|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022108 ID=TCONS_00022108|Name=TCONS_00022108|organism=Clytia hemisphaerica|type=transcript|length=1892bp
gttctgtttcataatAGATGTCAAGACTTTTaatgcgaaatatattgcta
tacaatgaaaaataaattacgCATTGATAAATAACAGTTATATCATTCAA
AATATATATGACGTGGAGGTTTTTCCTATTGCCATAAATCTGGTTCAGAA
TACACAAGAATCTTTTTGATTGTCAACGATGATTTGGTATTATGGTCTGG
TGACAGTGTTGTTTGTTTCGAGTTGGATTTCAAAATCTCAAGGAACTGTG
GACCAACATCTTATCCAACAAATGTCAGAACTTCTTCAATTTGAAAACAA
TTGTACTGAAACTCTAAAGAATGCTATAATATCCGCTAAAAATCTTCAGC
AGGACCCAAACTATagattattgaaaaatattttcaaaaacaacaatAGC
AAAAAGTATTTCAAATTACCACGAAACAGTCATCTTTATGGATCGTTCCA
TGAACTTTCAGGAGGCTACAGTGCTAGGCTATTCCAATCTGTTGGCACTT
TACAAAAAACGTGTTCCATTCTGTCTAATTCAACTGTGAATTCTTGCATA
GACCGAAGGGTAGATACTAGACTATCAGAAGATCAATGGGTTGATATAGA
TCATGCGCTTTACGTAGATATACCATCCAGTGCAAAACTCTTAATTTCAG
ACGTACCAGCAAAACGAGGCTATGTAACAATCAAAAGCTCTGACCGAATT
TTACGCAAAATGACGAAAGACAAAAAGGAGAAACGCGTAAAACTTGTTAA
AAAGTTTGTAACAGTAGATGGTTATTTAAGCAGTGTTAAACTTATTGACA
ACACTTATAGGAATAATGCAAGAGGATTGAAGCTCAAGAATGGATATTTA
GAACCAATCATAcaggatatttttgaaaaagatgtgTCTTATAAAGCTAG
CActtcaaagtcaagacggctTATATTATATGAATTAACTTGGAGAGAAA
CTATTAAAATGAATAATGATCGAAGAGAAAATAAAAAGGATGGTCAGGTT
GAACCCTCACAGTATTACCAGCAAGATGTTTGGAGGGTTAAGTCAAACTC
CATTCATCTTTTCAGGACCCAATGGTGGCCTACTGTTGCCAACGAATGGA
AAACACGTGACCGCGCATGGCCAAAGAAAGAATTGATTCATCAAATGACA
CGTTATGCTTTTCTCAAACCGACCAGCATTGATAAACATTTTAAATATAG
ATTCACCCACATTGAGAAGTTACTTACAGGCTTGCGGACTCCTGATCAAA
ATCTAAACTTGTTTATcttgaaagttttattttataaatttgtGAAACCC
ATCTCTCCTAATACACTACAAACATTCACCGTTAAATCAACTATGATGTG
GGCGTGCGAACAATATCCGCCCGACCACCCTTGGTGGAAAATTGATAAAG
GTTGTACACCCTTAAAAATGGTGTATTACATGCTCGAGAGAATGAGGGTT
GATTTTCAACGCGATCATTTGGCTGACTATTTTTTACCTTCCAACAACGT
TATAAAACGAACGTCTGATGCGACTCGTCGGAAAATCGTAAATGTTCTAA
CCGAACTCATCCAGACTAGAAACTTACTCACTCTAATCTCTTCGGACGAT
ATAGCAAATGCTAAAAATATAATCGCTCGGacaagaaaaactttaaaaac
agcTGACGATTTTGTACAAAAAGGTTTGGAAGATGGACTTTTAATCACAT
TGTCTCGAAAACCAAAATTGCTTGTTCGATTGACCAAAAATAAAGTTCGA
AATCGGATTAAAAAATCGGGTTTATTATCCAAAATAGGTTACATTTTGTT
TGTGACGAGTTTCCCGATTTTATGTggtcttttttattgttttataacca
aatttgttttaaaaagaaaataattttatgtttaaatctttc Run BLAST on NCBI transcript from alignment at sc0000405:18570..20788- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022108 ID=TCONS_00022108|Name=TCONS_00022108|organism=Clytia hemisphaerica|type=transcript|length=2219bp|location=Sequence derived from alignment at sc0000405:18570..20788- (Clytia hemisphaerica)
GTTCTGTTTCATAATAGATGTCAAGACTTTTAATGCGAAATATATTGCTA
TACAATGAAAAATAAATTACGCATTGATAAATAACAGTTATATCATTCAA
AATATATATGACGTGGAGGTTTTTCCTATTGCCATAAATCTGGTTCAGAA
TACACAAGAATCTTTTTGATTGTCAACGATGATTTGGTATTATGGTCTGG
TGACAGTGTTGTTTGTTTCGAGTTGGATTTCAAAATCTCAAGGTACATGT
ATTTCTAATCTTTAGAAAAAGTTGATTTTTTTTACAGTTATAGTCGACTC
TCTCTAATTCGAACTTCTATTATTCAAATCTTTCTGTAATTCGAATAAAA
ATACAGTTCCCCTCAGCTTGAAAGATCCTCTCCGTAATTCGAATGATTCC
TTAATTCGAAGAAAACTTTTGGTCCTTTGAAAATCGAATTAGAGAGTGTC
