TCONS_00022150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022150
Unique NameTCONS_00022150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022150 ID=TCONS_00022150|Name=TCONS_00022150|organism=Clytia hemisphaerica|type=transcript|length=1108bp
CAAGTCAATAACAGATTTAGGAAAGATGACTTTCTTACGAAGAATATCTC
TTTTGCTTCTGCTGTTCGGTGGTTTTCTTCTTAATGCCGATGCTGATGTA
GACGTGGATAGAATACGGAACACGTTATCGAGAGTTTTACAAGATCCAAG
TATTCCCCCTAATATTGCAAgGTACATTGCAATGTTGCATGATggtattg
attttttgaaatgcttGCCAATCTACAAAAAAAGTAGCAGATGTTATATC
TCCAAAGTTTGCAAAACACCAAAGCTGAATGTCAAGGGAGTGCTGGTTCC
ATTCCAAACTGAGATCTGTAAAAGACCATACAAGATTGTGATTCATCTCC
AGTCCTTTAAAACACCTTGGGAAGGTGAGGTTCTTGATCAATGGGAAAAT
AAGATATGACTGCACGAAACCACGTGGTCCTTACAACTGGTTTCAAAGAg
GTCAATTGAGTGAACAGGCCCCTCGTGGTCAATATAACCGAATTTGGTAC
AAACTTCTTGTTCGATTTGAACTCAAAACTAAAGCACACAAACACTGGTG
GAAATTCTCTTACAAATGTGCCAAAAACGGGTGTAAAGATTTGGTGAAGA
AGAGCGGCACTTTGGGTGGCCATGCGGTTGCGGGTCCACAGTCATGTAAG
AATGATGTTCTGAAATACCGGAATTACTTGTTGGAAAATCAGAGAAGGCG
TTGTCCGGGATGTGTGGAGCCATGATATACTTATGAGACGCTCAGTTTAG
TGACTAAAATGGTAAACGGTTGGTTTTATTAGAAGACCCAGTAAAATTTT
GCCGAACCTGAggattttcttaaatttctattgttccaaacaatAGAACT
TTTGTTCTGGAGGCCTAAATCTGAGGctagtgttcttataaaattgttct
tacaaaTAAAATAGCGCGTAGTTGAAAATCTGTATTTTTTGAATTCTTAC
AATATCTTTTTGGCGAGGGAGTAACAATTTTGTGGGGTATTTTATTATTG
TTTAGAGCGGTATATTATagtaaattaaattttgatatgATAGGTAGTTC
TGATTACTGAATGAAATATATCCGAGGAGAAAACAATGATCCAAAACAAT
TGTCCATT
Run BLAST on NCBI

transcript from alignment at sc0000406:39947..46601+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022150 ID=TCONS_00022150|Name=TCONS_00022150|organism=Clytia hemisphaerica|type=transcript|length=6655bp|location=Sequence derived from alignment at sc0000406:39947..46601+ (Clytia hemisphaerica)
CAAGTCAATAACAGATTTAGGAAAGATGACTTTCTTACGAAGAATATCTC
TTTTGCTTCTGCTGTTCGGTGGTTTTCTTCTTAATGCCGATGCTGATGTA
GACGTGGATAGAATACGGAACACGTTATCGAGAGTTTTACAAGATCCAAG
TATTCCCCCTAATATTGCAAggtaaaagaaattatttttgattctCCACT
AATAGAGCTTCTATTATACcccttacatccctgtctcaaaaaTTCGGCGT
GATTTTTACACtcaattgaaatgaaattttaaaatcaaaatctcaATCTG
AAATATAATAAAATGTATTTACTTCAACTCAAAAAGTGGGAGCGATTCCC
ATTCAACGGGAATGGTtgtcactgggcgaaataagagatttccaatcctg
ggAATATCTTgaaactttggaaatatagaaaagtcattttttcatattta
caaCTGTATATGGAAATATAATATTTCATGGTATTTCCAggattgaaaca
tcatattttcaaaatatttccaaattttggaaatatgatttttcaatatg
aatttcagattttgaaatctcttatttcgcccagtggtGTTATAGTAATT
TCCAATTGGTATCTTTCCCACTGGGAAGTTTGAActttgattttcatcaa
tttaCTGTAATTGTAGCTTTCGAAAATCGATTTGAATTACTTCCTCGATA
TAATTCAAGGAGTATAAATAGAGGCAAGACTTCACAGAGTTCATTTTTTA
TTGGGAATAATTTCTGGTACCCTTTAGTCCTAGATAGGAAGAAAGTACAA
TGAGAAAAAGCTAAATAAATATGAGCTTGCTTCCTAAGCAAGCTTATTGT
AGAGGGTTTTTATCTTCTCCTCGTAGAGTGCTTcctataataaagagttg
