TCONS_00022144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022144
Unique NameTCONS_00022144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022144 ID=TCONS_00022144|Name=TCONS_00022144|organism=Clytia hemisphaerica|type=transcript|length=2492bp
ATGTGCAATCTGATACTTTAGCTCAAGGATTTGGTTCCTTGGGACTCATG
ACAAGTGTGTTGCTCCACCCTGATGGAAAGACAATCGAATCTGAAGCTGC
ACATGGAACAGTCACCCGCCATTACCGCGAGTACCAGAAGGGTAACCCAA
CCAGTACCAACCCCATTGCTAGCATCTATGCATGGACGCGCGGTCTCGTG
CAACGtgcaaaccttgatgaaaacgATGATTTGAATACTTTTGCTCTCGC
TCTCGAGAAAGCCTGCGTTGACTGCGTGGAAGCTGGACAAATGACCAAAG
ATTTGGCTGGATGTATCTATGGATTGAAAAACGTCAAACCAGAGCATTAT
CTACTCACAGACGAATACTTAGATGCTGTCCGACAAAAACTCATGGAAAT
CTGGACTCCACCACAAGCCTAAATCTCGGACACTCAAATTTTTGTAACGA
ACTAATTCTACATCGAATTTTTTACATTAcataaaaaacatgttttatat
acacattttttggaatttttactGGCAAAGAATGAATATTGTGTCGGTAG
CAGGATAGAAGTCTCCGTATGCCGCAAATGGTGACTGCTAGTCAGTGTCG
ATTGTCAACGGGAGGAGCTTTCATCGTAATCCTGGAATAAGCTGTTGACT
CTATAGCAATGTCATTTCAAGACGATATACTATCCACCCACAATGAGAAG
CGAAAAAAGCACGGTGCACCACCATTGAAATGGTCCGACACATTGGAAAG
GAAAGCTACAAAGTGGGCGCAACATTTGGCCAAAATTGATCAGTTGAAGC
ATGAACAAAATGTGGAGGAAGGAGAAAATATCGCCATGGCCGGAGGGAAA
GATTTGACTGGTGAAGGCGCGACAACCATGTGGTATGACGAAATTAAAGA
TTACAATTTCAATAAGCAAGGTGGATTCAACTCAAAAACAGGTCACTTCA
CTCAGATTGTCTGGGTTGCAAGTAAACAAATCGGAGCTGGAATTGCAAAA
TCCAAATCTGGACGTACCTATGTCGTCGCTAAATATCTACCAGCAGGGAA
TATGATGGGTAACTTTCCTGCCAATGTGAAACCATTAGgaagtgcacttt
ccaaagatCAAAACGCCAATGGCTCACCAATGACAATTGCAGATCCAAAA
CCAACTCAAAAGAAAAGAACTACAACAAGCACACCGAACCGGCAAACTAC
CACGCAAGGACGCCCTGCCATCCCGTTGCTGGCTATCATGTCTTTCATCG
CTGGTTTAGCATCGTTCGCTCTTTACTTAGCAGCTCTCGTTGGTACGCAC
TGGGAAAAGGGCGACGCATCAAACCATTTAGGTTTATGGAAATGGTGCGA
TATCAATGAATGTATCGCAATACAAGATGTACCACACGCATTACGAGCAA
CACAGAGTTTAAGTATCCTAGCAGCGGTTGCTGTATTCTTAGCTCTTGTA
CTAACTGTTGGGAAAATGGTTTCGCCGAAGATAAGATATTTAGTACCAGC
TTCTGTTTTCGTCATGGGAGGTTTATTTGGGATCGTATCAGCGGCTGTTT
ATACTGCAGAAGTTTCAGACTCTAGCCTGGATTATGGATGGTCATATGCA
CTAGCCTGGGTTGGAGTCAGTTTTGCAGTACTTGCAAGTATATTGATGAT
AGCTTCTCGATAACGCTTGGTAATCAagggcctatttgtttcatcGCTAT
TTTTACTGCATTTACTACAACTGcactcatttcaatttttttctgtccAA
AttttaagcactttttgtaaataaatttgCAAACTCCCTATCagtaaaaa
tagtaaaaacctCAACCTTCTGCAAGCAATTGCATCTGAAATCAGACTGG
ATGATGTTTTCTGGATGTTTTCTTAGCCAGATTGCCAATTTTAAGCCAAT
AAAGTTAGAGGTGAAGAGCTGAAACTGTAGCTTGCTCCACACACGGGTCT
ATATCTGAAATCAAAATAGCAGttattttcataatggcggaatAGTGGTC
ACACAGCCGTGAATAAACAATTGATTGAAAGTtactttttaagatttaaa
gcaCAACCAGGGATCATCAAGGCAGACAACAAAACTTACAATATTTgcta
tcattttcaaagttttcatggaATTTCAAGCACTTTTAGCAGATAGCATC
TACAGCATTTGTAGTAAGTGAAACAAATAGGCCCCAAATAAGACACCTGA
TCTCCCAAGAAGAAGAGCtcgaaaatatttcaatttcatgtTTCTCGGTC
GTTAACTACAACTACTTCATTTATGCTGTatagatttatttatttgtaac
aaaaaatatgaactcgaaaaaaaaatcaatttggtTTTTGTATCACAAAT
GGACGTCTACATTCGTTGCCCCAaactcgtacccagagccacttgtaCCA
