405-1510915933:213736..213865Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:213736..213865TCONS_00022102-exon-sc0000405-1575043694:213736..213865Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:214449..214524TCONS_00022102-exon-sc0000405-1491911889:214449..214524Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:214449..214524TCONS_00022102-exon-sc0000405-1510915933:214449..214524Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:214449..214524TCONS_00022102-exon-sc0000405-1575043694:214449..214524Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:214930..215037TCONS_00022102-exon-sc0000405-1491911889:214930..215037Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:214930..215037TCONS_00022102-exon-sc0000405-1510915933:214930..215037Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:214930..215037TCONS_00022102-exon-sc0000405-1575043694:214930..215037Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:215333..215416TCONS_00022102-exon-sc0000405-1491911889:215333..215416Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:215333..215416TCONS_00022102-exon-sc0000405-1510915933:215333..215416Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:215333..215416TCONS_00022102-exon-sc0000405-1575043694:215333..215416Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1491911889:215760..215851TCONS_00022102-exon-sc0000405-1491911889:215760..215851Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1510915933:215760..215851TCONS_00022102-exon-sc0000405-1510915933:215760..215851Clytia hemisphaericaexon
TCONS_00022102-exon-sc0000405-1575043694:215760..215851TCONS_00022102-exon-sc0000405-1575043694:215760..215851Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022102-proteinTCONS_00022102-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:211104..215851 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.74337	1.05916	0	3.13729	1.23957	2.24322	0.700027	0.583813	0.607074	0	0.661132	0.549001	1.2051	0.288253	0.928865	1.85545	1.41453	0	0.814893	0.821297	1.6457	0.666854	0.817589	34.9687	46.5113	0.797492	0	0.645533	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom
IPR011124Znf_CW
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00022102 vs. Swiss-Prot (Human)
Match: ZCPW1 (Zinc finger CW-type PWWP domain protein 1 OS=Homo sapiens GN=ZCWPW1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.207e-26
Identity = 66/191 (34.55%), Postives = 103/191 (53.93%), Query Frame = 2 
Query:  644 WVQCD--TCEKWRCVDTVDDIHSLANGKWVCAMNDDDRRNKCELSQXXXXXXXXXXXXXXYVTYKPGNLVLGKMAGYPWWPGIIEDDPDFESFFYLENKNDKIAASYHVTFFDKDVSRAWLTDYCVRPFTGKEDLKDLGTMSFSGKNYARGVSKAIEDAKKALGYSPEKRVDKYGFLKRF--KNKRGSKKD 1204
            WVQC    C KWR +    D   L +  W C  N D + N+C++ +E+    + +V    Y +Y PG+++  K  GYPWWPG+IE DPD   +F   +  D + + YHVTFF + VSRAW+    ++ F  +E   +L  M     + ++ +  A+  A++A   S ++RV+ +GF  RF   N  G +KD
Sbjct:  256 WVQCSFPNCGKWRRLCGNIDPSVLPD-NWSCDQNTDVQYNRCDIPEETWTGLESDVA---YASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNMLKNF--QELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGFWSRFNGSNSNGERKD 440
The following BLAST results are available for this feature:
BLAST of TCONS_00022102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCPW12.207e-2634.55Zinc finger CW-type PWWP domain protein 1 OS=Homo ... [more]
back to top