acacacTATCtatgtttcaaactcagagttccATGGTGCTCAGGCACCAA
TCATCAGTGATTTTCAGCTGCTCCGAGTTTGAAACAtagatattgtgtca
actctttattataggAAGCACTCTACGAGGAGAAGATAAAAACCCTCTAC
AATAAGCTTGCTTCCTATTTTTGTTTCAACGACAATATAGGTACATTGCA
ATGTTGCATGATggtattgattttttgaaatgcttGCCAATCTACAAAAA
AAGTAGCAGATGTTATATCTCCAAAGTTTGCAAAACACCAAAGCTGAATG
TCAAGGGAGTGCTGGTTCCATTCCAAACTGAGGTTTGAATTTTGTTATTC
AAAATTGTTCCCTGTCTTTAAATAAAAGCGACGCTTGCTTAAACTTGTAg
gtaatgacaaaaaataacacaaaggatttattatacactggatatacaag
taacagacttttgccgatttctcgtgtactagctatgtccgcagtaaaga
tattattgttcactctccttccctcattaaatgatttttcgaagcatttt
tattgcatttcttatcgaaaatcactcatccaattcccaaaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccc
ggtggaaaaataggccaaaaaattgTCCCCGGtaaaaaaataccctacat
tttcaaccccactgggaaattgccctatgattctatccccattgaaaatt
gaatagaaaaaattggactccaaaaccatccccactggaatttttgagct
ggaaacaaaagattttctattcccattgggatttcgatagaaattttcat
cccaaaattttcaaacttcaacctcaaaaaaaccaccttgccatccacca
cgtgcctccaaaggattttcataccacagtggagccaagacactcaaatc
ttatgtatgttaatctcagctcttctagggacagtcttggaaagatattc
ccaattgaaaatttcgtgtcactataagcattttgtctgaatttcttgtc
caatgatgtttttctcacattagatttcacaaatgtatccagcttggaat
gctagccttacttgCTAGCcttacaaactttttttctgcaaatgtacaaa
aagaaagagcaaGAGAACTTCTTTAAAATAAGACTGAtgataaagatttt
taaaaatcagacatcttcgagccgccatgacagttgtcctttgcgggcaa
agctagaacatcaattgttttctgaaacaatggaaatacaatgatcgctc
tccatcgttttatgagtcatttatccagtgtataataaatctttgatgAC
ACGCAAAAAGCTAACAGTTAGGTTTATAATCAGTCTCATACTTTGAGCCA
CTTGCACCAATTTTTCATTATACTGGATGTGACACGATGTTTTGTAAGCA
CTATTTTGATCATAAAAAGCTAAGCGACAGGAAATGAGTTTGATTTTTAA
TCTAAGCTTTCGATGTATCTCAGACGTCGTCTATTTATATAGCGGATATT
TGTATGGAGCTGCTTTACCCATAGTCATGGGGTAAAGTCAAGACTCAGAC
TTTTACGAGAAAGAAACACCATACACGATTTTCTATAAGGACATCCAATG
TTcataactttttgacttttaagccaTAAAATGTACTTAAtatgttctca
ttttcaccattttctgtGTTTTTGTCCATGTTCCTAAGAATTTGGATGTG
AATCCTCAAAgtcttaaaatgctcttaactttgtACTTAACAAACCGAAA
AAATGGAACCCTTCTCCTCTCGCCTTAGATCTGTAAAAGACCATACAAGA
TTGTGATTCATCTCCAGTCCTTTAAAACACCTTGGTATGCCACGCCCAAA
CTTCGACCAATCACAATTAATTTCAGAGACGACCATAGAAACGGGATGTT
TAAAATTCACAGCGATACCACTATAAAAGCGCACGTACGATATCTAAGGT
TCTTTAATACAGGTATGTTTCGTTTGGAAATGTCTTTAACATAGCTCACA
TAAACATGCTTAATTTATTCTTGTAGTGTTCCAACTATCGTTGACCAGGA
AAGATCTTCTCAAAGCCAAGGGTGCCAAATAAGACGAAAAATGCGAACAG
TGACAAGATTATAATACTAGCCTAAGAAATGAAGATTAAATGGGATCACT
TCATAACTAATCCACTAATCTAGGCTTCAGAAAGAAATGTTCAAAGGCAA
TCTGCACTATCAAATATAtctcttatctgatattccgatggcggattggc
ggccgctcacgctaaagctctaaagggagcgggccaatttcccatcggag
aggaatgatagtcggcctttggcgtgccgcatcctcagtcgggttcaaca
gtcCTTGCCCATAAACCTagaatatttcggttggacccgccaatccctga
gggctgggttaccagacctcccgcagcaaaattcttgacgcagtctcgca
aaattccgtaatgtaaaccttccagatgttgaaaattttaccgaccttca