CTTTTTAGTTTTACTGATGATGGACGTAATACAACCCTTTCGTGAGCGTA
AATGCTAGCTAGCCATGCCTGGGGGTACTAGCTTTGCGAGAT
Run BLAST on NCBI

transcript from alignment at sc0000406:17045..32563+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022144 ID=TCONS_00022144|Name=TCONS_00022144|organism=Clytia hemisphaerica|type=transcript|length=15519bp|location=Sequence derived from alignment at sc0000406:17045..32563+ (Clytia hemisphaerica)
ATGTGCAATCTGATACTTTAGCTCAAGGTTAGTTAAATTCACAGTCATCT
ATATTTAagaaacatgttggaaatttgaagcaaaataatacGCCATCTTT
AATGAAGTGAAGCCATAATTCAGCTAGCACGAGCCTTGACATTTGTCATT
ACAGTGTCCAACTGCCTGCCATTTTGTATTATACCAgggtttttctaatt
ttcttgaACACTATCTCAGGTCAAGAATAATGATCTTAGAGCATAATTGG
ATCTTAATGGTACGGCTCAAAACTTAAACAAACACATGATTTGCTGAGAT
AATATTCAACAATCTGATTCTTTTGCGCCGTATAATTGGCGCTTATTGTT
TGCGATTCTACATCTAAGAGACTTAGAACTCGAAACTTCCCATGATTCAA
TCGTATTCAACTCTTTTTGCAGGATTTGGTTCCTTGGGACTCATGACAAG
TGTGTTGCTCCACCCTGATGGAAAGACAATCGAATCTGAAGCTGCACATG
GAACAGTCACCCGCCATTACCGCGAGTACCAGAAGGGTAACCCAACCAGT
ACCAACCCCATTGCTAGCATCTATGCATGGACGCGCGGTCTCGTGCAACG
tgcaaaccttgatgaaaacgATGATTTGAATACGTAAGAATAATTCGTTT
CGTTTTTGGTTTACTTTTGCCAGTGTTAGAAGTATTTCCGTCTCATACAG
ATTtcagtctcagtgaaaaatatAAAGAGGCTTGTCTGTCTTAAAATTCT
GCTTAaggtaccaaaatttcaagaatatattctttgccacggaaagtcac
gtgacatctttttcaaccaataagatttactaatttcgagggtaaaacaa
GCACTATATGGTTTAAAtcactaaaagattatgtttactgaaaacacata
attaatctttagtaagtgttctgttgtaccccagttctgacgtcatgccg
tggcGAAGAATGCTTATTTGGAGTATTGTAAAATCCAATCTCTTTTTTCA
CTATTATGTCAGCTTCAGATCTTGGCCAGATAATCAAGCTTCTAAGGCTT
AATCTATTTGTATAGAACCCCTAAAGAAAGGTTTTTGTAGTATTTTATTA
TATAGGGTTTTATCTTACATAAAACAATTCCCTTGCAAGTTCATCGAATA
TGACTTATAAGGGATAGCACTATTCGTTCAAGATTTCCCAGTAGCATGTA
CTACTGCAGTAGTTTAATTTGATGAATAATACATTATGGATTACCCTTTT
TCAGTTTTGCTCTCGCTCTCGAGAAAGCCTGCGTTGACTGCGTGGAAGCT
GGACAAATGACCAAAGATTTGGCTGGATGTATCTATGGATTGAAAAAGTA
AGTTTGATTTCTTTGCTCCTTGTGATGtgtctttaaactttttttagttt
ttgagctCCGTCATATAACAAGTTATTTTCAGGTGAAGGTAAGATATGCA
ATGTCTGCCGGTAGGACGGGATCAGGCCTGGTCACCAGACCAAAGTAATA
AGTACGAAGAAATCTGTGTTTCGCTTAATATGAAGAGCTGATAGAATAAC
CATCGTAGAATTTCCACCGGTTgtgatcactgacctttataattATATCC
CTGGATATATACCCCAAATTTGATCGAAAcctttttgaattggtacccgt
aaaaaagccattgcagtgttaaaaattagggaaagtagatctagcgctct
cgatgcatttacaccgctattgagtagtgtcGCCATTacggtaccacttt
tcaaaaaatttgagaaacttggtccagggtatataaaggtcagtgttgtG
ATATACTTTTTCAACTAATTCTCTTTCTAGCGTCAAACCAGAGCATTATC
TACTCACAGACGAATACTTAGATGCTGTCCGACAAAAACTCATGGAAATC
TGGACTCCACCACAAGCCTAAATCTCGGACACTCAAATTTTTGTAACGAA
CTAATTCTACATCGAATTTTTTACATTAcataaaaaacatgttttatata
cacattttttggaatttttactGGCAAAGAATGAATATTGTGTCGGTAGC
AGGGTAGGTATACTATTTAGTTTTTTAAGGATTCATTATTGTTTagggat
ttttttgaaattttttgttctTTCTTGTGGCTAACCCATATCTTGTAAAT
AGTTTCGTCAATCATTAACTTTCTTTAATACTTTTTGTTCGGTTTTTGTC
CCCTCACCCAAGAAGTTTTAGCTCACTTTAAAACGcgttttatttaattt
