TCONS_00022153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022153
Unique NameTCONS_00022153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2071

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022153 ID=TCONS_00022153|Name=TCONS_00022153|organism=Clytia hemisphaerica|type=transcript|length=2071bp
AATCACCTATTTATCGATTTCCCCTGAATTCGGAAAATTGGACTGCGTTC
ATCAAAACAACAGGGCGGTATGCGGACTTCCTTGTCTCAAAAGCTATATA
AAACATGCAAAATTACCAATAGAAACATCTCAGAAGCTTCTtttggaaga
agaagaagatttttctctcttttgtaCACATGAAGTTCTGAAGTTCTGTC
ACTTGACCAGGATGAGGACGTGGAAAAGTTTTTTGGTGTTGGTGTTTTGT
GTTTACACAGTACAATGTGATGAACAGCGAGACATTACACAACAAAATAA
TATTATTCAAGATGATGCTACAAAACAACTGACAACAGCCGATGAAAATG
TTGCTGACACTGCAGAAAGTACAGCTGACGCTGTTGTAGAAAATACTGCT
GACACTGCAGAAAATACTGCTGACCCTGCAGAAAACACTGCTGATGCTGC
AGAAGAAAGTGCTGACACTGCAGAAAATACTGCTGACACTGCAGAAGAAA
ATGCTGACGCTGCAGAAAATGAAGAAGCAGCAGCAGatacatcaaaagaa
gaaaatggcGAGCCAGAAAATGAGGAAAATGACGCTGAAGaagatgaaca
aaaaaatgACGAAGTTATTGATAAAGTTGAACAAGAAGATGACTTGGATG
ATGAAGAGGAAGACGAAACAGAAGCTGCAAATGAACAAGAAGATCCATCA
ACAAAAGAATCGACATCATCTTCGGACGAACAAGAAGAACAAAATAacga
tgaagatgaagaagaagacaTTGAAAAAGATGAATTCTCAACTTTGTTGA
AAAACGATGATGTTAATGCTCAAAAAGATGCAACAAGTACTTCAGAATTA
GAAACAAAATCACAAACATCATTAGATGAAGAACAGGAACAAGACAAcga
tgaagaaaatgaaaaagatgaagttatcgaaaaaaatattgcagCAGATA
GCACTTCTTCAGACAAAAAATCAGACGCCTCGAAATACAAACCACGGAGA
CGTAGCCATCGCAGGAGACGTTCCCACCCCAGGAGACGTTCCCAACCAAG
AAGACGTTCCCACCCAAGGAGACGTAGCCAACCCAGGAGACGGTCCCACC
CAAGAAGACGTTCCCACCCCAGGAGACGTTCCCACCCCAGAAGACGTTCC
CACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTCCCACCCCAGAAGACG
TTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTCCCACCCCAGAA
GACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTCCCACCCC
AGAAGACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTCCCA
CCCCAGAAGACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTT
CCCACCCCAGAAGACGTTCCCACCCCAGGAGACGTTCCCAACCAAGAAGA
CGTTCCCACCCAAGGAGACGTAGCCAACCCAGGAGACGGTCCCACCCAAG
AAGACGTTCCCACCCCAGAAGACGTTCCCACCCCAGAAGACGTTCCCACC
CCAGAAGACGTTCCCACCCCAGAAGACGTTCCCACCCCAGAAGACGTTCC
CACCACAGAAGACGTTCCCAACCCAGGAGACGTATCCACCCAAGACGTCG
TATAGGGTTCCGAAGACGATTCCACCCCAGGAGACGTATCCATCCAAGAC
GTCGAATCTTCCCAAGACGTCGAATCGGATTCCGTCGAAGATTCCATCCA
CGAAGACGTCTTGGCTTTCGCAGACGTTTTGGATTCCGTAGGAGACGGCC
TTATGTTCCATACCCAGGACCCTACCCTGCTGGAGGGTACCCTATCGGAG
GTTATCCCCCATATGGCGGATACCCATACCCAGGAACCccaaaaaaagtg
tacaaaaatTAATGAGAGAGCTGCTGAAGCAAAAGGAAGCAACGAAGATC
GAAGATAATGGTGATGGGAAGTCTTTTTAAAGACAAaaacacaatatttt
tataatttttgtataACAATCTTATTATaatctttgaaagaaaaaatagt
CAGTAATACATGAAAAATTAA
Run BLAST on NCBI

transcript from alignment at sc0000406:106841..110418+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022153 ID=TCONS_00022153|Name=TCONS_00022153|organism=Clytia hemisphaerica|type=transcript|length=3578bp|location=Sequence derived from alignment at sc0000406:106841..110418+ (Clytia hemisphaerica)
AATCACCTATTTATCGATTTCCCCTGAATTCGGAAAATTGGACTGCGTTC
ATCAAAACAACAGGGCGGTATGCGGACTTCCTTGTCTCAAAAGCTATATA
AAACATGCAAAATTACCAATAGAAACATCTCAGAAGCTTCTtttggaaga
agaagaagatttttctctcttttgtaCACATGAAGTTCTGAAGTTCTGTC
