TCONS_00022180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022180
Unique NameTCONS_00022180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022180 ID=TCONS_00022180|Name=TCONS_00022180|organism=Clytia hemisphaerica|type=transcript|length=401bp
aaaaatatatctcacccggccgcaaatagaaaaaaacttttttttttgtg
caatCGAAGAAAGNCTCGTAAAATATCATTCCtcatgattttgatttcat
tatcAAGAAGACGTGTTCTTCTTAACAGTTCATCATTTGACATACGCAGC
ACCTCAGCATCAAGTCCTTCTTCAGCATTCTTAAAGATCTCTTTGTCTTC
CAACGATGTTGTCATTTTAgttattgaaaataaagaacaaaatgTCTGCA
AGTCGTTTGCTTCCCTTTTTCGATGTCTTCCGTTCAGTCGCTGGCCGCGG
TGTTTTTTGTTATGGGTGGTTGTGGGTCATGGCTTTTAGATGATGATTTT
GCAGATTGAAAGCTAGGCTGTGCTCGATCGAGAACAATAAAAATGTAGGT
A
Run BLAST on NCBI

transcript from alignment at sc0000406:121010..121410

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022180 ID=TCONS_00022180|Name=TCONS_00022180|organism=Clytia hemisphaerica|type=transcript|length=401bp|location=Sequence derived from alignment at sc0000406:121010..121410 (Clytia hemisphaerica)
TACCTACATTTTTATTGTTCTCGATCGAGCACAGCCTAGCTTTCAATCTG
CAAAATCATCATCTAAAAGCCATGACCCACAACCACCCATAACAAAAAAC
ACCGCGGCCAGCGACTGAACGGAAGACATCGAAAAAGGGAAGCAAACGAC
TTGCAGAcattttgttctttattttcaataacTAAAATGACAACATCGTT
GGAAGACAAAGAGATCTTTAAGAATGCTGAAGAAGGACTTGATGCTGAGG
TGCTGCGTATGTCAAATGATGAACTGTTAAGAAGAACACGTCTTCTTgat
aatgaaatcaaaatcatgaGGAATGATATTTTACGAGNCTTTCTTCGatt
gcacaaaaaaaaaagtttttttctatttgcggccgggtgagatatatttt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012441XLOC_012441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022180-exon-sc0000406-1491911889:121010..121410TCONS_00022180-exon-sc0000406-1491911889:121010..121410Clytia hemisphaericaexon
TCONS_00022180-exon-sc0000406-1510915933:121010..121410TCONS_00022180-exon-sc0000406-1510915933:121010..121410Clytia hemisphaericaexon
TCONS_00022180-exon-sc0000406-1575043694:121010..121410TCONS_00022180-exon-sc0000406-1575043694:121010..121410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:121010..121410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
125.835	123.249	111.094	107.051	166.705	142.759	151.803	184.373	124.101	114.952	130.67	110.14	109.865	126.348	93.0677	110.348	106.948	117.012	37.3208	55.4971	86.4694	86.0091	77.3307	80.3209	219.221	222.208	93.4935	93.5573	70.7565	68.7427
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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