gtaGCAATTTTGTAGTAACCTTTTTTGTATTTAGTAGTCCTGAAAGACAA
TTATATACATCCAATATTCAAATAAATCGAAAGCTGCGATTACTTTTGAA
AACTCCTTGATACTTTTCTTGACATCGTTTTTATACCTTTCACTTAGGGC
TTGTCAGATATATGCGACCCCAGGAAAACCCCAGATATCTATATATCGTA
GTTTCGCTCATTTTCTCCTTATTGATGCATAATTTgtaaattctttcaaa
aatttatatctCATTTTGCGCCGCAAACACTTAACTAAGGtgtttgaatt
tttatgaattGCTTATCTCTGATGCATATACAGATACAAACATCATTCAC
TACCTTCTTCTTTGTGTTTATTACATaaaattgttttgatattttgactC
TAGGAATTCTAATTATAAGAAATACCTCCTGTAAGATATGCTGTTAATCT
CCCCTAGTGAATTAAGTGAGTTTATTTGTTCATCTATTAGATACATTTTA
CTATGAAAATAATAACGCCGTTTTATCAGAATGGTAACTGTTCTCTTATC
TTCTTTTCTATACATATGACGTTCTGCTTCCCACATTGTTAACGTCACGT
TTTAAATTGCCAATCATTTTAATACTTTCCAGATAGAAGTCTCCGTATGC
CGCAAATGGTGACTGCTAGTCAGTGTCGATTGTCAACGGGAGGAGCTTTC
ATCGTAATCCTGGAATAAGGTAAGTGcttcttttttgttgttcttttcTG
TTTCCCACAATAGTTCCCTTTTATAATATCAGGTAAGAAGCAATAACGAG
CGTCTAGCTTGCTGCTGGCTATCAGAACAGTACTCTGgttcaccaacact
ccatcgcagcggtctttttgaaaaaactcaaatgagaaaagacagtggca
acagaccctctacggcaatgaattttaaaattagccgtagatactgggtc
tgtttACAGACAATCAGAACAGTGGATctcttttgatttgttttttacaT
ACAGTCAACtcactctaattcgaacctctattattcgaatctttctgtag
ttCGAACTTAAATATTAGGAAATCGTATAAAGTCGTTTCcacaattcgaa
tctttctctaattcgaagaaaattcttggccCAAAATCGAATTAAGGTGA
GGGAGAATTCAACTCTTTTTGCAAACCGGTTCATTAATGTAGAACTTTCT
AATGTGTTTCTTTTGTCACCATTCAAGAGTCTCGTCATAGTGCACAAATC
GAAAACTTGAAACAATTgatttttgatcaaatttgaTGATAGATTGACTG
GTTTGAAAGCTTATAATCGGTTTAAATATGATGAATATTGTCATGACTAG
CAAGTGATGTATTACTGCTTgattttcattagtttttctatAGAAAGCAT
TTTACAAGGTTAGTTACCATCGAACTTTTTATGGTGTTTGTAGAGGACAC
TCAAAATCAATGGACGGGAGAGAGTTTCTATTGTTGTTATCCCTTATATG
GAAGGGTTTTATCtccgtcatcaaaattttgagtaCCCTTTGTAACCAGC
TTTGTGCGAAACCGTCGTttttatttgaagatattttattcAACCTAATC
ATGATGCCATCCTTGGTGTTTTTTTGGGTGACTTTTTCCCAAAGAAAGGT
CTCCTCTgatatactttttttaaaagattaaacCATGAACATGACTGGAC
ATCTACTTTGTATATTTGTAGAAAGCACTgttagcttcgttgccgcctcg
ttaaaaacataaaataaaacaataaattttgatatgcCTCTttggaatac
cttgctaacaacgtcaaaacttcaaCTAAAGccttcagtaagtcaatatt
gtccgtgaatttttttgcgcaatgcatcatgggtaatcattcggggagaa
ttcggaaagccgatatcgtctattatgaTATTCTCATGACACGGGCCATC
AACTTTGGCatactattttttcaaaaattattcgtggagtatacacgcag
ttgaaattttgcatttcagtgttgaaaaatgttgatgaaaTACATTGCAA
ACCTATGAAAAATTTTAGACTAATTCTTTTCTGAATTACGAGTAATGTTA
AAGCTCTGTCAATCCTTTTAGCTAAGTAATTCAAAGAATTAaaattgtga
cggaatattgtcggattttttataccaaatttgaaatacaggcggcaacg
aagctcacTTCAAAGACACAATAGAAGATATGACGTCCAgttgtttatat
gttcatgaacaaactcaaaaaaaaaactcaaaaacaggaaaatggacaaa
aatattaacaaaacgGCGAAAATatctctttttattttataagaacaaga
ctCAAATTCGCCTGGAATTACTCAGTTTCAAGCAAATTAGGGGGTCAAAG
TTGTAAAAATGGGTAAAGagcaaaaatttactgcttcttataaaaaagaa
tgttCTTTTTCTTGAGGTGTGCATTTCAGTACAATCAATGACATAATAAA
AATCTCAGCAGTCCCGACAGATTCAACTccttttttctttatacctccat
gatttCATTACAATTAATGACGCGACTTTGGTATTGTATAGAGTAATCAC
AGCCTTGATGAATACTTGATAAAAGGTTAATTAGCGAGTCATTCTAAACC