ACTTGACCAGGATGAGGACGTGGAAAAGTTTTTTGGTGTTGGTGTTTTGT
GTTTACACAGTACAATGTAAGTAACACTTGAAGAGTTTTTAAACCAATAC
CTTAATCTAATTAATTTTCGAGCGCCTTTTATTTTCGCGTAGTGAACCTT
GTTTCTTGTTTCGCACCGGGGATTAACGTACTTTATCTAAAAATGTGTTT
TAGTATTTCGCCAAATGGCAGGTAGTTTAGGATTAGGTAGTTTCACAAGG
CAGCTCCTTAACCACTTAAAACCTTGACATGACACTCTTCGTAAAGTGAT
TCATATTGGGTCCTTTTACCGAAATTTAACTCAACTTAAGCTTTTTACCT
AAAGCTCTACAGGTGCAGTAAATGCTTTATTCTTCATTTGACAGGTGATG
AACAGCGAGACATTACACAACAAAATAATATTATTCAAGATGATGCTACA
AAACAACTGACAACAGCCGATGAAAATGTTGCTGACACTGCAGAAAGTAC
AGCTGACGCTGTTGTAGAAAATACTGCTGACACTGCAGAAAATACTGCTG
ACCCTGCAGAAAACACTGCTGATGCTGCAGAAGAAAGTGCTGACACTGCA
GAAAATACTGCTGACACTGCAGAAGAAAATGCTGACGCTGCAGAAAATGA
AGAAGCAGCAGCAGatacatcaaaagaagaaaatggcGAGCCAGAAAATG
AGGAAAATGACGCTGAAGaagatgaacaaaaaaatgACGAAGTTATTGAT
AAAGTTGAACAAGAAGATGACTTGGATGATGAAGAGGAAGACGAAACAGG
TATGATTAAAATATACTTCTTTATTCATAAAGCTAGTCAATCGACTGAAA
CAATTTTTATCTCTTTTGATGGATTGtgagaatctttttttgactGACTG
AATCTAAATGCATAATTAAAACGATCAATATTTCCCCTTTTTATAATTAT
ATCGTTTAAGCATAATAAACTTTCAATGTAATACTTTGAAGGAAGTTCAA
AGAAAAACCTCAGGAGCTGAAGGGATTTTTTAAGCACCCAAACAGTCGTT
ATTTTGGTTATAATAAGAAAATCTCTAACAACTAAAGAATTATCAGCCAC
CAGTTTCTAAAGTAgtgtctctataactcgaaagcccacggggaacgcaa
attttttggagttaaggaaatttcaagttatagagtaaggtttataaagt
TATTGTTAGTTGAAGGGCTCAGtaaacttgttcgaattaaggagacattA
AATATTAAAGGTTCGGTATGATGATTTCATTGTATCTTATCACTACTGTT
ATATAGAAGCTGCAAATGAACAAGAAGATCCATCAACAAAAGAATCGACA
TCATCTTCGGACGAACAAGAAGAACAAAATAacgatgaagatgaagaaga
agacaTTGAAAAAGATGAATTCTCAACTTTGTTGAAAAACGATGATGTTA
ATGCTCAAAAAGATGCAACAAGTACTTCAGGTAACTTCTATACAAATATA
TCTTGAAAATGTTTGAATGAATAGACTTTGTTGAAAAACGACGTTGCTAA
ATAAGACGTTGGTACGAGTACTTCAGGTAACTTGGGAGtgtttgaatgaa
tgaatgaatgaatgaatgaatgaatgaatgaatgaataaacaaATGAATG
AATGGATGAAGACCATCTGTCTGATAGAGACAAAACCATATATATGATGA
AAGCAAATTGACTCTATCATGAATGCCACTGTCCCATTTCATCGGTTTCG
TCCCTTAAATGGTATGTTTTAAGTacattctgaaaatttgaatttgcagA
ATTGAATTAGCCAGCTATTCTTAAGATTAAAACTTCTTTTTCAGCAGAAT
TAGAAACAAAATCACAAACATCATTAGATGAAGAACAGGAACAAGACAAc
gatgaagaaaatgaaaaagatgaagttatcgaaaaaaatattgcagCAGA
TAGCACTTCTTCAGGTATCTTCATTATTATTTCGGTAACAATTCCAGATA
TGTTTAAAGTTCAAGATTTCTGAGACACAGTACGGAGTAATCTTGATAAA
GAGAGCTAGGGTAGGAGAAATatcaaactttctttcaaatattgaacGGT
TTTTTGACAGAAATTATGATAGAACTCCAAAGTGGTTTATATACGACGAA
AGTTCTAAGCAGACTTTTAATGTTTTGATGCAAATCTTGtttaaagtttt
tgactttaaattttctataaaaaatgaGGCGTCCTATAacgtcaaaaata
attttgtttttcgtaTCAGACAAAAAATCAGACGCCTCGAAATACAAACC
ACGGAGACGTAGCCATCGCAGGAGACGTTCCCACCCCAGGAGACGTTCCC
AACCAAGAAGACGTTCCCACCCAAGGAGACGTAGCCAACCCAGGAGACGG
TCCCACCCAAGAAGACGTTCCCACCCCAGGAGACGTTCCCACCCCAGAAG
ACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTCCCACCCCA
GAAGACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTCCCAC
CCCAGAAGACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGACGTTC
CCACCCCAGAAGACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGAAGAC
GTTCCCACCCCAGAAGACGTTCCCACCCCAGGAGACGTTCCCAGCCCAGA
AGACGTTCCCACCCCAGAAGACGTTCCCACCCCAGGAGACGTTCCCAACC
AAGAAGACGTTCCCACCCAAGGAGACGTAGCCAACCCAGGAGACGGTCCC
ACCCAAGAAGACGTTCCCACCCCAGAAGACGTTCCCACCCCAGAAGACGT
TCCCACCCCAGAAGACGTTCCCACCCCAGAAGACGTTCCCACCCCAGAAG