gagctttagcgtgtcggatgaaaatttcaccatctgggtgccagataaat
aTATCTCGAACCTAGAGCAGCCTTTGTGAGCATTACAGCAGAGTCATATA
AGAAAAGGATCTTGGTGCGAATTTACCATTCGCCTGGACGACTTCATACT
TGACTTTCTTCGCCATAGGGAAGGTGAGGTTCTTGATCAATGGGAAAATA
AGATATGACTGCACGAAACCACGTGGTCCTTACAACTGGTTTCAAAGAgg
tgagaaaaacttttttgctcagttttttttatcatgGTTCTGAATACATC
TTTTGTGATTGGGTCATTTCTTATAATTTCAGCCTGGGAATACAAGTTAA
TTTGCGCTACACTCTAGACGTAAACGGAATCctgatattttttgttgata
AAGACTTTTTTGAGGTCGAGttccctgcaaaattttaaaagccaaatcAT
AAATTAGGTGCTTTAATTTACTTGAGGAATATTAAATATTAGCCCTAATC
ACGcactcaggatctaaaagctccgCTCAAAAATATTCTATTATGGAAAT
ATGGCTGGAAACAGGGtattaacctttcaaagccgctaacttttttgaaa
aaggccaaaaagtttatcatttttttctggagatttattctttcaaaggc
aatttctcgaccaggacaaacgattcaggtaccaactttggtatcgttgg
aaagctcttctcaggcaaattaaggcctatccagatttttcaaacttacc
tcaattttttatcaccgtttccacttatcatagcatatcacttcatatat
cgaaagaagcgtattggagtgtagatcactggaattgctgtgccataatt
aattttttcacccaaaaaaagatattaggcaaaaaccaaaaaatgctgac
gtcagcaaaacttgttttttgaataactccaatttggcttatggtaaaaa
catgaaatttggaccaaagttgcacaccattaaaaggatcattttgaaaa
aaaaattttgaaattttgctgacgtcagcacttaattgaaaaatttcgta
ttttgctgatttctgctgacgtcggcaaaatttgcaaaaaaaNaagaaac
aaaatttttgaatttttgctgacgtcagcagttaattgcaaaatttcgta
ttttgctgatttctgctgacgtcagcaaaatttgcaaaaaaaaattatac
aaaaatgttcctattattgatatgcaacttttgtccaaatttcatgaata
taccataagccaaactgtctaatatctttttttgggcgaaaaaattaatt
atggcacagcaattctagtgatctacactccaatagGCTTCTTTCGATGC
ATGAAGTGATATcctatgacaagtggaaacggtgataaaaaattatggta
aaCTTGGACGTGCCATAATTTGCCTGagtttctctcagctacaaaaaata
gcagattttttttctctcaatctcaagtggtcaggagttatgaccaaaag
actgtgtatcggtaaaataaccttttcaaaacgtatatatacgtatttcG
CCTACTAAGGGTattaaggcggggtcaaaatgcttgcaacgttacaaatc
atttctaggagctcattttcatttcaaatgaaGGGTATCAACAAGTAGAA
TAAGATTCAGATGTTTTCTGATTAAGAAATTTGGCATAATTCGcaaaaaa
cttagattttgCGTAGATagatttttgctattttgatgacgtcataaaca
tttaAGTcctaataacttttgatttaagtatcgaaattaattgaaattcG
TCCAAAGATGCACATAATTAATGTTTccagaataaaaaaatttgcttatg
aaatttgatgacgtcatcacttttcgactgaaaaaataaaaatgaaatac
tttaaaatactgacgtcatcataattttaaaaatattttgaaatcttgcT
TTTCccgcccgaactttaaaattttattttaaaaacgaCGAAATacctag
actatgctatagtctaagacgaattcgAATCTCGGGTGACACTGATTGTA
ATTTAACGTTTACTCAACCCTCGATCAATTTCTTCTGTATTCTTCAGGTC
AATTGAGTGAACAGGCCCCTCGTGGTCAATATAACCGAATTTGGTACAAA
CTTCTTGTTCGATTTGAACTCAAAACTAAAGCACACAAACACTGGTGGAA
ATTCTCTTACAAATGTGCCAAAAACGGGTGTAAAGATTTGGTGAAGAAGA
GCGGCACTTTGGGTGGCCATGCGGTTGCGGGTCCACAGTCATGTAAGAAT
GATGTTCTGAAATACCGGAATTACTTGTTGGAAAATCAGAGAAGGCGTTG
TCCGGGATGTGTGGAGCCATGATATACTTATGAGACGCTCAGTTTAGTGA
CTAAAATGGTAAACGGTTGGTTTTATTAGAAGACCCAGTAAAATTTTGCC
GAACCTGAggattttcttaaatttctattgttccaaacaatAGAACTTTT
GTTCTGGAGGCCTAAATCTGAGGctagtgttcttataaaattgttcttac