TAATCTTATCCTTTTTGATGCAGGTTTTTTTATCAGCAAAGATCATTTTC
ATTTCTCTCTTATCTCATCAGCTCTGTTAAAACTACAAGTACAAGTAAGT
GGTtggtatattttcaattaaatttcttcttttgatagCTTATGTCTTGC
TTTATTTTTTCTCTTGGTGCAATTAGTTCAAATTGACATCAACATATTTC
AAATTTGGTAGTAGCATCTTCATTCCATTTCGCAAATAATATATGAATAA
AAATTAGGAGATAAGAAGTTCTGAAACAAACAATTGTTttacgccccccc
ccccagcggtttgcgtgaatgcgtgaatgggcttttttacTTGCNagaga
tgacgcgttctttagaaaaagcaataaaatcctttgtctcaagATTCAAC
AATCAACCGAATCAtcgaaaaccttgtaaaaactccagcttgacccgaAT
GGGTggatgggctttttcacttgcgtgaatgcgtgtaaataaaaataaaa
ttgcgtgaatgcgtgaattggaaagccttgcgtgaacaaaaattgcgtga
attgcgaaaaaacattgcgtgaatgcgtgaatttgggaaaaaaatttgcg
tgattgcgtcAATTGAAAGTCCGCCGGAGGGGGGCCTCTTTTACCAAAGG
ATTTGAGGTCTTTACACCAAATACATCAAGCAACTATTGCAGCATAATGG
ATTTGGTTGGTGATACCTAGGGCAATTAAGTTATATTTCTGAAGCTATTG
CGCTGGTCGATTgtattttgacgtcatttaacTCATGTAAACTTGAGCAC
ACTGACCTTTATGTACCCTGGacaaagtttctcaatcccggtcaagcaaa
atctttgatcggagtttgttttttgaaagtgCACTTCTCAATACAGAAGA
AACCGGCGcttttctcttgattatacccctgtctccttaaaagatgtgtt
ctgaaactttctagggttacctagacaacaaacACACGTTTgatcttgat
tatacccctatctcgtcagaacacatcattatttctagctaACTAATTTA
CACAGAtcttatcagaacagatcaaaatttctagctacTGAAACATACTC
CTAGGACACATCGGTAAAAGGGTCGTCTCTCCGGCTGCTTTTGTCAATAG
CGTTGTAAATGTaccgagagcgctagatctactttccttGAATTTATAGT
TTTGAAGATGCAGCGCCGttaaactttaatttttaacactgcaatggctt
ctttgcgggtaccactgAAAATAACTCTGAGCAAAGATTGTGGATATGGT
TTGGTCCAaaataaaggtcagtgcttgAATCTCATCCTCATGCATGTAGT
GTTAGGATTAATTTCTGTATTCGTAGACATCATGTTATGGAAATTCACtt
tgctgttaaagcgattcaTTTTTGTACACCATTTTAGCTGTTGACTCTAT
AGCAATGTCATTTCAAGACGATATACTATCCACCCACAATGAGAAGCGAA
AAAAGCACGGTGCACCACCATTGAAATGGTCCGACACATTGGAAAGGAAA
GCTACAAAGTGGGCGCAACATTTGGCCAAAATTGATCAGTTGAAGCATGA
ACAAAATGTGGAGGAAGGAGAAAATATCGCCATGGCCGGAGGTAATGCCT
TTCAAAATCtcgtttttttttgcactttttcaTCATAAAGCAAATTGTAA
CTTGGAAGAatatttgagttttcaaaagtttttttcttcttttagtgCTT
TTGCATCAAGAAGTCagtattaaaatttttgataaccAAGGCTCGTAAAA
TGGCTATTTTACACGAGTTTTAGCGGCCGTAGTGCAAAGATAAGAGACCT
TTAGCATCTAGAACGGCGACTTGAACTAGGACGTGAGgtaaatcttaaaa
tcaaatgGCGAATCTTTTATCTAGATTtaatcatggaggtataaagaaag
acaggagaagtatgctattgtaaccaagctcgccctacgattaaaaaagt
tacgatgtatgcatgctcataatctcatataNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatttcatcgggcgag
cttagaatttcttttgatacattttataaaagaaatcaaaagaccaatta
ccgacacattcaactcctgttttctttatacctctatgatttAATATGAC
ATGGACAAATTTGAAATGTAGTCAAGTTTTTGTGATAAATGACGTTATAA
TTTTCGAGGGATTCATGTCATTTAAAACTATTGTACTCTTCCTTTATCGT
TATCGTCCAAAATACGaggtcaaaaaagaattttcaatttgCTTTGAGAT
TTGAAAACGTCGACTAATTACCCTATTATAAGTCACTATTCTCATGAGAG
ATTGATGTGAAAAGAATAGAATCTATAGTTGCAATCCAGATATCAATCCA
TAAGGGCTTTCTATTTTGTTCAATTCTGCCTTACATTTTCAAAGTTGCCG
TCCTAGATGCTAAAGGTTCTTATAGAGCATTCGGCTACGGTGCACAATGT
CGTGGCTTCTATCCCTGGCCAAGTCATAACAAAGATTCTAAGATAGCCTC
CAAAATGCCTCACTGCTTcaatgctcagcaattaagagaatgaTCGATAG
TTAGTGAAGCAATCTGAGGAAAAAGATTGGCGTCCGCCCCCACCCTCTGG