ACGTTCCCACCACAGAAGACGTTCCCAACCCAGGAGACGTATCCACCCAA
GACGTCGTATAGGGTTCCGAAGACGATTCCACCCCAGGAGACGTATCCAT
CCAAGACGTCGAATCTTCCCAAGACGTCGAATCGGATTCCGTCGAAGATT
CCATCCACGAAGACGTCTTGGCTTTCGCAGACGTTTTGGATTCCGTAGGA
GACGGCCTTATGTTCCATACCCAGGACCCTACCCTGCTGGAGGGTACCCT
ATCGGAGGTTATCCCCCATATGGCGGATACCCATACCCAGGAACCccaaa
aaaagtgtacaaaaatTAATGAGAGAGCTGCTGAAGCAAAAGGAAGCAAC
GAAGATCGAAGATAATGGTGATGGGAAGTCTTTTTAAAGACAAaaacaca
atatttttataatttttgtataACAATCTTATTATaatctttgaaagaaa
aaatagtCAGTAATACATGAAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012424XLOC_012424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022153-exon-sc0000406-1491911889:106841..107106TCONS_00022153-exon-sc0000406-1491911889:106841..107106Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1510915933:106841..107106TCONS_00022153-exon-sc0000406-1510915933:106841..107106Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1575043694:106841..107106TCONS_00022153-exon-sc0000406-1575043694:106841..107106Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1491911889:107435..107839TCONS_00022153-exon-sc0000406-1491911889:107435..107839Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1510915933:107435..107839TCONS_00022153-exon-sc0000406-1510915933:107435..107839Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1575043694:107435..107839TCONS_00022153-exon-sc0000406-1575043694:107435..107839Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1491911889:108347..108520TCONS_00022153-exon-sc0000406-1491911889:108347..108520Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1510915933:108347..108520TCONS_00022153-exon-sc0000406-1510915933:108347..108520Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1575043694:108347..108520TCONS_00022153-exon-sc0000406-1575043694:108347..108520Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1491911889:108888..109004TCONS_00022153-exon-sc0000406-1491911889:108888..109004Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1510915933:108888..109004TCONS_00022153-exon-sc0000406-1510915933:108888..109004Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1575043694:108888..109004TCONS_00022153-exon-sc0000406-1575043694:108888..109004Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1491911889:109310..110418TCONS_00022153-exon-sc0000406-1491911889:109310..110418Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1510915933:109310..110418TCONS_00022153-exon-sc0000406-1510915933:109310..110418Clytia hemisphaericaexon
TCONS_00022153-exon-sc0000406-1575043694:109310..110418TCONS_00022153-exon-sc0000406-1575043694:109310..110418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:106841..110418 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0169884	0.0164356	0.0583058	0.074385	0.0448681	0.0812175	0.127956	0.164255	272.522	186.859	26.1366	970.218	0.251312	0.0488895	60.155	13.2594	0.0638211	0.0439817	0.951955	0.0569932	0.0166356	0.0269569	0	0	0.0182269	0.065057	0.0470661	0.0743179	0.018895	0.0186547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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