aaaTAAAATAGCGCGTAGTTGAAAATCTGTATTTTTTGAATTCTTACAAT
ATCTTTTTGGCGAGGGAGTAACAATTTTGTGGGGTATTTTATTATTGTTT
AGAGCGGTATATTATagtaaattaaattttgatatgATAGGTAGTTCTGA
TTACTGAATGAAATATATCCGAGGAGAAAACAATGATCCAAAACAATTGT
CCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012423XLOC_012423Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022150-exon-sc0000406-1491911889:39947..40117TCONS_00022150-exon-sc0000406-1491911889:39947..40117Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1510915933:39947..40117TCONS_00022150-exon-sc0000406-1510915933:39947..40117Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1575043694:39947..40117TCONS_00022150-exon-sc0000406-1575043694:39947..40117Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1491911889:41037..41178TCONS_00022150-exon-sc0000406-1491911889:41037..41178Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1510915933:41037..41178TCONS_00022150-exon-sc0000406-1510915933:41037..41178Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1575043694:41037..41178TCONS_00022150-exon-sc0000406-1575043694:41037..41178Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1491911889:43125..43180TCONS_00022150-exon-sc0000406-1491911889:43125..43180Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1510915933:43125..43180TCONS_00022150-exon-sc0000406-1510915933:43125..43180Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1575043694:43125..43180TCONS_00022150-exon-sc0000406-1575043694:43125..43180Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1491911889:44015..44095TCONS_00022150-exon-sc0000406-1491911889:44015..44095Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1510915933:44015..44095TCONS_00022150-exon-sc0000406-1510915933:44015..44095Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1575043694:44015..44095TCONS_00022150-exon-sc0000406-1575043694:44015..44095Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1491911889:45944..46601TCONS_00022150-exon-sc0000406-1491911889:45944..46601Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1510915933:45944..46601TCONS_00022150-exon-sc0000406-1510915933:45944..46601Clytia hemisphaericaexon
TCONS_00022150-exon-sc0000406-1575043694:45944..46601TCONS_00022150-exon-sc0000406-1575043694:45944..46601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:39947..46601 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.043715	0	0	0	0	0	0	0.119946	0	0.105808	0	0	0.072144	0.0799978	0	0	0	0.915535	0.725828	7.29155	18.284	2.60496	5.88966	0.872592	1.16407	0.556798	0.359816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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