TAGATGGTAGATAGCTCTCGAAAGGGGAGCCTTCGGCTGCGGTGGCAAAC
TTTAGTACTCGATCTTATGGTTAACAAGCATCCTTTTACGTGTCATTTAC
AGGGAAAGATTTGACTGGTGAAGGCGCGACAACCATGTGGTATGACGAAA
TTAAAGATTACAATTTCAATAAGCAAGGTGGATTCAACTCAAAAACAGGT
CACTTCACTCAGGTTTGAATACTACTATCGTTAAATCTTCATTATTACTG
CATACAATCTTGTTATCAAAACTCTCTCATTAAAAACTCTCCTATCATTT
ACAATATGCCccgaaaaaaagtgtacaaatttTTCTATGGAGTAATCATC
AATTctttcaatcaatagatattcaattcccaagatgattAAAAAGGTTT
TTGAGAATGAAATATTAAGTATAAGAGTCATAAAAGTTGGCATAGattat
gaggattttacttgATATAAACATCTGTCCGCTTTTTTGGAACACACTGT
ACATACACAGTTTTAAACAAAGgaaaaacaactttttaaaaatttatttg
tttaatTATTCCGGAAAAATCTTCTTTAGATTGTCTGGGTTGCAAGTAAA
CAAATCGGAGCTGGAATTGCAAAATCCAAATCTGGACGTACCTATGTCGT
CGCTAAATATCTACCAGCAGGTAATATCATAACTCCTCTGTTTAAGTGAC
GTAATGCTTAAATTCCTTATGCTGAAATCTTTCAAGAAAATTCACATCTT
TAGTCGAATAACTGAAATTTTGTAGCTATTTACTTACTCTCCAGGTACAC
GCCACACGCCACATGCCATATGCTAGTTAAGATATTCAGAGTGTTACTGT
TGTTATTGTTGTACTCTCTTATTCATTAAACCTGCTTAATACAGTAGCAT
GTATTGAAGTTGTCTGTACAAAGACAACTCGGTATCTACGACTAATTTCC
AAATTAAATATCGTAGAGGGtatgttgtcattgtcttttctggttTGAGA
TTTCTCAAACCGACCGCAGcaatggagtgttggtgagagaggagAGACGA
TGGCagaagtaagtaagtaagtaatagtttatttcatgttgacgaaaagg
tagcaacaaaggctaataaaagtcaacgctactttacaattaaaaaaaac
taatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAACTAATGTTTTGTTGGCAGCTCATCGTCGCTGCTACTGA
GGctagatattgacagcttttggttggcaaagtttttgtttgtttttatc
aagcgAAGGTTATCTGTCTGGGACTTCCTCTCACACGCCAAATGAAATCA
CCATTACATTCGGAGTTCCATTTCTTAGCTTTTTCGCAcatctctttgat
ttttcttctttcattgatgGTGAAATCATCAGTGATGCTTAGATGATTTC
CAAGCCACTTCAacttttttaaggctttaaggttgctcatgattctttct
ttttcttcttcactttgcaAGGTCACCTTTATCGGACGATTTTTCCTCGG
CCCATTTTCATGTTCGAACCCAATACGATGTTGATGCGTTGGTTTGATGT
CGCGGATGTCGCGGATGCCGATATCTTTGAGCAGATcctcaatttccttt
ttgttCTTGATCTTCTTCTTTCGTTTCTTCAACTTGTTTAGGGAGTCCat
gaattatgtttttttttcttgatttgatgTCTCGTTTTCTCTCCTCtcct
cttctttttgttccgcgacaacagatttaagattttccttGTGTGCTTTG
GCTATATCAGCGTAGGTTTTACGGGATGACtctttcataaaatcttttgt
ctgttgtatctcttcttttatcattttccttgttttggcTTCTAAGTCGG
TCATCTTTAGTGTTAGGATTGTTTCgatatggcgcgccaaagcggaaata
aatactatctctcaTTTCGCGAcaatatctttcatttcgcgacactatct
ttcatttcgcgacactatcttttatttcgcgacactatctttcatttcgc
gacactatctttattAAAACGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNccgcgaaatgaaagatagtgcc
gcgaaatgaaagatagtgccgcgaaatgaaagatagtgtcgcgaaatgga
AGATAGTGTCGcaaaatgaaagatagtatttatttccgctttggcgcgcc
atagttTCGATGTCGTTGTTGATGACTTTGCGGTTTTTGGTCAgttcttt
tttgagttttttgatttcGTTGTCTTTCTTAGCAATCTGTTCTTGCATCA
TATGGTACTTGTTTTCTCCGATTTTACTTCTTAAGGATCTCGTTATTCGC
ACACAATTGTGACATACGTATTGATTATTATAAGTGTTAGCGAAGATTTA
CAGTTGGTAAAGTGGCAATTGTGTGCACTCGTAATTTACCATACGTTGAC
AGCTACGGCATTTGAGTCGATTTTGATCTTCATCATCATCTCGTAGCCAG
AGTCACTGGCAtaatctttttgattttactgatggactcAAAAATATCGA
GATTTGTAAAATGAACTTTGGCTGGATACCAACAGAGTGATCAAAAAATC