TACTGTAATAAACTTACGGATGGGTCATAGACTTCCAATAAAATCGTCCA
CACAATTTTTGATTTGAAATGATTGTTAATTATCAAATCTAGGTATATAA
TTATTTTTCTTTATGATAGGAACTGTGGACCAACATCTTATCCAACAAAT
GTCAGAACTTCTTCAATTTGAAAACAATTGTACTGAAACTCTAAAGAATG
CTATAATATCCGCTAAAAATCTTCAGCAGGACCCAAACTATAGATTATTG
AAAAATATTTTCAAAAACAACAATAGCAAAAAGTATTTCAAATTACCACG
AAACAGTCATCTTTATGGATCGTTCCATGAACTTTCAGGAGGCTACAGTG
CTAGGCTATTCCAATCTGTTGGCACTTTACAAAAAACGTGTTCCATTCTG
TCTAATTCAACTGTGAATTCTTGCATAGACCGAAGGGTAGATACTAGACT
ATCAGAAGATCAATGGGTTGATATAGATCATGCGCTTTACGTAGATATAC
CATCCAGTGCAAAACTCTTAATTTCAGACGTACCAGCAAAACGAGGCTAT
GTAACAATCAAAAGCTCTGACCGAATTTTACGCAAAATGACGAAAGACAA
AAAGGAGAAACGCGTAAAACTTGTTAAAAAGTTTGTAACAGTAGATGGTT
ATTTAAGCAGTGTTAAACTTATTGACAACACTTATAGGAATAATGCAAGA
GGATTGAAGCTCAAGAATGGATATTTAGAACCAATCATACAGGATATTTT
TGAAAAAGATGTGTCTTATAAAGCTAGCACTTCAAAGTCAAGACGGCTTA
TATTATATGAATTAACTTGGAGAGAAACTATTAAAATGAATAATGATCGA
AGAGAAAATAAAAAGGATGGTCAGGTTGAACCCTCACAGTATTACCAGCA
AGATGTTTGGAGGGTTAAGTCAAACTCCATTCATCTTTTCAGGACCCAAT
GGTGGCCTACTGTTGCCAACGAATGGAAAACACGTGACCGCGCATGGCCA
AAGAAAGAATTGATTCATCAAATGACACGTTATGCTTTTCTCAAACCGAC
CAGCATTGATAAACATTTTAAATATAGATTCACCCACATTGAGAAGTTAC
TTACAGGCTTGCGGACTCCTGATCAAAATCTAAACTTGTTTATCTTGAAA
GTTTTATTTTATAAATTTGTGAAACCCATCTCTCCTAATACACTACAAAC
ATTCACCGTTAAATCAACTATGATGTGGGCGTGCGAACAATATCCGCCCG
ACCACCCTTGGTGGAAAATTGATAAAGGTTGTACACCCTTAAAAATGGTG
TATTACATGCTCGAGAGAATGAGGGTTGATTTTCAACGCGATCATTTGGC
TGACTATTTTTTACCTTCCAACAACGTTATAAAACGAACGTCTGATGCGA
CTCGTCGGAAAATCGTAAATGTTCTAACCGAACTCATCCAGACTAGAAAC
TTACTCACTCTAATCTCTTCGGACGATATAGCAAATGCTAAAAATATAAT
CGCTCGGACAAGAAAAACTTTAAAAACAGCTGACGATTTTGTACAAAAAG
GTTTGGAAGATGGACTTTTAATCACATTGTCTCGAAAACCAAAATTGCTT
GTTCGATTGACCAAAAATAAAGTTCGAAATCGGATTAAAAAATCGGGTTT
ATTATCCAAAATAGGTTACATTTTGTTTGTGACGAGTTTCCCGATTTTAT
GTGGTCTTTTTTATTGTTTTATAACCAAATTTGTTTTAAAAAGAAAATAA
TTTTATGTTTAAATCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022108-exon-sc0000405-1575043694:20547..20788 | TCONS_00022108-exon-sc0000405-1575043694:20547..20788 | Clytia hemisphaerica | exon |
| TCONS_00022108-exon-sc0000405-1575043694:18570..20219 | TCONS_00022108-exon-sc0000405-1575043694:18570..20219 | Clytia hemisphaerica | exon |
| TCONS_00022108-exon-sc0000405-1510915933:20547..20788 | TCONS_00022108-exon-sc0000405-1510915933:20547..20788 | Clytia hemisphaerica | exon |
| TCONS_00022108-exon-sc0000405-1510915933:18570..20219 | TCONS_00022108-exon-sc0000405-1510915933:18570..20219 | Clytia hemisphaerica | exon |
| TCONS_00022108-exon-sc0000405-1491911889:20547..20788 | TCONS_00022108-exon-sc0000405-1491911889:20547..20788 | Clytia hemisphaerica | exon |
| TCONS_00022108-exon-sc0000405-1491911889:18570..20219 | TCONS_00022108-exon-sc0000405-1491911889:18570..20219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000405 | supercontig | sc0000405:18570..20788 - |
Blast
The following BLAST results are available for this feature:
|