GCGTGCTGGGATGGAGATAGGCTACATCAATACACGTAACAAGGGTGCAT
GTTGCAGTTGTGTTTGCTGCTTCAATCGGTGGGTCTTGGGTGTTTTTGTC
GCGATTTTTATCATATTTAGCGaatttcgatgattttttgagtttccacc
atttttttgaaagcgATGCAGAACACGTCTTAActaagtgacgtcaaaaa
gaagTGCTGCTAtctataaatcatacttcatggCAGAGGTCTCCATACgg
caaattttttatcaaacagacaattgCGTACAGAGTAGTATTCAAGAGGC
CTCTTTGCTAAAAATTCGGCCTTAAAATCATGGATGAGTTTATTCTTCAT
TCAATATTCCAGTAAGCACTCACTTAACTAATATAGAGAACTTTTCCCTA
GGGAATATGATGGGTAACTTTCCTGCCAATGTGAAACCATTAGgaagtgc
actttccaaagatCAAAACGCCAATGGCTCACCAATGACAATTGCAGATC
CAAAACCAACTCAAAAGAAAAGAACTACAACAAGCACACCGAACCGGCAA
ACTACCACGCAAGGTACCGTTACatttttaccttattacacaaatataac
taaagtcattttattaacacgaattgaaaaatttcaaccccccccctctt
aattaaaaccagccggtgtttccttgaaaaagcagaaaaattcgtgttaa
tttcagatATCGTCCAAATTTCAAGGCTGTTGAATACTTggctagtaata
ttcgtgtaataaggtataccGAGTTTTACCTTATAGAGAGATGAGTGCTC
CGAGCCACGTTAATGATAAAAGTTttattaatcgtggacattttGCCTGT
GTTTTCAAATATCTTGATCTTAAACGTCACTTTtcgaaaacattcgaaaa
tctttttttgttcaaatttctcACTTCAATGCAGCGATgcagcaattttt
tttcggacacttcggtgtgtttttcggacaaatatgacggtctcaggcca
AAATCTtagggtcaaaatttaatgaaaattttagcttgacaAAAGagctg
ttgtatatttttggaaagctctcaaaaaattaagagtagagatatattgc
aagaaTAGGTGATTtttgtacctaactcgagatattttacttcaaaaagt
gcaaaaagtggagcaaatagctgtttctggctgaaaaacactatttttaa
gGCTCAATATCTTGAATTACCCGAAAAATTCAAGGCTCTGTTATAAAAAA
CGAAGGATATCTCAGATTGTTTGCTGATTccgacaaaaataaacaatgtc
cacttaagggaacttattgcGGCgagtttttacaaaattctCCAAACTTT
ATCTTCGCATTACAAAATTGCTGCCTTGTTAAAATTAAAGATTGACGTTT
ACTTGCCAAAGAAAgttcttttcaaaatcaaattgtTTTACGATTTGTGC
TCCTTGCATGAATTAGTTCTCACCAAAAAGGTTTGCGCAGCGCAATGGGC
CTTTAAAACACAACTGGtcgaaaaaatttgacttttgcgCCTATGGGCGC
AATTATCAATCAACGAttccaggctaaaatcgaactacctgactttctat
tgtgcgcatgtgtaagaaaaaaccacatataattaatacctcttatggtc
aaatctttctttcttcattagtagaaaaaagtttaaagtaaTTATAAACC
TTTATTGCTCGCCCGACTCGAGTCAATACATTGAATTTGCTTTTGTGGTA
TGGCGATTCTGCAGCGGAAAAATATGCTGACAGTGCCAACACTGCTGTGC
CTTTACGCGGAGGGTCGGATAACGCCGCTTCTGTCTTTGTATAACCTTGA
CTTgatcaaaaaaataacaattatcTTTCTTTCAGGACGCCCTGCCATCC
CGTTGCTGGCTATCATGTCTTTCATCGCTGGTTTAGCATCGTTCGCTCTT
TACTTAGCAGCTCTCGTTGGTACGCACTGGGAAAAGGGCGACGCATCAAA
CCATTTAGGTTTATGGAAATGGTGCGATATCAATGAATGTATCGCAATAC
AAGATGTACCACACGCATTACGAGCAACACAGAGTTTAAGTATCCTAGCA
GCGGTTGCTGTATTCTTAGCTCTTGTACTAACTGTTGGGAAAATGGTTTC
GCCGAAGATAAGATATTTAGTACCAGCTTCTGTTTTCGTCATGGGAGGTT
TATTTGGGATCGTATCAGCGGCTGTTTATACTGCAGAAGTTTCAGACTCT
AGCCTGGATTATGGATGGTCATATGCACTAGCCTGGGTTGGAGTCAGTTT
TGCAGTACTTGCAAGTATATTGATGATAGCTTCTCGATAACGCTTGGTAA
TCAagggcctatttgtttcatcGCTATTTTTACTGCATTTACTACAACTG
cactcatttcaatttttttctgtccAAAttttaagcactttttgtaaata
aatttgCAAACTCCCTATCagtaaaaatagtaaaaacctCAACCTTCTGC
AAGCAATTGCATCTGAAATCAGACTGGATGATGTTTTCTGGATGTTTTCT
TAGCCAGATTGCCAATTTTAAGCCAATAAAGTTAGAGGTGAAGAGCTGAA
ACTGTAGCTTGCTCCACACACGGGTCTATATCTGAAATCAAAATAGCAGt
tattttcataatggcggaatAGTGGTCACACAGCCGTGAATAAACAATTG
ATTGAAAGTtactttttaagatttaaagcaCAACCAGGGATCATCAAGGC
AGACAACAAAACTTACAATATTTgctatcattttcaaagttttcatggaA
TTTCAAGCACTTTTAGCAGATAGCATCTACAGCATTTGTAGTAAGTGAAA
CAAATAGGCCCCAAATAAGACACCTGATCTCCCAAGAAGAAGAGCtcgaa
aatatttcaatttcatgtTTCTCGGTCGTTAACTACAACTACTTCATTTA
TGCTGTatagatttatttatttgtaacaaaaaatatgaactcgaaaaaaa
aatcaatttggtTTTTGTATCACAAATGGACGTCTACATTCGTTGCCCCA
aactcgtacccagagccacttgtaCCACTTTTTAGTTTTACTGATGATGG
ACGTAATACAACCCTTTCGTGAGCGTAAATGCTAGCTAGCCATGCCTGGG
GGTACTAGCTTTGCGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012421XLOC_012421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022144-exon-sc0000406-1491911889:17045..17071TCONS_00022144-exon-sc0000406-1491911889:17045..17071Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:17045..17071TCONS_00022144-exon-sc0000406-1510915933:17045..17071Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:17045..17071TCONS_00022144-exon-sc0000406-1575043694:17045..17071Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:17467..17677TCONS_00022144-exon-sc0000406-1491911889:17467..17677Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:17467..17677TCONS_00022144-exon-sc0000406-1510915933:17467..17677Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:17467..17677TCONS_00022144-exon-sc0000406-1575043694:17467..17677Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:18299..18391TCONS_00022144-exon-sc0000406-1491911889:18299..18391Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:18299..18391TCONS_00022144-exon-sc0000406-1510915933:18299..18391Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:18299..18391TCONS_00022144-exon-sc0000406-1575043694:18299..18391Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:18875..19097TCONS_00022144-exon-sc0000406-1491911889:18875..19097Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:18875..19097TCONS_00022144-exon-sc0000406-1510915933:18875..19097Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:18875..19097TCONS_00022144-exon-sc0000406-1575043694:18875..19097Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:19927..20013TCONS_00022144-exon-sc0000406-1491911889:19927..20013Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:19927..20013TCONS_00022144-exon-sc0000406-1510915933:19927..20013Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:19927..20013TCONS_00022144-exon-sc0000406-1575043694:19927..20013Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:23382..23585TCONS_00022144-exon-sc0000406-1491911889:23382..23585Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:23382..23585TCONS_00022144-exon-sc0000406-1510915933:23382..23585Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:23382..23585TCONS_00022144-exon-sc0000406-1575043694:23382..23585Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:25747..25856TCONS_00022144-exon-sc0000406-1491911889:25747..25856Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:25747..25856TCONS_00022144-exon-sc0000406-1510915933:25747..25856Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:25747..25856TCONS_00022144-exon-sc0000406-1575043694:25747..25856Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:26224..26314TCONS_00022144-exon-sc0000406-1491911889:26224..26314Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:26224..26314TCONS_00022144-exon-sc0000406-1510915933:26224..26314Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:26224..26314TCONS_00022144-exon-sc0000406-1575043694:26224..26314Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:29796..29957TCONS_00022144-exon-sc0000406-1491911889:29796..29957Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:29796..29957TCONS_00022144-exon-sc0000406-1510915933:29796..29957Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:29796..29957TCONS_00022144-exon-sc0000406-1575043694:29796..29957Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1491911889:31280..32563TCONS_00022144-exon-sc0000406-1491911889:31280..32563Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1510915933:31280..32563TCONS_00022144-exon-sc0000406-1510915933:31280..32563Clytia hemisphaericaexon
TCONS_00022144-exon-sc0000406-1575043694:31280..32563TCONS_00022144-exon-sc0000406-1575043694:31280..32563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:17045..32563 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.66508e-07	0.217264	0.11793	3.99761e-05	0	0	0.26984	0.244709	0.34428	0.000275068	0	0	1.18153	0.010726	4.69619e-06	0.0339681	2.36675e-05	0	3.52325e-05	1.44016	0	0	3.33161	1.67986e-05	6.2559	7.4632	1.04114	0	1.95194e-05	6.6992e-05
Blast
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BLAST of TCONS_00022144 vs. Swiss-Prot (Human)
Match: IDHP (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 8.081e-54
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 3 
Query:    3 VQSDTLAQGFGSLGLMTSVLLHPDGKTIESEAAHGTVTRHYREYQKGNPTSTNPIASIYAWTRGLVQRANLDENDDLNTFALALEKACVDCVEAGQMTKDLAGCIYGLKNVK-PEHYLLTDEYLDAVRQKL 392
            VQSD LAQGFGSLGLMTSVL+ PDGKTIE+EAAHGTVTRHYRE+QKG PTSTNPIASI+AWTRGL  R  LD N DL  FA  LEK CV+ VE+G MTKDLAGCI+GL NVK  EH+L T ++LD ++  L
Sbjct:  315 VQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445
The following BLAST results are available for this feature:
BLAST of TCONS_00022144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDHP8.081e-5472.52Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
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